Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47036 * 2 1 4 4 C 1.36904 * 120.00008 * 65.98713 * 3 2 1 5 5 H 1.07997 * 120.00316 * 237.53402 * 4 3 2 6 6 C 1.39026 * 119.99566 * 57.53815 * 4 3 2 7 7 N 1.31376 * 120.00634 * 38.66998 * 6 4 3 8 8 Si 1.86806 * 119.99527 * 218.66701 * 6 4 3 9 9 H 1.48493 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46784 * 120.00041 * 8 6 4 11 11 H 1.48498 * 109.47305 * 239.99823 * 8 6 4 12 12 C 1.34773 * 119.99968 * 245.98889 * 3 2 1 13 13 O 1.21628 * 120.00047 * 191.62110 * 12 3 2 14 14 C 1.47500 * 120.00253 * 11.62010 * 12 3 2 15 15 C 1.39771 * 120.07385 * 28.09938 * 14 12 3 16 16 C 1.37769 * 119.99776 * 180.02562 * 15 14 12 17 17 C 1.38849 * 120.15403 * 359.97438 * 16 15 14 18 18 O 1.35806 * 119.92362 * 179.97438 * 17 16 15 19 19 C 1.42895 * 116.99793 * 359.97438 * 18 17 16 20 20 C 1.50701 * 109.47338 * 180.02562 * 19 18 17 21 21 N 1.34773 * 120.00601 * 180.02562 * 20 19 18 22 22 O 1.21285 * 119.99553 * 359.97438 * 20 19 18 23 23 C 1.39421 * 120.15665 * 0.02562 * 17 16 15 24 24 O 1.35996 * 120.00347 * 179.97438 * 23 17 16 25 25 C 1.42896 * 117.00305 * 180.02562 * 24 23 17 26 26 C 1.38130 * 119.99556 * 359.72335 * 23 17 16 27 27 H 1.09000 * 109.47059 * 100.67859 * 1 2 3 28 28 H 1.09008 * 109.46791 * 220.67212 * 1 2 3 29 29 H 1.08997 * 109.46729 * 340.67284 * 1 2 3 30 30 H 1.09002 * 109.46701 * 120.00459 * 2 1 3 31 31 H 1.09001 * 109.46953 * 240.00133 * 2 1 3 32 32 H 0.96994 * 120.00328 * 180.02562 * 7 6 4 33 33 H 1.08006 * 120.00127 * 0.02562 * 15 14 12 34 34 H 1.08000 * 119.92496 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.47372 * 300.00273 * 19 18 17 36 36 H 1.08998 * 109.47599 * 60.00271 * 19 18 17 37 37 H 0.97005 * 119.99419 * 359.97438 * 21 20 19 38 38 H 0.97000 * 120.00250 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47436 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.46823 * 300.00027 * 25 24 23 41 41 H 1.08997 * 109.47003 * 59.99607 * 25 24 23 42 42 H 1.07999 * 120.07554 * 180.27727 * 26 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7916 2.1874 1.0830 5 1 1.2638 3.1215 0.9598 6 6 2.2409 1.8035 2.3414 7 7 3.4056 1.2094 2.4702 8 14 1.1885 2.1325 3.8493 9 1 -0.0684 2.8079 3.4379 10 1 0.8633 0.8461 4.5162 11 1 1.9337 3.0045 4.7924 12 6 2.6907 1.8582 -1.0662 13 8 3.2768 2.9212 -0.9897 14 6 2.7160 1.0911 -2.3258 15 6 1.6543 0.2418 -2.6500 16 6 1.6797 -0.4743 -3.8267 17 6 2.7581 -0.3543 -4.6931 18 8 2.7786 -1.0628 -5.8515 19 6 1.6587 -1.9109 -6.1130 20 6 1.8566 -2.6118 -7.4324 21 7 0.9205 -3.4677 -7.8879 22 8 2.8579 -2.4050 -8.0846 23 6 3.8206 0.4910 -4.3760 24 8 4.8755 0.6058 -5.2266 25 6 5.9291 1.4894 -4.8380 26 6 3.7992 1.2159 -3.2004 27 1 -0.3633 -0.1904 -1.0099 28 1 -0.3633 -0.7795 0.6698 29 1 -0.3633 0.9697 0.3401 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7188 0.9413 3.3481 33 1 0.8140 0.1469 -1.9781 34 1 0.8586 -1.1299 -4.0763 35 1 1.5703 -2.6516 -5.3182 36 1 0.7497 -1.3107 -6.1529 37 1 0.1194 -3.6328 -7.3664 38 1 1.0477 -3.9185 -8.7373 39 1 6.7053 1.4880 -5.6031 40 1 5.5334 2.4987 -4.7243 41 1 6.3519 1.1561 -3.8903 42 1 4.6194 1.8745 -2.9557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = -86.001818 kcal Electronic energy + Delta-G solvation = -27382.733522 eV Core-core repulsion = 23330.369426 eV Total energy + Delta-G solvation = -4052.364096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65892 -39.70372 -38.63850 -38.11333 -36.05725 -35.06525 -34.06353 -32.33696 -30.30881 -30.20730 -29.45172 -28.30057 -27.17380 -25.11540 -22.95058 -22.42726 -22.03082 -20.88603 -19.65298 -18.50993 -17.91170 -17.42412 -16.62713 -16.57361 -16.54595 -16.14171 -15.48740 -15.38256 -15.13511 -14.85232 -14.34104 -14.32422 -14.27062 -13.68402 -13.45068 -13.15142 -13.07406 -12.49848 -12.38492 -12.06332 -11.89390 -11.62098 -11.23678 -11.17941 -11.12405 -11.09235 -10.88564 -10.78353 -10.53546 -10.35129 -10.21257 -10.09409 -10.05223 -8.84429 -8.51919 -8.37702 -7.57620 -7.30911 -6.39744 -4.07239 1.34188 1.57543 2.26173 2.52088 3.12438 3.25484 3.31251 3.44453 3.62773 3.63715 4.10873 4.41798 4.44098 4.70331 4.77805 4.79561 4.81821 4.98655 5.16286 5.26609 5.39208 5.51334 5.56341 5.57279 5.67736 5.71074 5.85286 6.05437 6.18485 6.21982 6.36162 6.44096 6.50265 6.74477 6.76959 6.78775 6.87687 6.99154 7.11728 7.54704 7.69116 7.88650 8.39263 8.56534 9.21829 9.30125 10.05494 10.58461 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.003286 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.549103 B = 8519.124118 C = 9729.632311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.434 5.434 4 C -0.344 4.344 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.819 5.819 8 Si 0.889 3.111 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.282 1.282 12 C 0.505 3.495 13 O -0.562 6.562 14 C -0.097 4.097 15 C -0.110 4.110 16 C -0.184 4.184 17 C 0.097 3.903 18 O -0.280 6.280 19 C 0.038 3.962 20 C 0.520 3.480 21 N -0.853 5.853 22 O -0.515 6.515 23 C 0.095 3.905 24 O -0.307 6.307 25 C 0.025 3.975 26 C -0.126 4.126 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.267 0.733 33 H 0.154 0.846 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.403 0.597 38 H 0.407 0.593 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -10.718 -14.089 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.035 4.035 3 N -0.154 5.154 4 C -0.470 4.470 5 H 0.100 0.900 6 C -0.142 4.142 7 N -0.450 5.450 8 Si 0.714 3.286 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.208 1.208 12 C 0.294 3.706 13 O -0.444 6.444 14 C -0.101 4.101 15 C -0.128 4.128 16 C -0.203 4.203 17 C 0.051 3.949 18 O -0.193 6.193 19 C -0.041 4.041 20 C 0.303 3.697 21 N -0.420 5.420 22 O -0.389 6.389 23 C 0.049 3.951 24 O -0.221 6.221 25 C -0.070 4.070 26 C -0.146 4.146 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.231 0.769 38 H 0.239 0.761 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.745 -10.088 -14.498 18.573 hybrid contribution -0.893 -0.259 1.139 1.470 sum -6.638 -10.347 -13.359 18.154 Atomic orbital electron populations 1.22268 0.97100 1.03397 0.99785 1.21896 0.93429 0.86399 1.01783 1.43225 1.47379 1.10339 1.14455 1.18883 1.37819 1.06247 0.84069 0.89963 1.25519 0.93268 0.95709 0.99695 1.70321 1.13867 1.35869 1.24985 0.86542 0.81760 0.78376 0.81966 1.18733 1.20415 1.20760 1.18487 0.80543 0.87219 0.84332 1.90627 1.44797 1.24718 1.84241 1.20330 0.94697 0.98429 0.96611 1.21845 0.99702 0.95165 0.96133 1.20916 0.98172 1.05111 0.96094 1.18302 0.94253 0.95140 0.87166 1.86185 1.41056 1.55524 1.36538 1.22408 0.90907 0.94889 0.95945 1.20135 0.83215 0.79339 0.87032 1.43661 1.23880 1.47842 1.26618 1.90823 1.27967 1.62039 1.58068 1.18034 0.88253 0.97691 0.91089 1.86160 1.28250 1.63199 1.44469 1.23074 0.88949 0.93254 1.01758 1.21180 1.00578 1.00371 0.92489 0.93512 0.92928 0.90431 0.92016 0.90863 0.92302 0.82929 0.84878 0.88849 0.88882 0.76893 0.76140 0.88421 0.92475 0.92511 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.73 37.16 0.36 -2.36 16 2 C 0.09 1.77 5.40 -4.04 -0.02 1.75 16 3 N -0.43 -10.73 2.55 -116.00 -0.30 -11.02 16 4 C -0.34 -9.30 7.49 -15.00 -0.11 -9.42 16 5 H 0.08 2.31 8.05 -52.49 -0.42 1.89 16 6 C 0.07 1.85 4.86 -17.45 -0.08 1.76 16 7 N -0.82 -22.73 13.86 55.50 0.77 -21.96 16 8 Si 0.89 19.60 29.68 -169.99 -5.05 14.55 16 9 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.51 12.77 7.33 -12.49 -0.09 12.67 16 13 O -0.56 -16.42 16.66 5.25 0.09 -16.34 16 14 C -0.10 -1.97 5.38 -104.97 -0.56 -2.54 16 15 C -0.11 -1.81 7.39 -39.18 -0.29 -2.10 16 16 C -0.18 -2.52 9.01 -39.53 -0.36 -2.87 16 17 C 0.10 1.53 6.71 -38.91 -0.26 1.27 16 18 O -0.28 -4.24 9.44 -46.81 -0.44 -4.69 16 19 C 0.04 0.36 5.21 36.01 0.19 0.54 16 20 C 0.52 5.34 8.18 -10.99 -0.09 5.25 16 21 N -0.85 -4.27 8.87 31.22 0.28 -3.99 16 22 O -0.52 -8.17 17.34 -14.36 -0.25 -8.42 16 23 C 0.09 1.67 6.69 -39.18 -0.26 1.40 16 24 O -0.31 -5.22 10.28 -34.38 -0.35 -5.57 16 25 C 0.02 0.33 9.81 101.05 0.99 1.32 16 26 C -0.13 -2.41 8.58 -39.04 -0.33 -2.74 16 27 H 0.05 0.62 6.18 -51.93 -0.32 0.29 16 28 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.08 1.41 7.21 -51.93 -0.37 1.04 16 30 H 0.06 1.34 7.85 -51.93 -0.41 0.94 16 31 H 0.07 1.32 4.46 -51.93 -0.23 1.09 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.15 2.34 3.15 -52.48 -0.17 2.18 16 34 H 0.13 1.24 6.27 -52.49 -0.33 0.91 16 35 H 0.09 0.64 7.65 -51.93 -0.40 0.24 16 36 H 0.09 0.63 7.65 -51.93 -0.40 0.23 16 37 H 0.40 0.60 8.83 -40.82 -0.36 0.24 16 38 H 0.41 1.69 8.93 -40.82 -0.36 1.33 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 41 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 42 H 0.14 2.74 6.11 -52.49 -0.32 2.42 16 LS Contribution 354.02 15.07 5.33 5.33 Total: -1.00 -38.30 354.02 -5.71 -44.01 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.87 Total: 4.14 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -0.93 Total: 3.95 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.75 Total: -36.98 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.96 Total: -35.01 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.05 Total: 14.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.30 -5.71 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.987 kcal (2) G-P(sol) polarization free energy of solvation -38.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds