Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47239 * 2 1 4 4 C 1.46507 * 119.99586 * 269.99682 * 3 2 1 5 5 C 1.50695 * 109.47338 * 270.00046 * 4 3 2 6 6 H 1.08002 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00402 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99586 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00265 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47036 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47268 * 119.99840 * 9 7 5 12 12 H 1.48504 * 109.46863 * 239.99892 * 9 7 5 13 13 C 1.34774 * 120.00254 * 89.99708 * 3 2 1 14 14 O 1.21290 * 120.00115 * 179.97438 * 13 3 2 15 15 C 1.50691 * 120.00028 * 0.02562 * 13 3 2 16 16 O 1.45200 * 109.47358 * 179.97438 * 15 13 3 17 17 C 1.34821 * 117.00157 * 179.97438 * 16 15 13 18 18 O 1.21568 * 120.00467 * 0.02562 * 17 16 15 19 19 C 1.46918 * 120.00134 * 180.02562 * 17 16 15 20 20 C 1.39428 * 120.59679 * 180.02562 * 19 17 16 21 21 C 1.39427 * 118.95051 * 180.29890 * 20 19 17 22 22 C 1.35790 * 120.13817 * 359.43681 * 21 20 19 23 23 C 1.50702 * 119.37550 * 180.28750 * 22 21 20 24 24 N 1.35413 * 121.24912 * 0.57606 * 22 21 20 25 25 H 0.96991 * 119.47159 * 179.69048 * 24 22 21 26 26 C 1.34662 * 121.06256 * 359.71032 * 24 22 21 27 27 O 1.21872 * 120.10537 * 180.02562 * 26 24 22 28 28 H 1.09001 * 109.47485 * 300.00538 * 1 2 3 29 29 H 1.08997 * 109.47045 * 60.00261 * 1 2 3 30 30 H 1.09004 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47044 * 239.99622 * 2 1 3 32 32 H 1.09001 * 109.46778 * 120.00143 * 2 1 3 33 33 H 1.08992 * 109.47194 * 30.00605 * 4 3 2 34 34 H 1.09010 * 109.46636 * 150.00236 * 4 3 2 35 35 H 0.96998 * 119.99908 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47405 * 59.99690 * 15 13 3 37 37 H 1.08998 * 109.47504 * 300.00041 * 15 13 3 38 38 H 1.08002 * 120.51987 * 0.02562 * 20 19 17 39 39 H 1.08006 * 119.92845 * 179.70029 * 21 20 19 40 40 H 1.09001 * 109.47232 * 270.28510 * 23 22 21 41 41 H 1.09006 * 109.47216 * 30.28047 * 23 22 21 42 42 H 1.08997 * 109.47566 * 150.28711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1495 2.3902 -2.8776 8 7 3.3495 3.1262 -3.6177 9 14 5.9135 2.0960 -3.4171 10 1 6.6008 1.2400 -2.4170 11 1 5.9205 1.4177 -4.7381 12 1 6.6216 3.3968 -3.5248 13 6 2.2429 2.0165 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4722 16 8 2.3072 2.1955 3.5758 17 6 2.1354 1.7097 4.8217 18 8 1.7338 0.5734 4.9811 19 6 2.4336 2.5536 5.9868 20 6 2.2609 2.0636 7.2807 21 6 2.5484 2.8962 8.3616 22 6 3.0000 4.1589 8.1483 23 6 3.3116 5.0419 9.3292 24 7 3.1702 4.6417 6.8947 25 1 3.4900 5.5492 6.7722 26 6 2.9023 3.8824 5.8153 27 8 3.0622 4.3345 4.6949 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6758 3.5172 -4.4433 36 1 2.6228 0.4187 2.5299 37 1 0.9445 1.0115 2.5302 38 1 1.9059 1.0567 7.4431 39 1 2.4156 2.5345 9.3706 40 1 2.4176 5.5966 9.6140 41 1 3.6393 4.4261 10.1669 42 1 4.1031 5.7415 9.0610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062282320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = -150.308611 kcal Electronic energy + Delta-G solvation = -26861.463537 eV Core-core repulsion = 22806.310889 eV Total energy + Delta-G solvation = -4055.152648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.49532 -41.39667 -40.43056 -38.47215 -37.53000 -36.96258 -34.96600 -34.83848 -32.67130 -31.76964 -30.79756 -29.16494 -28.11464 -25.10200 -24.80667 -24.46550 -23.98984 -22.47629 -20.33252 -19.76391 -19.09256 -18.67300 -17.93315 -17.82997 -17.73221 -17.20691 -16.97586 -16.83227 -16.72641 -16.18302 -15.87356 -15.26977 -14.84469 -14.71795 -14.55012 -14.40460 -13.92372 -13.86207 -13.76204 -13.61473 -13.44206 -13.30721 -13.08066 -12.88871 -12.71456 -12.52966 -12.50243 -12.24331 -12.05084 -11.88300 -11.77071 -11.70581 -11.54128 -11.20738 -10.72557 -10.67376 -9.55924 -9.15872 -8.25476 -6.40151 -0.73880 0.78043 1.27639 1.32144 1.34374 1.37225 1.49083 1.61678 1.75221 2.32688 2.46437 2.57376 3.04012 3.42776 3.44402 3.52984 3.70226 3.86863 3.94397 3.95508 4.12729 4.13628 4.36435 4.57071 4.60346 4.74412 4.80883 4.87108 4.92280 4.96126 5.00054 5.15500 5.17423 5.19023 5.30637 5.34092 5.52803 5.62685 5.77295 5.79129 6.02268 6.54267 6.68225 6.69308 6.91085 7.20825 7.35640 8.82527 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.002899 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.653422 B = 9656.234764 C =10725.550327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.971 3.029 10 H -0.269 1.269 11 H -0.264 1.264 12 H -0.282 1.282 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.059 3.941 16 O -0.334 6.334 17 C 0.521 3.479 18 O -0.536 6.536 19 C -0.333 4.333 20 C 0.107 3.893 21 C -0.253 4.253 22 C 0.233 3.767 23 C -0.133 4.133 24 N -0.594 5.594 25 H 0.428 0.572 26 C 0.517 3.483 27 O -0.566 6.566 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.033 0.967 34 H -0.005 1.005 35 H 0.268 0.732 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.167 0.833 39 H 0.206 0.794 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 -3.068 33.095 33.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.329 5.329 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.189 1.189 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.455 6.455 15 C -0.018 4.018 16 O -0.249 6.249 17 C 0.370 3.630 18 O -0.430 6.430 19 C -0.338 4.338 20 C 0.084 3.916 21 C -0.274 4.274 22 C 0.118 3.882 23 C -0.189 4.189 24 N -0.224 5.224 25 H 0.269 0.731 26 C 0.318 3.682 27 O -0.448 6.448 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.185 0.815 39 H 0.223 0.777 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.523 -2.565 32.168 32.461 hybrid contribution 0.845 0.499 -1.376 1.690 sum -2.679 -2.066 30.792 30.977 Atomic orbital electron populations 1.22174 0.94241 1.03877 1.01729 1.21871 0.95658 0.80888 1.04369 1.48212 1.63854 1.15324 1.05499 1.18793 0.95760 0.91489 0.79751 1.21721 0.97769 1.32216 1.06637 0.92983 1.25893 1.02659 0.94350 0.96327 1.70060 1.37750 1.34089 1.14841 0.85320 0.78666 0.78029 0.78483 1.19290 1.18865 1.20756 1.20586 0.78423 0.86668 0.85947 1.90713 1.46744 1.20335 1.87691 1.22812 1.04399 0.92094 0.82461 1.86906 1.78695 1.44438 1.14871 1.20872 0.73759 0.85376 0.83022 1.90776 1.45866 1.19381 1.86933 1.19887 1.25037 0.95787 0.93077 1.22364 0.80297 1.00234 0.88686 1.21015 1.12151 0.92738 1.01510 1.21896 0.85360 0.95255 0.85644 1.21494 1.05118 0.99453 0.92834 1.43692 1.54661 1.18017 1.06074 0.73132 1.17196 0.79696 0.87104 0.84249 1.91173 1.55188 1.74328 1.24144 0.92746 0.93614 0.88058 0.89740 0.88622 0.94945 0.98690 0.92291 0.86707 0.86211 0.81529 0.77736 0.86368 0.85432 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 10.24 71.98 0.74 -3.80 16 2 C 0.09 3.21 5.93 86.38 0.51 3.72 16 3 N -0.60 -28.47 2.46 -826.17 -2.03 -30.50 16 4 C 0.26 15.34 5.16 85.63 0.44 15.79 16 5 C -0.54 -33.60 9.39 25.60 0.24 -33.36 16 6 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -58.71 13.29 21.45 0.28 -58.42 16 9 Si 0.97 47.42 29.54 68.60 2.03 49.45 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 13 C 0.50 25.05 7.75 87.65 0.68 25.73 16 14 O -0.58 -36.17 16.08 15.74 0.25 -35.92 16 15 C 0.06 2.34 4.51 71.23 0.32 2.66 16 16 O -0.33 -14.79 7.95 -47.57 -0.38 -15.17 16 17 C 0.52 18.83 7.88 70.09 0.55 19.38 16 18 O -0.54 -18.58 16.18 19.61 0.32 -18.26 16 19 C -0.33 -9.36 5.92 -19.80 -0.12 -9.47 16 20 C 0.11 1.64 9.70 22.84 0.22 1.86 16 21 C -0.25 -1.48 9.58 21.99 0.21 -1.27 16 22 C 0.23 1.38 6.80 41.44 0.28 1.66 16 23 C -0.13 0.56 10.06 71.24 0.72 1.28 16 24 N -0.59 -9.29 5.22 -306.55 -1.60 -10.89 16 25 H 0.43 4.96 8.74 -92.72 -0.81 4.15 16 26 C 0.52 15.57 7.73 85.18 0.66 16.23 16 27 O -0.57 -24.96 16.05 15.63 0.25 -24.71 16 28 H 0.05 1.48 7.22 -2.39 -0.02 1.46 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.08 2.92 8.07 -2.39 -0.02 2.90 16 32 H 0.10 2.67 6.44 -2.39 -0.02 2.66 16 33 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16 34 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 35 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.12 3.93 7.40 -2.38 -0.02 3.91 16 37 H 0.12 3.96 7.18 -2.39 -0.02 3.94 16 38 H 0.17 2.01 7.69 -2.91 -0.02 1.99 16 39 H 0.21 -0.73 8.06 -2.91 -0.02 -0.76 16 40 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.13 -1.09 8.07 -2.38 -0.02 -1.10 16 42 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: -1.00 -103.72 367.23 5.29 -98.42 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.25 Total: 4.72 kcal Atomic # 6 Polarization: 35.36 SS G_CDS: 5.92 Total: 41.28 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -3.34 Total: -99.81 kcal Atomic # 8 Polarization: -94.51 SS G_CDS: 0.44 Total: -94.06 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -103.72 5.29 -98.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062282320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.886 kcal (2) G-P(sol) polarization free energy of solvation -103.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds