Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47036 * 2 1 4 4 C 1.36904 * 120.00008 * 65.98713 * 3 2 1 5 5 H 1.07997 * 120.00316 * 237.53402 * 4 3 2 6 6 C 1.39026 * 119.99566 * 57.53815 * 4 3 2 7 7 N 1.31376 * 120.00634 * 38.66998 * 6 4 3 8 8 Si 1.86806 * 119.99527 * 218.66701 * 6 4 3 9 9 H 1.48493 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46784 * 120.00041 * 8 6 4 11 11 H 1.48498 * 109.47305 * 239.99823 * 8 6 4 12 12 C 1.34773 * 119.99968 * 245.98889 * 3 2 1 13 13 O 1.21628 * 120.00047 * 191.62110 * 12 3 2 14 14 C 1.47500 * 120.00253 * 11.62010 * 12 3 2 15 15 C 1.39771 * 120.07385 * 28.09938 * 14 12 3 16 16 C 1.37769 * 119.99776 * 180.02562 * 15 14 12 17 17 C 1.38849 * 120.15403 * 359.97438 * 16 15 14 18 18 O 1.35806 * 119.92362 * 179.97438 * 17 16 15 19 19 C 1.42895 * 116.99793 * 359.97438 * 18 17 16 20 20 C 1.50701 * 109.47338 * 180.02562 * 19 18 17 21 21 N 1.34773 * 120.00601 * 180.02562 * 20 19 18 22 22 O 1.21285 * 119.99553 * 359.97438 * 20 19 18 23 23 C 1.39421 * 120.15665 * 0.02562 * 17 16 15 24 24 O 1.35996 * 120.00347 * 179.97438 * 23 17 16 25 25 C 1.42896 * 117.00305 * 180.02562 * 24 23 17 26 26 C 1.38130 * 119.99556 * 359.72335 * 23 17 16 27 27 H 1.09000 * 109.47059 * 100.67859 * 1 2 3 28 28 H 1.09008 * 109.46791 * 220.67212 * 1 2 3 29 29 H 1.08997 * 109.46729 * 340.67284 * 1 2 3 30 30 H 1.09002 * 109.46701 * 120.00459 * 2 1 3 31 31 H 1.09001 * 109.46953 * 240.00133 * 2 1 3 32 32 H 0.96994 * 120.00328 * 180.02562 * 7 6 4 33 33 H 1.08006 * 120.00127 * 0.02562 * 15 14 12 34 34 H 1.08000 * 119.92496 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.47372 * 300.00273 * 19 18 17 36 36 H 1.08998 * 109.47599 * 60.00271 * 19 18 17 37 37 H 0.97005 * 119.99419 * 359.97438 * 21 20 19 38 38 H 0.97000 * 120.00250 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47436 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.46823 * 300.00027 * 25 24 23 41 41 H 1.08997 * 109.47003 * 59.99607 * 25 24 23 42 42 H 1.07999 * 120.07554 * 180.27727 * 26 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7916 2.1874 1.0830 5 1 1.2638 3.1215 0.9598 6 6 2.2409 1.8035 2.3414 7 7 3.4056 1.2094 2.4702 8 14 1.1885 2.1325 3.8493 9 1 -0.0684 2.8079 3.4379 10 1 0.8633 0.8461 4.5162 11 1 1.9337 3.0045 4.7924 12 6 2.6907 1.8582 -1.0662 13 8 3.2768 2.9212 -0.9897 14 6 2.7160 1.0911 -2.3258 15 6 1.6543 0.2418 -2.6500 16 6 1.6797 -0.4743 -3.8267 17 6 2.7581 -0.3543 -4.6931 18 8 2.7786 -1.0628 -5.8515 19 6 1.6587 -1.9109 -6.1130 20 6 1.8566 -2.6118 -7.4324 21 7 0.9205 -3.4677 -7.8879 22 8 2.8579 -2.4050 -8.0846 23 6 3.8206 0.4910 -4.3760 24 8 4.8755 0.6058 -5.2266 25 6 5.9291 1.4894 -4.8380 26 6 3.7992 1.2159 -3.2004 27 1 -0.3633 -0.1904 -1.0099 28 1 -0.3633 -0.7795 0.6698 29 1 -0.3633 0.9697 0.3401 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7188 0.9413 3.3481 33 1 0.8140 0.1469 -1.9781 34 1 0.8586 -1.1299 -4.0763 35 1 1.5703 -2.6516 -5.3182 36 1 0.7497 -1.3107 -6.1529 37 1 0.1194 -3.6328 -7.3664 38 1 1.0477 -3.9185 -8.7373 39 1 6.7053 1.4880 -5.6031 40 1 5.5334 2.4987 -4.7243 41 1 6.3519 1.1561 -3.8903 42 1 4.6194 1.8745 -2.9557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = -116.321184 kcal Electronic energy + Delta-G solvation = -27384.048268 eV Core-core repulsion = 23330.369426 eV Total energy + Delta-G solvation = -4053.678842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88431 -40.75764 -40.19021 -39.20908 -37.46069 -36.94560 -34.73685 -34.24477 -31.63721 -31.55257 -30.94961 -29.25955 -28.39721 -26.92903 -24.41821 -23.65612 -23.47603 -21.81424 -21.17731 -19.66499 -18.93392 -18.62798 -18.41948 -17.45402 -17.42568 -17.39192 -16.98103 -16.81821 -16.59253 -16.32261 -15.84349 -15.48650 -15.28110 -15.22062 -14.95929 -14.63154 -14.33886 -13.78889 -13.60128 -13.56511 -13.33003 -13.23371 -12.89556 -12.72171 -12.47978 -12.29679 -12.21330 -12.13181 -12.07694 -11.96113 -11.52132 -11.06647 -10.83127 -10.69725 -10.35708 -9.81335 -9.29009 -8.86609 -8.37504 -6.15437 -0.03769 0.28807 1.36844 1.43457 1.54136 1.58845 1.69499 2.06762 2.27907 2.31824 2.68796 2.84582 2.91725 3.09544 3.73834 3.88459 3.91367 4.03430 4.09941 4.19821 4.20640 4.26312 4.30825 4.30889 4.38682 4.59534 4.62202 4.65509 4.77616 4.88974 5.08725 5.18847 5.28959 5.41003 5.50494 5.51694 5.62630 5.84594 5.99389 6.29687 6.39835 6.53939 6.67233 7.22624 7.32042 7.39551 8.11563 8.60277 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.003286 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.549103 B = 8519.124118 C = 9729.632311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.087 3.913 3 N -0.443 5.443 4 C -0.370 4.370 5 H 0.059 0.941 6 C 0.029 3.971 7 N -0.864 5.864 8 Si 0.965 3.035 9 H -0.256 1.256 10 H -0.261 1.261 11 H -0.285 1.285 12 C 0.490 3.510 13 O -0.625 6.625 14 C -0.131 4.131 15 C -0.099 4.099 16 C -0.160 4.160 17 C 0.111 3.889 18 O -0.306 6.306 19 C 0.024 3.976 20 C 0.517 3.483 21 N -0.824 5.824 22 O -0.585 6.585 23 C 0.079 3.921 24 O -0.322 6.322 25 C 0.020 3.980 26 C -0.138 4.138 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.273 0.727 33 H 0.168 0.832 34 H 0.194 0.806 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.424 0.576 38 H 0.413 0.587 39 H 0.127 0.873 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -13.700 -14.963 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.035 4.035 3 N -0.162 5.162 4 C -0.496 4.496 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.496 5.496 8 Si 0.787 3.213 9 H -0.179 1.179 10 H -0.185 1.185 11 H -0.211 1.211 12 C 0.281 3.719 13 O -0.512 6.512 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.178 4.178 17 C 0.064 3.936 18 O -0.219 6.219 19 C -0.054 4.054 20 C 0.301 3.699 21 N -0.391 5.391 22 O -0.464 6.464 23 C 0.034 3.966 24 O -0.236 6.236 25 C -0.074 4.074 26 C -0.158 4.158 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.185 0.815 34 H 0.211 0.789 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.256 0.744 38 H 0.246 0.754 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.261 -13.145 -15.368 22.243 hybrid contribution 0.176 0.580 1.216 1.358 sum -9.085 -12.566 -14.153 20.993 Atomic orbital electron populations 1.22189 0.93621 1.02983 1.02890 1.22093 0.96247 0.83459 1.01694 1.43547 1.47112 1.11767 1.13730 1.18907 1.38401 1.06711 0.85629 0.92335 1.26409 0.93843 0.95254 1.02416 1.70371 1.15416 1.37716 1.26125 0.85395 0.79682 0.78800 0.77432 1.17930 1.18513 1.21147 1.19322 0.79443 0.86885 0.86252 1.90555 1.47368 1.27509 1.85722 1.19979 0.97384 1.00851 0.95200 1.21959 0.98422 0.94002 0.97351 1.21398 0.98617 1.04071 0.93677 1.18477 0.93698 0.93816 0.87569 1.86169 1.43937 1.55998 1.35798 1.22941 0.90342 0.95593 0.96517 1.20432 0.82898 0.79514 0.87042 1.43450 1.23334 1.45626 1.26699 1.90809 1.30932 1.64663 1.60005 1.18223 0.89375 0.98353 0.90680 1.86138 1.28778 1.63955 1.44746 1.23278 0.88805 0.92603 1.02743 1.21014 1.00237 1.01060 0.93447 0.89496 0.90515 0.92745 0.94391 0.88696 0.91748 0.81499 0.78858 0.85039 0.85070 0.74364 0.75395 0.85451 0.92724 0.92836 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 9.73 71.98 0.70 -4.02 16 2 C 0.09 3.44 5.40 86.38 0.47 3.91 16 3 N -0.44 -22.63 2.55 -639.17 -1.63 -24.25 16 4 C -0.37 -20.85 7.49 84.09 0.63 -20.22 16 5 H 0.06 3.50 8.05 -2.91 -0.02 3.47 16 6 C 0.03 1.59 4.86 84.95 0.41 2.00 16 7 N -0.86 -49.50 13.86 21.68 0.30 -49.20 16 8 Si 0.97 40.87 29.68 68.60 2.04 42.91 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 10 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.49 26.07 7.33 86.69 0.64 26.71 16 13 O -0.62 -39.40 16.66 -4.12 -0.07 -39.46 16 14 C -0.13 -5.41 5.38 -20.09 -0.11 -5.52 16 15 C -0.10 -2.98 7.39 22.53 0.17 -2.81 16 16 C -0.16 -3.58 9.01 22.31 0.20 -3.37 16 17 C 0.11 3.18 6.71 22.70 0.15 3.34 16 18 O -0.31 -8.31 9.44 -64.91 -0.61 -8.92 16 19 C 0.02 0.33 5.21 71.24 0.37 0.70 16 20 C 0.52 8.95 8.18 87.66 0.72 9.67 16 21 N -0.82 -4.90 8.87 -173.53 -1.54 -6.44 16 22 O -0.58 -17.94 17.34 15.99 0.28 -17.67 16 23 C 0.08 2.77 6.69 22.53 0.15 2.92 16 24 O -0.32 -11.07 10.28 -79.49 -0.82 -11.89 16 25 C 0.02 0.55 9.81 113.37 1.11 1.67 16 26 C -0.14 -5.47 8.58 22.62 0.19 -5.27 16 27 H 0.09 1.85 6.18 -2.39 -0.01 1.84 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.05 1.90 7.21 -2.39 -0.02 1.88 16 30 H 0.04 1.65 7.85 -2.39 -0.02 1.64 16 31 H 0.10 3.26 4.46 -2.39 -0.01 3.25 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.17 4.46 3.15 -2.91 -0.01 4.45 16 34 H 0.19 1.95 6.27 -2.91 -0.02 1.94 16 35 H 0.13 0.86 7.65 -2.39 -0.02 0.84 16 36 H 0.13 0.86 7.65 -2.39 -0.02 0.84 16 37 H 0.42 -1.00 8.83 -92.70 -0.82 -1.82 16 38 H 0.41 2.08 8.93 -92.71 -0.83 1.25 16 39 H 0.13 2.62 8.14 -2.39 -0.02 2.61 16 40 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 41 H 0.05 1.47 7.67 -2.39 -0.02 1.45 16 42 H 0.12 5.24 6.11 -2.91 -0.02 5.23 16 Total: -1.00 -93.35 354.02 3.21 -90.14 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -0.54 Total: 15.11 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.80 Total: 9.69 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.87 Total: -79.90 kcal Atomic # 8 Polarization: -76.73 SS G_CDS: -1.22 Total: -77.95 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.04 Total: 42.91 kcal Total: -93.35 3.21 -90.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.182 kcal (2) G-P(sol) polarization free energy of solvation -93.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds