Wall clock time and date at job start Fri Apr 10 2020 18:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47239 * 2 1 4 4 C 1.46507 * 119.99586 * 269.99682 * 3 2 1 5 5 C 1.50695 * 109.47338 * 270.00046 * 4 3 2 6 6 H 1.08002 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00402 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99586 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00265 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47036 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47268 * 119.99840 * 9 7 5 12 12 H 1.48504 * 109.46863 * 239.99892 * 9 7 5 13 13 C 1.34774 * 120.00254 * 89.99708 * 3 2 1 14 14 O 1.21290 * 120.00115 * 179.97438 * 13 3 2 15 15 C 1.50691 * 120.00028 * 0.02562 * 13 3 2 16 16 O 1.45200 * 109.47358 * 179.97438 * 15 13 3 17 17 C 1.34821 * 117.00157 * 179.97438 * 16 15 13 18 18 O 1.21568 * 120.00467 * 0.02562 * 17 16 15 19 19 C 1.46918 * 120.00134 * 180.02562 * 17 16 15 20 20 C 1.39428 * 120.59679 * 180.02562 * 19 17 16 21 21 C 1.39427 * 118.95051 * 180.29890 * 20 19 17 22 22 C 1.35790 * 120.13817 * 359.43681 * 21 20 19 23 23 C 1.50702 * 119.37550 * 180.28750 * 22 21 20 24 24 N 1.35413 * 121.24912 * 0.57606 * 22 21 20 25 25 H 0.96991 * 119.47159 * 179.69048 * 24 22 21 26 26 C 1.34662 * 121.06256 * 359.71032 * 24 22 21 27 27 O 1.21872 * 120.10537 * 180.02562 * 26 24 22 28 28 H 1.09001 * 109.47485 * 300.00538 * 1 2 3 29 29 H 1.08997 * 109.47045 * 60.00261 * 1 2 3 30 30 H 1.09004 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47044 * 239.99622 * 2 1 3 32 32 H 1.09001 * 109.46778 * 120.00143 * 2 1 3 33 33 H 1.08992 * 109.47194 * 30.00605 * 4 3 2 34 34 H 1.09010 * 109.46636 * 150.00236 * 4 3 2 35 35 H 0.96998 * 119.99908 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47405 * 59.99690 * 15 13 3 37 37 H 1.08998 * 109.47504 * 300.00041 * 15 13 3 38 38 H 1.08002 * 120.51987 * 0.02562 * 20 19 17 39 39 H 1.08006 * 119.92845 * 179.70029 * 21 20 19 40 40 H 1.09001 * 109.47232 * 270.28510 * 23 22 21 41 41 H 1.09006 * 109.47216 * 30.28047 * 23 22 21 42 42 H 1.08997 * 109.47566 * 150.28711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1495 2.3902 -2.8776 8 7 3.3495 3.1262 -3.6177 9 14 5.9135 2.0960 -3.4171 10 1 6.6008 1.2400 -2.4170 11 1 5.9205 1.4177 -4.7381 12 1 6.6216 3.3968 -3.5248 13 6 2.2429 2.0165 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4722 16 8 2.3072 2.1955 3.5758 17 6 2.1354 1.7097 4.8217 18 8 1.7338 0.5734 4.9811 19 6 2.4336 2.5536 5.9868 20 6 2.2609 2.0636 7.2807 21 6 2.5484 2.8962 8.3616 22 6 3.0000 4.1589 8.1483 23 6 3.3116 5.0419 9.3292 24 7 3.1702 4.6417 6.8947 25 1 3.4900 5.5492 6.7722 26 6 2.9023 3.8824 5.8153 27 8 3.0622 4.3345 4.6949 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6758 3.5172 -4.4433 36 1 2.6228 0.4187 2.5299 37 1 0.9445 1.0115 2.5302 38 1 1.9059 1.0567 7.4431 39 1 2.4156 2.5345 9.3706 40 1 2.4176 5.5966 9.6140 41 1 3.6393 4.4261 10.1669 42 1 4.1031 5.7415 9.0610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062282320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:03 Heat of formation + Delta-G solvation = -119.656791 kcal Electronic energy + Delta-G solvation = -26860.134374 eV Core-core repulsion = 22806.310889 eV Total energy + Delta-G solvation = -4053.823485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63006 -40.02350 -38.71453 -37.51147 -36.14583 -35.12235 -34.07279 -32.75103 -32.07779 -30.06965 -29.36365 -28.14803 -26.34789 -24.17065 -23.63816 -22.96584 -22.47741 -21.41689 -18.89960 -18.41357 -18.08472 -16.69377 -16.55555 -16.41477 -16.28595 -16.25734 -15.77242 -15.69586 -15.16769 -14.61583 -14.36476 -14.12212 -13.96691 -13.58027 -13.34930 -13.19728 -12.90676 -12.71031 -12.54332 -12.30621 -11.99803 -11.93910 -11.89686 -11.51061 -11.14651 -10.84015 -10.79088 -10.74743 -10.62603 -10.50006 -10.33403 -10.13549 -10.05926 -9.54546 -8.78986 -8.37161 -8.36756 -7.60661 -5.97798 -4.01901 -0.01921 1.51352 2.38938 2.39557 2.74024 3.35097 3.41499 3.43735 3.47424 3.50476 3.77401 4.03176 4.22302 4.37406 4.51021 4.71545 4.73951 4.79578 4.89755 5.06383 5.14343 5.26560 5.36855 5.38451 5.46376 5.50658 5.63024 5.70106 5.72689 5.84309 6.09869 6.22949 6.28853 6.47144 6.54242 6.57515 7.12063 7.51562 7.60730 7.82185 7.89919 7.99667 8.30374 8.44747 8.97372 9.15431 9.62808 11.10452 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.002899 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.653422 B = 9656.234764 C =10725.550327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.509 6.509 15 C 0.048 3.952 16 O -0.299 6.299 17 C 0.527 3.473 18 O -0.524 6.524 19 C -0.267 4.267 20 C 0.075 3.925 21 C -0.258 4.258 22 C 0.209 3.791 23 C -0.134 4.134 24 N -0.604 5.604 25 H 0.418 0.582 26 C 0.523 3.477 27 O -0.485 6.485 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 -1.521 28.897 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.330 5.330 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.383 6.383 15 C -0.030 4.030 16 O -0.212 6.212 17 C 0.373 3.627 18 O -0.416 6.416 19 C -0.273 4.273 20 C 0.053 3.947 21 C -0.281 4.281 22 C 0.095 3.905 23 C -0.191 4.191 24 N -0.237 5.237 25 H 0.257 0.743 26 C 0.320 3.680 27 O -0.360 6.360 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.923 -0.964 27.899 28.190 hybrid contribution 1.007 -0.059 -0.383 1.079 sum -2.916 -1.024 27.516 27.689 Atomic orbital electron populations 1.22236 0.96684 1.01547 1.02387 1.21476 0.93658 0.84114 1.02887 1.48189 1.64367 1.13350 1.07100 1.19304 0.96361 0.93743 0.77665 1.21490 0.96929 1.31727 1.06180 0.92368 1.24936 0.97866 0.94949 0.96415 1.69946 1.35569 1.33571 1.14366 0.86433 0.84685 0.78043 0.78211 1.19797 1.21008 1.20894 1.19718 0.79840 0.87237 0.84246 1.90756 1.43662 1.17317 1.86575 1.22960 1.02414 0.92730 0.84904 1.86883 1.77737 1.43227 1.13341 1.20258 0.74202 0.84825 0.83435 1.90826 1.44646 1.19090 1.87048 1.20002 1.19045 0.95601 0.92605 1.22002 0.83434 0.99307 0.89964 1.20379 1.13781 0.93443 1.00492 1.20910 0.88968 0.94576 0.86058 1.21234 1.03841 0.99473 0.94583 1.43812 1.56089 1.17960 1.05792 0.74320 1.17016 0.80297 0.86505 0.84192 1.91222 1.51083 1.72683 1.20970 0.93131 0.91861 0.92002 0.89561 0.91804 0.94710 0.93753 0.92820 0.88903 0.88975 0.83069 0.82722 0.88497 0.88343 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.10 1.77 5.93 -4.05 -0.02 1.75 16 3 N -0.60 -13.58 2.46 -175.07 -0.43 -14.01 16 4 C 0.25 6.80 5.16 -5.19 -0.03 6.77 16 5 C -0.52 -15.51 9.39 -34.44 -0.32 -15.83 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.90 22.69 29.54 -169.99 -5.02 17.67 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.51 11.98 7.75 -10.99 -0.09 11.90 16 14 O -0.51 -14.68 16.08 -14.11 -0.23 -14.91 16 15 C 0.05 0.91 4.51 36.00 0.16 1.07 16 16 O -0.30 -6.17 7.95 -51.04 -0.41 -6.58 16 17 C 0.53 9.11 7.88 34.24 0.27 9.38 16 18 O -0.52 -9.03 16.18 -19.32 -0.31 -9.35 16 19 C -0.27 -3.67 5.92 -104.52 -0.62 -4.29 16 20 C 0.07 0.66 9.70 -38.70 -0.38 0.29 16 21 C -0.26 -1.37 9.58 -40.02 -0.38 -1.75 16 22 C 0.21 1.04 6.80 -81.89 -0.56 0.48 16 23 C -0.13 -0.10 10.06 36.01 0.36 0.26 16 24 N -0.60 -5.03 5.22 -10.88 -0.06 -5.08 16 25 H 0.42 2.56 8.74 -40.82 -0.36 2.20 16 26 C 0.52 7.46 7.73 -14.89 -0.12 7.34 16 27 O -0.48 -9.68 16.05 -16.43 -0.26 -9.94 16 28 H 0.05 0.72 7.22 -51.93 -0.38 0.34 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 32 H 0.06 0.94 6.44 -51.93 -0.33 0.61 16 33 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.04 1.37 7.42 -51.92 -0.39 0.99 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.09 1.59 7.40 -51.93 -0.38 1.20 16 37 H 0.09 1.52 7.18 -51.93 -0.37 1.15 16 38 H 0.15 1.13 7.69 -52.49 -0.40 0.73 16 39 H 0.16 0.30 8.06 -52.48 -0.42 -0.13 16 40 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.10 -0.07 8.07 -51.93 -0.42 -0.48 16 42 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -41.95 367.23 -7.41 -49.35 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.53 Total: -2.95 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: -1.43 Total: 16.96 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.25 Total: -45.79 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.21 Total: -40.77 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -41.95 -7.41 -49.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062282320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.303 kcal (2) G-P(sol) polarization free energy of solvation -41.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds