Wall clock time and date at job start Fri Apr 10 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99798 * 2 1 4 4 C 1.52996 * 109.46785 * 275.00029 * 3 2 1 5 5 C 1.50704 * 109.47226 * 179.97438 * 4 3 2 6 6 O 1.20829 * 119.99840 * 0.02562 * 5 4 3 7 7 O 1.34228 * 120.00543 * 179.97438 * 5 4 3 8 8 S 1.65597 * 120.00320 * 179.97438 * 2 1 3 9 9 O 1.42100 * 106.40286 * 156.46123 * 8 2 1 10 10 O 1.42106 * 106.39786 * 23.53940 * 8 2 1 11 11 N 1.65595 * 107.22012 * 270.00210 * 8 2 1 12 12 C 1.47031 * 125.64931 * 90.02324 * 11 8 2 13 13 C 1.54327 * 107.26879 * 181.01326 * 12 11 8 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 O 1.42894 * 111.00574 * 82.60966 * 14 13 12 16 16 C 1.50699 * 111.00027 * 206.42184 * 14 13 12 17 17 H 1.08004 * 119.99932 * 118.54560 * 16 14 13 18 18 C 1.37878 * 120.00309 * 298.54574 * 16 14 13 19 19 N 1.31519 * 119.99749 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00293 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46961 * 90.00252 * 20 18 16 22 22 H 1.48500 * 109.46910 * 210.00081 * 20 18 16 23 23 H 1.48491 * 109.46792 * 330.00051 * 20 18 16 24 24 C 1.47422 * 125.64931 * 269.96901 * 11 8 2 25 25 H 1.09000 * 109.47139 * 270.00195 * 1 2 3 26 26 H 1.08997 * 109.47723 * 30.00198 * 1 2 3 27 27 H 1.09003 * 109.46854 * 150.00682 * 1 2 3 28 28 H 1.08999 * 109.47312 * 34.99471 * 3 2 1 29 29 H 1.08995 * 109.47352 * 155.00280 * 3 2 1 30 30 H 1.09004 * 109.47431 * 299.99613 * 4 3 2 31 31 H 1.08998 * 109.47696 * 60.00132 * 4 3 2 32 32 H 0.96693 * 117.00765 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.88059 * 61.59691 * 12 11 8 34 34 H 1.08994 * 109.87878 * 300.42970 * 12 11 8 35 35 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 36 36 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 37 37 H 0.96706 * 114.00313 * 61.45445 * 15 14 13 38 38 H 0.96999 * 120.00107 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.36378 * 37.08028 * 24 11 8 40 40 H 1.09001 * 110.46274 * 274.80204 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7732 -1.4370 5 6 3.0964 3.0787 -1.4371 6 8 3.4776 3.5563 -0.3947 7 8 3.3446 3.7104 -2.5951 8 16 2.2931 -1.4341 0.0006 9 8 3.5760 -1.1569 -0.5439 10 8 1.4114 -2.4067 -0.5434 11 7 2.5382 -1.8579 1.5825 12 6 1.6306 -2.6751 2.4012 13 6 2.2561 -2.7849 3.8078 14 6 3.1991 -1.5542 3.8658 15 8 2.4781 -0.3728 4.2211 16 6 4.3414 -1.7936 4.8191 17 1 5.3585 -1.7858 4.4559 18 6 4.0882 -2.0225 6.1550 19 7 2.8496 -2.0326 6.5971 20 14 5.5042 -2.3185 7.3368 21 1 5.9577 -1.0218 7.9006 22 1 5.0524 -3.2062 8.4382 23 1 6.6281 -2.9630 6.6111 24 6 3.7031 -1.4794 2.4029 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5137 28 1 1.6501 2.0043 0.5894 29 1 3.1857 1.1178 0.4342 30 1 2.8910 1.0377 -2.0265 31 1 1.3553 1.9242 -1.8714 32 1 3.8312 4.5445 -2.5448 33 1 1.5281 -3.6676 1.9626 34 1 0.6549 -2.1935 2.4660 35 1 1.4875 -2.7185 4.5778 36 1 2.8207 -3.7119 3.9075 37 1 2.0612 -0.4135 5.0927 38 1 2.6713 -2.1940 7.5368 39 1 4.0223 -0.4651 2.1632 40 1 4.5227 -2.1810 2.2477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598479801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:35 Heat of formation + Delta-G solvation = -211.266989 kcal Electronic energy + Delta-G solvation = -26834.071997 eV Core-core repulsion = 22775.886853 eV Total energy + Delta-G solvation = -4058.185144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39946 -38.05241 -37.10829 -36.83623 -36.10444 -35.61492 -34.25230 -32.21487 -31.49684 -29.21133 -28.29519 -26.79124 -24.86712 -24.05184 -21.50969 -21.18449 -19.83170 -18.82684 -18.24985 -17.75528 -17.32195 -16.91767 -16.77280 -16.15643 -15.76801 -14.96762 -14.74648 -14.42452 -14.25286 -14.11130 -13.77895 -13.33186 -13.18288 -12.98018 -12.62359 -12.38814 -12.37994 -12.05187 -11.91715 -11.85606 -11.77475 -11.68601 -11.54309 -11.33430 -11.12013 -11.02700 -10.80864 -10.75936 -10.51456 -10.44086 -10.01364 -9.44428 -9.17993 -8.69072 -8.39043 -8.20766 -6.28005 -4.35784 0.78098 2.05389 2.74861 3.15664 3.20747 3.28161 3.31862 3.74312 4.26311 4.47492 4.58905 4.68910 4.95458 4.99625 5.15160 5.31880 5.37976 5.45965 5.50764 5.75805 5.78361 5.85455 5.89938 5.97784 6.03020 6.18747 6.30668 6.33885 6.44544 6.65021 6.80084 6.94714 7.06287 7.34126 7.37948 7.71459 7.74066 8.04062 8.66758 9.30883 9.39289 10.79314 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.004148 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.331302 B = 6748.314979 C = 7687.699027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.009 6.009 3 C 0.139 3.861 4 C -0.137 4.137 5 C 0.484 3.516 6 O -0.510 6.510 7 O -0.520 6.520 8 S 2.797 3.203 9 O -0.977 6.977 10 O -0.981 6.981 11 N -1.010 6.010 12 C 0.123 3.877 13 C -0.132 4.132 14 C 0.251 3.749 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.137 3.863 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.410 0.590 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.380 0.620 38 H 0.267 0.733 39 H 0.064 0.936 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 6.029 -13.127 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.847 5.847 3 C 0.013 3.987 4 C -0.177 4.177 5 C 0.326 3.674 6 O -0.397 6.397 7 O -0.332 6.332 8 S 2.807 3.193 9 O -0.961 6.961 10 O -0.965 6.965 11 N -0.852 5.852 12 C -0.002 4.002 13 C -0.171 4.171 14 C 0.209 3.791 15 O -0.391 6.391 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C 0.013 3.987 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.269 0.731 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.230 0.770 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.158 5.481 -14.159 16.035 hybrid contribution 0.641 0.456 1.635 1.815 sum -4.517 5.937 -12.524 14.577 Atomic orbital electron populations 1.21576 0.78479 1.03549 1.02491 1.57965 1.15491 1.21759 1.89458 1.20950 0.98323 0.85864 0.93567 1.21874 1.01796 0.92245 1.01741 1.23295 0.77018 0.86215 0.80878 1.90778 1.49160 1.66543 1.33230 1.84527 1.71733 1.40410 1.36496 1.01458 0.72827 0.72542 0.72445 1.93587 1.40333 1.85238 1.76973 1.93562 1.67221 1.58546 1.77199 1.58799 1.31553 1.64773 1.30074 1.21809 0.92037 0.92936 0.93422 1.23153 1.00448 1.01224 0.92322 1.19610 0.88968 0.81882 0.88611 1.86106 1.72096 1.40572 1.40328 1.21487 0.93337 1.49583 0.93084 0.91723 1.24977 0.96039 0.93678 0.98227 1.69718 1.18428 1.49468 1.15811 0.86437 0.82154 0.78238 0.80251 1.20457 1.21127 1.19720 1.22125 0.86205 0.99126 0.91276 0.92264 0.91008 0.90069 0.89097 0.88826 0.86890 0.87218 0.73125 0.92689 0.92995 0.89737 0.91452 0.77029 0.92287 0.91766 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.68 59.85 0.64 1.55 16 2 N -1.01 -13.71 3.24 -121.76 -0.39 -14.10 16 3 C 0.14 1.81 4.62 -4.04 -0.02 1.79 16 4 C -0.14 -1.44 6.13 -27.88 -0.17 -1.61 16 5 C 0.48 5.47 8.33 36.01 0.30 5.77 16 6 O -0.51 -7.48 16.74 -18.75 -0.31 -7.79 16 7 O -0.52 -4.42 13.42 -39.25 -0.53 -4.95 16 8 S 2.80 47.52 6.31 -107.50 -0.68 46.85 16 9 O -0.98 -18.34 16.69 -57.17 -0.95 -19.29 16 10 O -0.98 -17.92 16.32 -57.17 -0.93 -18.86 16 11 N -1.01 -18.95 3.76 -111.42 -0.42 -19.37 16 12 C 0.12 2.28 6.99 -3.06 -0.02 2.26 16 13 C -0.13 -2.81 5.38 -24.90 -0.13 -2.95 16 14 C 0.25 5.84 0.87 -89.62 -0.08 5.76 16 15 O -0.58 -13.99 13.16 -35.23 -0.46 -14.46 16 16 C -0.54 -13.69 8.27 -34.44 -0.28 -13.97 16 17 H 0.06 1.65 7.79 -52.48 -0.41 1.24 16 18 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -22.63 10.76 55.43 0.60 -22.04 16 20 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.14 2.88 6.16 -2.53 -0.02 2.86 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.56 8.07 -51.93 -0.42 0.15 16 27 H 0.08 0.88 7.02 -51.93 -0.36 0.51 16 28 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.09 1.41 7.57 -51.93 -0.39 1.02 16 30 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 1.78 9.10 45.56 0.41 2.20 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.88 7.55 -51.93 -0.39 1.48 16 36 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 37 H 0.38 9.24 7.57 45.56 0.34 9.59 16 38 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -31.51 349.93 -7.86 -39.37 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.14 Total: 11.17 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 0.12 Total: 3.22 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.22 Total: -55.51 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: -3.19 Total: -65.34 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 47.52 SS G_CDS: -0.68 Total: 46.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.51 -7.86 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598479801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.900 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds