Wall clock time and date at job start Fri Apr 10 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36947 * 119.99711 * 2 1 4 4 H 1.07994 * 119.99742 * 200.27822 * 3 2 1 5 5 C 1.38806 * 120.00123 * 20.27261 * 3 2 1 6 6 N 1.31628 * 119.99905 * 15.01974 * 5 3 2 7 7 Si 1.86800 * 120.00122 * 195.01994 * 5 3 2 8 8 H 1.48504 * 109.47086 * 85.00274 * 7 5 3 9 9 H 1.48498 * 109.46941 * 205.00230 * 7 5 3 10 10 H 1.48496 * 109.46944 * 325.00483 * 7 5 3 11 11 C 1.46495 * 120.00341 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47229 * 269.99985 * 11 2 1 13 13 O 1.21286 * 119.99698 * 359.97438 * 12 11 2 14 14 N 1.34775 * 120.00109 * 179.97438 * 12 11 2 15 15 C 1.46498 * 119.99864 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47112 * 179.97438 * 15 14 12 17 17 O 1.42901 * 109.46916 * 65.00255 * 16 15 14 18 18 C 1.35982 * 117.00117 * 179.97438 * 17 16 15 19 19 C 1.38692 * 119.98429 * 0.02562 * 18 17 16 20 20 C 1.38221 * 120.08129 * 179.75354 * 19 18 17 21 21 C 1.38529 * 120.09878 * 0.44611 * 20 19 18 22 22 C 1.39260 * 119.91854 * 359.54787 * 21 20 19 23 23 C 1.38523 * 119.87731 * 0.23393 * 22 21 20 24 24 O 1.36506 * 108.64256 * 180.24791 * 22 21 20 25 25 C 1.43972 * 105.50340 * 342.70466 * 24 22 21 26 26 O 1.36603 * 131.46058 * 179.85552 * 21 20 19 27 27 H 1.08992 * 109.47109 * 275.09943 * 1 2 3 28 28 H 1.09000 * 109.46963 * 35.10414 * 1 2 3 29 29 H 1.09002 * 109.46883 * 155.09999 * 1 2 3 30 30 H 0.97003 * 119.99554 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.47243 * 149.99949 * 11 2 1 32 32 H 1.09004 * 109.47051 * 30.00121 * 11 2 1 33 33 H 0.96999 * 120.00262 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.47201 * 60.00212 * 15 14 12 35 35 H 1.09004 * 109.47296 * 300.00259 * 15 14 12 36 36 H 1.08996 * 109.47269 * 305.00407 * 16 15 14 37 37 H 1.09001 * 109.47489 * 184.99717 * 16 15 14 38 38 H 1.07999 * 119.96209 * 0.02562 * 19 18 17 39 39 H 1.08002 * 119.95039 * 180.33527 * 20 19 18 40 40 H 1.08004 * 120.00191 * 180.02562 * 23 22 21 41 41 H 1.09005 * 110.57617 * 268.57934 * 25 24 22 42 42 H 1.09002 * 110.57538 * 145.70991 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1795 1.2150 -0.3241 5 6 1.5201 2.3509 0.4165 6 7 0.3863 2.2844 1.0819 7 14 2.2819 4.0128 0.0328 8 1 1.8687 4.4447 -1.3266 9 1 1.8206 5.0110 1.0308 10 1 3.7618 3.9038 0.0892 11 6 2.1976 -1.2686 0.0006 12 6 2.4488 -1.7030 1.4216 13 8 2.0551 -1.0198 2.3431 14 7 3.1110 -2.8507 1.6684 15 6 3.3546 -3.2732 3.0497 16 6 4.1187 -4.5987 3.0504 17 8 5.4145 -4.4018 2.4811 18 6 6.2279 -5.4890 2.4068 19 6 5.7859 -6.7185 2.8721 20 6 6.6091 -7.8260 2.7929 21 6 7.8812 -7.7091 2.2571 22 6 8.3272 -6.4756 1.7892 23 6 7.4987 -5.3681 1.8655 24 8 9.5969 -6.6236 1.3104 25 6 10.0740 -7.8649 1.8622 26 8 8.8725 -8.6304 2.0714 27 1 -0.3633 0.0913 1.0235 28 1 -0.3633 0.8407 -0.5910 29 1 -0.3633 -0.9322 -0.4327 30 1 -0.0534 3.0985 1.3732 31 1 3.1500 -1.1385 -0.5133 32 1 1.6085 -2.0286 -0.5130 33 1 3.4262 -3.3969 0.9314 34 1 2.4021 -3.4032 3.5634 35 1 3.9438 -2.5135 3.5635 36 1 3.5710 -5.3341 2.4611 37 1 4.2225 -4.9579 4.0743 38 1 4.7956 -6.8116 3.2928 39 1 6.2607 -8.7835 3.1509 40 1 7.8423 -4.4105 1.5028 41 1 10.5872 -7.6915 2.8082 42 1 10.7321 -8.3705 1.1555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:13 Heat of formation + Delta-G solvation = -96.123815 kcal Electronic energy + Delta-G solvation = -26092.797606 eV Core-core repulsion = 22039.994587 eV Total energy + Delta-G solvation = -4052.803019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.13571 -40.93461 -40.22622 -37.69301 -37.27806 -37.02309 -35.51903 -33.30024 -31.98919 -31.04395 -29.95591 -28.48303 -27.81276 -26.68676 -24.92087 -23.89906 -23.56140 -22.68603 -21.28117 -19.74836 -18.90726 -18.80644 -18.48468 -18.01399 -17.66667 -17.34264 -16.77080 -16.74268 -16.34179 -16.03104 -15.71237 -15.47074 -15.26893 -14.88483 -14.87269 -14.66301 -14.18353 -14.05146 -13.94329 -13.75863 -13.61622 -13.51493 -13.04034 -12.89412 -12.76319 -12.51459 -12.36419 -12.20554 -12.02244 -11.88666 -11.86175 -11.25320 -10.86086 -10.49280 -9.91123 -9.83730 -8.82256 -8.80652 -7.79920 -5.27082 0.06972 0.18924 1.45622 1.48042 1.56108 1.56936 1.99849 2.18279 2.41227 2.52978 2.55539 2.66158 3.35978 3.45297 3.71195 3.73418 3.80720 3.89847 4.01589 4.12631 4.14289 4.28668 4.32356 4.38845 4.47422 4.55197 4.64541 4.75082 4.80297 4.83338 4.90350 5.03297 5.07426 5.18909 5.24473 5.31986 5.62344 5.65896 5.76641 6.01134 6.30008 6.34875 6.80750 7.15083 7.61639 7.88311 8.27542 9.23821 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002123 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.601651 B =13187.682568 C =13908.915513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.595 5.595 3 C -0.262 4.262 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.935 5.935 7 Si 0.972 3.028 8 H -0.277 1.277 9 H -0.299 1.299 10 H -0.271 1.271 11 C 0.126 3.874 12 C 0.472 3.528 13 O -0.577 6.577 14 N -0.724 5.724 15 C 0.119 3.881 16 C 0.056 3.944 17 O -0.322 6.322 18 C 0.142 3.858 19 C -0.191 4.191 20 C -0.056 4.056 21 C -0.026 4.026 22 C 0.056 3.944 23 C -0.154 4.154 24 O -0.326 6.326 25 C 0.205 3.795 26 O -0.323 6.323 27 H -0.007 1.007 28 H 0.022 0.978 29 H 0.040 0.960 30 H 0.245 0.755 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.413 0.587 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.553 -27.333 2.612 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.315 5.315 3 C -0.393 4.393 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.581 5.581 7 Si 0.800 3.200 8 H -0.204 1.204 9 H -0.226 1.226 10 H -0.196 1.196 11 C -0.005 4.005 12 C 0.257 3.743 13 O -0.454 6.454 14 N -0.381 5.381 15 C -0.005 4.005 16 C -0.019 4.019 17 O -0.236 6.236 18 C 0.096 3.904 19 C -0.209 4.209 20 C -0.074 4.074 21 C -0.070 4.070 22 C 0.012 3.988 23 C -0.173 4.173 24 O -0.243 6.243 25 C 0.095 3.905 26 O -0.240 6.240 27 H 0.012 0.988 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.249 0.751 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.191 0.809 39 H 0.181 0.819 40 H 0.156 0.844 41 H 0.120 0.880 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 15.326 -26.597 3.109 30.854 hybrid contribution 0.568 0.934 0.052 1.095 sum 15.894 -25.663 3.161 30.352 Atomic orbital electron populations 1.20564 0.82356 0.96455 0.97315 1.44077 1.02345 1.01176 1.83911 1.19537 0.97361 0.85872 1.36487 0.90732 1.25875 0.98756 1.02129 0.98551 1.70333 1.20281 1.26862 1.40586 0.85219 0.78169 0.79426 0.77206 1.20357 1.22588 1.19561 1.21261 0.99117 0.89122 0.91006 1.23336 0.76361 0.79807 0.94771 1.90699 1.51958 1.54735 1.48013 1.46130 1.58924 1.24353 1.08684 1.21355 0.99272 0.95188 0.84711 1.23274 0.80369 0.97112 1.01124 1.86144 1.26903 1.32488 1.78086 1.18421 0.89486 0.86839 0.95674 1.21342 1.02740 0.90427 1.06397 1.20171 0.89120 1.00896 0.97248 1.19965 0.94125 0.86742 1.06135 1.19462 0.86642 0.94666 0.98065 1.19130 0.92626 0.97797 1.07775 1.87339 1.26060 1.42752 1.68102 1.26099 0.87084 0.75985 1.01355 1.87334 1.17427 1.30454 1.88785 0.98847 0.95887 0.94202 0.94591 0.88948 0.87439 0.75093 0.89476 0.93382 0.88148 0.87552 0.80852 0.81886 0.84448 0.87970 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.26 9.02 127.77 1.15 10.41 16 2 N -0.59 -30.98 2.42 -731.31 -1.77 -32.75 16 3 C -0.26 -15.11 9.68 84.03 0.81 -14.30 16 4 H 0.07 4.11 7.86 -2.91 -0.02 4.09 16 5 C -0.06 -3.46 5.06 84.86 0.43 -3.03 16 6 N -0.93 -59.47 10.66 21.65 0.23 -59.23 16 7 Si 0.97 47.50 29.58 68.60 2.03 49.53 16 8 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 9 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 C 0.13 4.89 6.19 85.63 0.53 5.42 16 12 C 0.47 19.05 7.90 87.66 0.69 19.74 16 13 O -0.58 -31.03 16.43 -3.05 -0.05 -31.08 16 14 N -0.72 -19.94 5.50 -463.07 -2.55 -22.49 16 15 C 0.12 2.80 6.06 86.38 0.52 3.32 16 16 C 0.06 0.77 4.87 71.98 0.35 1.12 16 17 O -0.32 -6.21 10.08 -93.35 -0.94 -7.16 16 18 C 0.14 2.53 6.68 22.48 0.15 2.68 16 19 C -0.19 -2.40 9.03 22.37 0.20 -2.20 16 20 C -0.06 -0.76 10.05 22.34 0.22 -0.53 16 21 C -0.03 -0.47 7.15 22.59 0.16 -0.31 16 22 C 0.06 1.17 7.15 22.58 0.16 1.33 16 23 C -0.15 -3.18 10.00 22.44 0.22 -2.95 16 24 O -0.33 -6.40 11.40 -76.12 -0.87 -7.27 16 25 C 0.21 2.46 8.89 113.37 1.01 3.47 16 26 O -0.32 -5.59 11.41 -77.26 -0.88 -6.47 16 27 H -0.01 -0.41 7.40 -2.39 -0.02 -0.43 16 28 H 0.02 1.26 7.21 -2.39 -0.02 1.24 16 29 H 0.04 1.68 7.84 -2.39 -0.02 1.66 16 30 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.09 3.24 8.03 -2.39 -0.02 3.23 16 32 H 0.11 3.28 7.86 -2.39 -0.02 3.26 16 33 H 0.41 8.46 8.47 -92.71 -0.79 7.67 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 0.88 7.66 -2.39 -0.02 0.87 16 37 H 0.11 0.94 7.66 -2.39 -0.02 0.92 16 38 H 0.17 1.06 6.29 -2.91 -0.02 1.04 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -86.11 359.80 2.10 -84.01 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.27 Total: 8.73 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 6.62 Total: 24.18 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.08 Total: -114.47 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -2.74 Total: -51.97 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -86.11 2.10 -84.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.115 kcal (2) G-P(sol) polarization free energy of solvation -86.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds