Wall clock time and date at job start Fri Apr 10 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99798 * 2 1 4 4 C 1.52996 * 109.46785 * 275.00029 * 3 2 1 5 5 C 1.50704 * 109.47226 * 179.97438 * 4 3 2 6 6 O 1.20829 * 119.99840 * 0.02562 * 5 4 3 7 7 O 1.34228 * 120.00543 * 179.97438 * 5 4 3 8 8 S 1.65597 * 120.00320 * 179.97438 * 2 1 3 9 9 O 1.42100 * 106.40286 * 156.46123 * 8 2 1 10 10 O 1.42106 * 106.39786 * 23.53940 * 8 2 1 11 11 N 1.65595 * 107.22012 * 270.00210 * 8 2 1 12 12 C 1.47031 * 125.64931 * 90.02324 * 11 8 2 13 13 C 1.54327 * 107.26879 * 181.01326 * 12 11 8 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 O 1.42894 * 111.00574 * 82.60966 * 14 13 12 16 16 C 1.50699 * 111.00027 * 206.42184 * 14 13 12 17 17 H 1.08004 * 119.99932 * 118.54560 * 16 14 13 18 18 C 1.37878 * 120.00309 * 298.54574 * 16 14 13 19 19 N 1.31519 * 119.99749 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00293 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46961 * 90.00252 * 20 18 16 22 22 H 1.48500 * 109.46910 * 210.00081 * 20 18 16 23 23 H 1.48491 * 109.46792 * 330.00051 * 20 18 16 24 24 C 1.47422 * 125.64931 * 269.96901 * 11 8 2 25 25 H 1.09000 * 109.47139 * 270.00195 * 1 2 3 26 26 H 1.08997 * 109.47723 * 30.00198 * 1 2 3 27 27 H 1.09003 * 109.46854 * 150.00682 * 1 2 3 28 28 H 1.08999 * 109.47312 * 34.99471 * 3 2 1 29 29 H 1.08995 * 109.47352 * 155.00280 * 3 2 1 30 30 H 1.09004 * 109.47431 * 299.99613 * 4 3 2 31 31 H 1.08998 * 109.47696 * 60.00132 * 4 3 2 32 32 H 0.96693 * 117.00765 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.88059 * 61.59691 * 12 11 8 34 34 H 1.08994 * 109.87878 * 300.42970 * 12 11 8 35 35 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 36 36 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 37 37 H 0.96706 * 114.00313 * 61.45445 * 15 14 13 38 38 H 0.96999 * 120.00107 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.36378 * 37.08028 * 24 11 8 40 40 H 1.09001 * 110.46274 * 274.80204 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7732 -1.4370 5 6 3.0964 3.0787 -1.4371 6 8 3.4776 3.5563 -0.3947 7 8 3.3446 3.7104 -2.5951 8 16 2.2931 -1.4341 0.0006 9 8 3.5760 -1.1569 -0.5439 10 8 1.4114 -2.4067 -0.5434 11 7 2.5382 -1.8579 1.5825 12 6 1.6306 -2.6751 2.4012 13 6 2.2561 -2.7849 3.8078 14 6 3.1991 -1.5542 3.8658 15 8 2.4781 -0.3728 4.2211 16 6 4.3414 -1.7936 4.8191 17 1 5.3585 -1.7858 4.4559 18 6 4.0882 -2.0225 6.1550 19 7 2.8496 -2.0326 6.5971 20 14 5.5042 -2.3185 7.3368 21 1 5.9577 -1.0218 7.9006 22 1 5.0524 -3.2062 8.4382 23 1 6.6281 -2.9630 6.6111 24 6 3.7031 -1.4794 2.4029 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5137 28 1 1.6501 2.0043 0.5894 29 1 3.1857 1.1178 0.4342 30 1 2.8910 1.0377 -2.0265 31 1 1.3553 1.9242 -1.8714 32 1 3.8312 4.5445 -2.5448 33 1 1.5281 -3.6676 1.9626 34 1 0.6549 -2.1935 2.4660 35 1 1.4875 -2.7185 4.5778 36 1 2.8207 -3.7119 3.9075 37 1 2.0612 -0.4135 5.0927 38 1 2.6713 -2.1940 7.5368 39 1 4.0223 -0.4651 2.1632 40 1 4.5227 -2.1810 2.2477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598479801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:34 Heat of formation + Delta-G solvation = -237.673097 kcal Electronic energy + Delta-G solvation = -26835.217052 eV Core-core repulsion = 22775.886853 eV Total energy + Delta-G solvation = -4059.330199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27367 -39.74325 -38.48561 -37.81971 -37.05579 -36.97180 -36.00701 -34.15390 -32.41610 -30.88924 -29.98938 -27.70242 -26.71504 -25.05855 -23.06937 -22.06987 -21.60814 -20.10700 -19.36097 -19.05110 -18.65950 -18.56033 -17.76124 -17.06818 -17.03300 -16.86188 -16.30736 -15.91424 -15.44264 -15.35289 -14.96112 -14.77289 -14.52640 -14.11361 -14.02030 -13.76365 -13.61352 -13.45796 -13.36276 -13.27804 -13.19248 -13.13590 -12.78977 -12.60709 -12.58503 -12.54846 -12.27840 -12.17365 -12.07862 -11.82127 -11.69224 -11.20721 -10.61700 -10.25357 -10.08481 -9.89283 -8.20177 -6.34187 -0.55311 1.19322 1.43407 1.46831 1.54864 1.70462 2.10681 2.41636 2.47652 3.04571 3.13705 3.62093 3.72068 3.75558 4.08425 4.14071 4.27729 4.33456 4.40639 4.53437 4.55841 4.63343 4.66372 4.71722 4.89838 4.92589 4.95556 5.03249 5.21552 5.25462 5.32892 5.51647 5.57425 5.61218 5.64498 5.82264 6.15259 6.69914 6.98605 7.36424 7.45507 8.85352 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.004148 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.331302 B = 6748.314979 C = 7687.699027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.001 6.001 3 C 0.136 3.864 4 C -0.134 4.134 5 C 0.492 3.508 6 O -0.551 6.551 7 O -0.511 6.511 8 S 2.810 3.190 9 O -0.998 6.998 10 O -0.991 6.991 11 N -1.016 6.016 12 C 0.126 3.874 13 C -0.124 4.124 14 C 0.237 3.763 15 O -0.586 6.586 16 C -0.562 4.562 17 H 0.056 0.944 18 C 0.038 3.962 19 N -0.906 5.906 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.280 1.280 23 H -0.273 1.273 24 C 0.142 3.858 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.429 0.571 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.376 0.624 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 6.538 -14.277 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.842 5.842 3 C 0.009 3.991 4 C -0.173 4.173 5 C 0.335 3.665 6 O -0.442 6.442 7 O -0.324 6.324 8 S 2.820 3.180 9 O -0.982 6.982 10 O -0.976 6.976 11 N -0.856 5.856 12 C 0.001 3.999 13 C -0.164 4.164 14 C 0.196 3.804 15 O -0.394 6.394 16 C -0.601 4.601 17 H 0.074 0.926 18 C -0.164 4.164 19 N -0.545 5.545 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.206 1.206 23 H -0.197 1.197 24 C 0.017 3.983 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.164 0.836 32 H 0.291 0.709 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.225 0.775 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.100 5.989 -15.337 17.558 hybrid contribution 0.911 0.372 1.930 2.166 sum -5.189 6.361 -13.407 15.720 Atomic orbital electron populations 1.21858 0.76337 1.05455 1.03178 1.57687 1.16732 1.20699 1.89054 1.20984 0.97054 0.85540 0.95482 1.21844 1.03729 0.91764 1.00000 1.23366 0.76177 0.86221 0.80750 1.90774 1.50947 1.67720 1.34736 1.84480 1.71598 1.41447 1.34913 1.00979 0.72387 0.72901 0.71693 1.93557 1.41836 1.85641 1.77163 1.93545 1.67274 1.59617 1.77117 1.58845 1.31014 1.65400 1.30307 1.21792 0.92364 0.94086 0.91706 1.22951 0.99649 0.99793 0.93964 1.19756 0.88937 0.82293 0.89413 1.86097 1.72107 1.41229 1.39967 1.21758 0.93729 1.50403 0.94196 0.92613 1.25564 0.98012 0.93468 0.99323 1.69783 1.19354 1.49310 1.16071 0.85598 0.79781 0.77935 0.78505 1.20542 1.20575 1.19740 1.21911 0.86951 0.98988 0.90466 0.92260 0.87379 0.89929 0.88180 0.91567 0.86990 0.83648 0.70923 0.91171 0.91258 0.90906 0.92521 0.77535 0.92132 0.92080 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 10.68 127.77 1.36 2.78 16 2 N -1.00 -25.37 3.24 -539.13 -1.75 -27.11 16 3 C 0.14 3.34 4.62 86.38 0.40 3.74 16 4 C -0.13 -2.52 6.13 29.85 0.18 -2.34 16 5 C 0.49 10.28 8.33 71.24 0.59 10.87 16 6 O -0.55 -15.84 16.74 21.95 0.37 -15.48 16 7 O -0.51 -7.48 13.42 -51.40 -0.69 -8.17 16 8 S 2.81 92.45 6.31 -56.49 -0.36 92.10 16 9 O -1.00 -37.01 16.69 -128.00 -2.14 -39.15 16 10 O -0.99 -34.56 16.32 -128.00 -2.09 -36.65 16 11 N -1.02 -37.54 3.76 -506.42 -1.90 -39.44 16 12 C 0.13 4.52 6.99 86.73 0.61 5.13 16 13 C -0.12 -5.30 5.38 31.78 0.17 -5.13 16 14 C 0.24 11.17 0.87 -10.15 -0.01 11.16 16 15 O -0.59 -28.42 13.16 -148.98 -1.96 -30.38 16 16 C -0.56 -29.12 8.27 25.60 0.21 -28.90 16 17 H 0.06 2.90 7.79 -2.91 -0.02 2.88 16 18 C 0.04 1.91 5.29 84.65 0.45 2.36 16 19 N -0.91 -45.92 10.76 21.45 0.23 -45.69 16 20 Si 0.96 41.04 29.54 68.60 2.03 43.07 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 C 0.14 6.03 6.16 86.86 0.54 6.57 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 27 H 0.08 1.55 7.02 -2.39 -0.02 1.54 16 28 H 0.10 2.28 8.07 -2.39 -0.02 2.26 16 29 H 0.07 2.01 7.57 -2.39 -0.02 1.99 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.43 2.78 9.10 -74.06 -0.67 2.10 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 3.25 7.55 -2.39 -0.02 3.23 16 36 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 37 H 0.38 18.53 7.57 -74.05 -0.56 17.97 16 38 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 39 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 3.01 8.03 -2.39 -0.02 2.99 16 Total: -1.00 -67.01 349.93 -3.91 -70.92 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.15 Total: 29.74 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 4.50 Total: 6.23 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -3.42 Total: -112.24 kcal Atomic # 8 Polarization: -123.31 SS G_CDS: -6.51 Total: -129.82 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 92.45 SS G_CDS: -0.36 Total: 92.10 kcal Total: -67.01 -3.91 -70.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598479801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.752 kcal (2) G-P(sol) polarization free energy of solvation -67.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds