Wall clock time and date at job start Fri Apr 10 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36947 * 119.99711 * 2 1 4 4 H 1.07994 * 119.99742 * 200.27822 * 3 2 1 5 5 C 1.38806 * 120.00123 * 20.27261 * 3 2 1 6 6 N 1.31628 * 119.99905 * 15.01974 * 5 3 2 7 7 Si 1.86800 * 120.00122 * 195.01994 * 5 3 2 8 8 H 1.48504 * 109.47086 * 85.00274 * 7 5 3 9 9 H 1.48498 * 109.46941 * 205.00230 * 7 5 3 10 10 H 1.48496 * 109.46944 * 325.00483 * 7 5 3 11 11 C 1.46495 * 120.00341 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47229 * 269.99985 * 11 2 1 13 13 O 1.21286 * 119.99698 * 359.97438 * 12 11 2 14 14 N 1.34775 * 120.00109 * 179.97438 * 12 11 2 15 15 C 1.46498 * 119.99864 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47112 * 179.97438 * 15 14 12 17 17 O 1.42901 * 109.46916 * 65.00255 * 16 15 14 18 18 C 1.35982 * 117.00117 * 179.97438 * 17 16 15 19 19 C 1.38692 * 119.98429 * 0.02562 * 18 17 16 20 20 C 1.38221 * 120.08129 * 179.75354 * 19 18 17 21 21 C 1.38529 * 120.09878 * 0.44611 * 20 19 18 22 22 C 1.39260 * 119.91854 * 359.54787 * 21 20 19 23 23 C 1.38523 * 119.87731 * 0.23393 * 22 21 20 24 24 O 1.36506 * 108.64256 * 180.24791 * 22 21 20 25 25 C 1.43972 * 105.50340 * 342.70466 * 24 22 21 26 26 O 1.36603 * 131.46058 * 179.85552 * 21 20 19 27 27 H 1.08992 * 109.47109 * 275.09943 * 1 2 3 28 28 H 1.09000 * 109.46963 * 35.10414 * 1 2 3 29 29 H 1.09002 * 109.46883 * 155.09999 * 1 2 3 30 30 H 0.97003 * 119.99554 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.47243 * 149.99949 * 11 2 1 32 32 H 1.09004 * 109.47051 * 30.00121 * 11 2 1 33 33 H 0.96999 * 120.00262 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.47201 * 60.00212 * 15 14 12 35 35 H 1.09004 * 109.47296 * 300.00259 * 15 14 12 36 36 H 1.08996 * 109.47269 * 305.00407 * 16 15 14 37 37 H 1.09001 * 109.47489 * 184.99717 * 16 15 14 38 38 H 1.07999 * 119.96209 * 0.02562 * 19 18 17 39 39 H 1.08002 * 119.95039 * 180.33527 * 20 19 18 40 40 H 1.08004 * 120.00191 * 180.02562 * 23 22 21 41 41 H 1.09005 * 110.57617 * 268.57934 * 25 24 22 42 42 H 1.09002 * 110.57538 * 145.70991 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1795 1.2150 -0.3241 5 6 1.5201 2.3509 0.4165 6 7 0.3863 2.2844 1.0819 7 14 2.2819 4.0128 0.0328 8 1 1.8687 4.4447 -1.3266 9 1 1.8206 5.0110 1.0308 10 1 3.7618 3.9038 0.0892 11 6 2.1976 -1.2686 0.0006 12 6 2.4488 -1.7030 1.4216 13 8 2.0551 -1.0198 2.3431 14 7 3.1110 -2.8507 1.6684 15 6 3.3546 -3.2732 3.0497 16 6 4.1187 -4.5987 3.0504 17 8 5.4145 -4.4018 2.4811 18 6 6.2279 -5.4890 2.4068 19 6 5.7859 -6.7185 2.8721 20 6 6.6091 -7.8260 2.7929 21 6 7.8812 -7.7091 2.2571 22 6 8.3272 -6.4756 1.7892 23 6 7.4987 -5.3681 1.8655 24 8 9.5969 -6.6236 1.3104 25 6 10.0740 -7.8649 1.8622 26 8 8.8725 -8.6304 2.0714 27 1 -0.3633 0.0913 1.0235 28 1 -0.3633 0.8407 -0.5910 29 1 -0.3633 -0.9322 -0.4327 30 1 -0.0534 3.0985 1.3732 31 1 3.1500 -1.1385 -0.5133 32 1 1.6085 -2.0286 -0.5130 33 1 3.4262 -3.3969 0.9314 34 1 2.4021 -3.4032 3.5634 35 1 3.9438 -2.5135 3.5635 36 1 3.5710 -5.3341 2.4611 37 1 4.2225 -4.9579 4.0743 38 1 4.7956 -6.8116 3.2928 39 1 6.2607 -8.7835 3.1509 40 1 7.8423 -4.4105 1.5028 41 1 10.5872 -7.6915 2.8082 42 1 10.7321 -8.3705 1.1555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:14 Heat of formation + Delta-G solvation = -67.930846 kcal Electronic energy + Delta-G solvation = -26091.575067 eV Core-core repulsion = 22039.994587 eV Total energy + Delta-G solvation = -4051.580480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49990 -40.13320 -38.69577 -36.90796 -36.61260 -35.17020 -34.10464 -31.35564 -31.11727 -30.06459 -29.09772 -26.87548 -26.13203 -25.71392 -23.97530 -23.15736 -22.27463 -21.32783 -19.70289 -19.04632 -18.27091 -17.82387 -17.21973 -16.72168 -16.44221 -16.23573 -16.01536 -15.44376 -14.98370 -14.81700 -14.54653 -14.43412 -14.22043 -13.54753 -13.43066 -13.33131 -13.29710 -13.08113 -13.04911 -12.78318 -12.30910 -12.08990 -11.68510 -11.65480 -11.20741 -11.07506 -10.79460 -10.63684 -10.59514 -10.31494 -9.95456 -9.81819 -9.14630 -9.00618 -8.52177 -8.41721 -8.14563 -6.72554 -5.63126 -3.07704 0.74286 0.87786 2.21250 2.82453 3.18122 3.27054 3.44117 3.50078 3.52212 3.63195 3.74245 4.11089 4.27707 4.41968 4.49960 4.57607 4.58125 4.73208 4.82615 4.85401 4.98621 5.13896 5.30740 5.50383 5.63277 5.64456 5.66153 5.73119 5.78623 5.85938 5.88054 6.07021 6.20627 6.35957 6.66344 6.76836 6.94621 7.05049 7.42856 7.81031 7.90510 8.13818 8.45021 9.16160 9.29605 9.91552 10.38072 11.41672 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002123 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.601651 B =13187.682568 C =13908.915513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.573 5.573 3 C -0.257 4.257 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.897 5.897 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.133 3.867 12 C 0.469 3.531 13 O -0.510 6.510 14 N -0.748 5.748 15 C 0.122 3.878 16 C 0.049 3.951 17 O -0.301 6.301 18 C 0.151 3.849 19 C -0.202 4.202 20 C -0.058 4.058 21 C -0.013 4.013 22 C 0.074 3.926 23 C -0.135 4.135 24 O -0.306 6.306 25 C 0.214 3.786 26 O -0.310 6.310 27 H 0.034 0.966 28 H 0.047 0.953 29 H -0.003 1.003 30 H 0.252 0.748 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.394 0.606 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.515 -24.639 3.032 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.293 5.293 3 C -0.387 4.387 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.540 5.540 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.000 4.000 12 C 0.253 3.747 13 O -0.381 6.381 14 N -0.406 5.406 15 C -0.003 4.003 16 C -0.026 4.026 17 O -0.214 6.214 18 C 0.104 3.896 19 C -0.221 4.221 20 C -0.076 4.076 21 C -0.057 4.057 22 C 0.029 3.971 23 C -0.155 4.155 24 O -0.222 6.222 25 C 0.102 3.898 26 O -0.227 6.227 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.227 0.773 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.217 -23.803 3.566 27.954 hybrid contribution 0.775 0.299 -0.074 0.834 sum 14.992 -23.504 3.492 28.096 Atomic orbital electron populations 1.20855 0.81959 0.95407 0.99925 1.43913 1.02111 0.99841 1.83443 1.19160 0.97199 0.84483 1.37822 0.91202 1.25030 0.97908 0.98468 0.97940 1.70131 1.18593 1.26628 1.38674 0.86254 0.78692 0.83967 0.77471 1.21410 1.21770 1.20567 1.21003 0.98013 0.90285 0.90711 1.23683 0.76455 0.78955 0.95563 1.90706 1.48786 1.52241 1.46396 1.46542 1.61290 1.26152 1.06660 1.21241 0.98679 0.93615 0.86748 1.23248 0.81232 0.99336 0.98809 1.86195 1.26086 1.31574 1.77572 1.18364 0.89807 0.86350 0.95054 1.21037 1.01731 0.91590 1.07743 1.19792 0.89906 0.99692 0.98240 1.19651 0.93314 0.86924 1.05817 1.19299 0.86240 0.94189 0.97348 1.19034 0.91785 0.97870 1.06781 1.87379 1.26021 1.41247 1.67523 1.25626 0.87659 0.76976 0.99527 1.87368 1.16740 1.29912 1.88675 0.94734 0.93463 0.98446 0.93822 0.90833 0.91528 0.77304 0.89848 0.90921 0.90987 0.90455 0.83835 0.84421 0.83624 0.89854 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 9.02 59.85 0.54 4.74 16 2 N -0.57 -15.01 2.42 -182.50 -0.44 -15.45 16 3 C -0.26 -7.37 9.68 -15.06 -0.15 -7.51 16 4 H 0.07 1.94 7.86 -52.49 -0.41 1.53 16 5 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 6 N -0.90 -27.55 10.66 55.49 0.59 -26.95 16 7 Si 0.91 22.69 29.58 -169.99 -5.03 17.66 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 C 0.13 2.71 6.19 -5.20 -0.03 2.68 16 12 C 0.47 9.69 7.90 -10.99 -0.09 9.60 16 13 O -0.51 -13.46 16.43 5.55 0.09 -13.37 16 14 N -0.75 -11.08 5.50 -60.30 -0.33 -11.42 16 15 C 0.12 1.54 6.06 -4.05 -0.02 1.52 16 16 C 0.05 0.43 4.87 37.16 0.18 0.61 16 17 O -0.30 -3.24 10.08 -19.69 -0.20 -3.44 16 18 C 0.15 1.50 6.68 -39.26 -0.26 1.23 16 19 C -0.20 -1.62 9.03 -39.42 -0.36 -1.98 16 20 C -0.06 -0.47 10.05 -39.48 -0.40 -0.87 16 21 C -0.01 -0.13 7.15 -39.09 -0.28 -0.41 16 22 C 0.07 0.78 7.15 -39.10 -0.28 0.51 16 23 C -0.14 -1.42 10.00 -39.32 -0.39 -1.82 16 24 O -0.31 -3.06 11.40 -45.71 -0.52 -3.58 16 25 C 0.21 1.43 8.89 101.05 0.90 2.32 16 26 O -0.31 -2.92 11.41 -46.03 -0.53 -3.44 16 27 H 0.03 0.99 7.40 -51.93 -0.38 0.61 16 28 H 0.05 1.28 7.21 -51.93 -0.37 0.90 16 29 H 0.00 -0.07 7.84 -51.93 -0.41 -0.47 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 32 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 33 H 0.39 4.68 8.47 -40.82 -0.35 4.33 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 37 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 38 H 0.14 0.81 6.29 -52.49 -0.33 0.48 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -37.61 359.80 -7.21 -44.82 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.55 Total: -0.95 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.73 Total: 10.70 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.18 Total: -53.82 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.15 Total: -23.84 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.61 -7.21 -44.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.109 kcal (2) G-P(sol) polarization free energy of solvation -37.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds