Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.50720 * 2 1 4 4 C 1.53296 * 109.51556 * 239.89837 * 2 1 3 5 5 N 1.47149 * 108.38147 * 292.37402 * 4 2 1 6 6 S 1.65603 * 120.97838 * 129.43894 * 5 4 2 7 7 O 1.42092 * 106.40486 * 336.46521 * 6 5 4 8 8 O 1.42101 * 106.40391 * 203.54141 * 6 5 4 9 9 N 1.65604 * 107.21518 * 90.00694 * 6 5 4 10 10 C 1.46503 * 119.99536 * 270.00010 * 9 6 5 11 11 C 1.46491 * 120.00514 * 89.99631 * 9 6 5 12 12 C 1.50702 * 109.46957 * 94.99913 * 11 9 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 9 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.47149 * 118.04063 * 309.72017 * 5 4 2 21 21 C 1.52878 * 108.60642 * 50.22188 * 20 5 4 22 22 H 1.09002 * 109.40750 * 67.85371 * 21 20 5 23 23 C 1.50702 * 109.57963 * 187.92367 * 21 20 5 24 24 O 1.20827 * 119.99631 * 114.88364 * 23 21 20 25 25 O 1.34231 * 120.00381 * 294.88217 * 23 21 20 26 26 O 1.42955 * 109.30323 * 307.93685 * 21 20 5 27 27 H 1.08999 * 109.46816 * 180.10274 * 1 2 3 28 28 H 1.08992 * 109.47427 * 300.10305 * 1 2 3 29 29 H 1.09000 * 109.46774 * 60.10575 * 1 2 3 30 30 H 1.08997 * 109.68269 * 172.65394 * 4 2 1 31 31 H 1.08999 * 109.70951 * 52.11620 * 4 2 1 32 32 H 1.09007 * 109.47205 * 270.00151 * 10 9 6 33 33 H 1.08999 * 109.47284 * 29.99860 * 10 9 6 34 34 H 1.08996 * 109.47487 * 149.99938 * 10 9 6 35 35 H 1.09004 * 109.47166 * 335.00179 * 11 9 6 36 36 H 1.08994 * 109.47507 * 214.99885 * 11 9 6 37 37 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.68643 * 170.00875 * 20 5 4 39 39 H 1.09002 * 109.67961 * 290.56019 * 20 5 4 40 40 H 0.96703 * 116.99854 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0421 -0.7247 -1.2500 5 7 1.6961 -2.1502 -1.1344 6 16 0.9279 -2.9437 -2.3684 7 8 0.2543 -1.9490 -3.1272 8 8 0.2647 -4.0542 -1.7800 9 7 2.1019 -3.5692 -3.3548 10 6 2.6159 -2.7772 -4.4749 11 6 2.6265 -4.9144 -3.1072 12 6 1.8839 -5.9084 -3.9625 13 1 1.0999 -5.5718 -4.6246 14 6 2.2097 -7.2470 -3.9044 15 7 1.5653 -8.1137 -4.6548 16 14 3.5662 -7.8292 -2.7597 17 1 2.9852 -8.1680 -1.4358 18 1 4.2182 -9.0323 -3.3367 19 1 4.5735 -6.7503 -2.5968 20 6 2.0471 -2.8483 0.1125 21 6 1.5396 -2.0214 1.2939 22 1 0.4496 -2.0288 1.2996 23 6 2.0535 -2.6122 2.5816 24 8 2.8218 -1.9835 3.2704 25 8 1.6577 -3.8367 2.9634 26 8 2.0075 -0.6768 1.1653 27 1 -0.3633 -1.0277 0.0018 28 1 -0.3634 0.5154 0.8890 29 1 -0.3633 0.5122 -0.8909 30 1 3.1241 -0.6141 -1.3210 31 1 1.5710 -0.3033 -2.1381 32 1 2.0186 -2.9760 -5.3648 33 1 2.5575 -1.7173 -4.2275 34 1 3.6540 -3.0490 -4.6660 35 1 2.4931 -5.1686 -2.0557 36 1 3.6874 -4.9422 -3.3559 37 1 1.7942 -9.0554 -4.6136 38 1 1.5789 -3.8326 0.1266 39 1 3.1297 -2.9553 0.1810 40 1 2.0140 -4.1731 3.7971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599868049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = -187.244705 kcal Electronic energy + Delta-G solvation = -27379.235609 eV Core-core repulsion = 23322.092149 eV Total energy + Delta-G solvation = -4057.143460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87326 -39.41781 -36.92368 -36.35511 -35.73280 -35.39502 -34.96155 -32.93301 -32.44099 -29.60733 -28.47371 -26.51048 -25.25894 -24.80244 -22.48609 -21.97903 -20.22886 -18.98123 -18.39464 -17.76300 -17.12271 -17.06812 -16.72262 -16.69694 -16.28442 -15.59334 -14.97885 -14.87942 -14.66311 -14.62887 -14.21527 -13.72056 -13.38814 -13.13838 -12.72676 -12.61194 -12.49838 -12.45651 -12.22834 -11.98672 -11.85642 -11.84064 -11.63350 -11.46491 -11.42930 -11.35657 -11.08238 -10.74223 -10.56287 -10.46010 -10.43983 -10.27610 -9.61517 -9.04357 -8.64179 -8.20882 -6.12878 -4.12815 0.85870 1.90591 2.27759 3.11313 3.23631 3.27867 3.31103 3.74412 3.81776 4.31073 4.33539 4.46396 4.57829 4.63954 4.78018 4.88324 4.98414 5.06734 5.12165 5.15959 5.35669 5.39738 5.50639 5.56815 5.59373 5.84466 5.89783 5.92050 6.12495 6.21520 6.28561 6.36771 6.63033 6.69072 6.96754 7.26767 7.51572 7.64593 8.43393 8.91440 9.45587 11.00642 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.005362 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.123742 B = 5220.465251 C = 6504.820887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.081 3.919 3 H 0.123 0.877 4 C 0.086 3.914 5 N -1.013 6.013 6 S 2.779 3.221 7 O -0.983 6.983 8 O -0.953 6.953 9 N -0.990 5.990 10 C 0.107 3.893 11 C 0.227 3.773 12 C -0.533 4.533 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.893 5.893 16 Si 0.871 3.129 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.098 3.902 21 C 0.087 3.913 22 H 0.108 0.892 23 C 0.491 3.509 24 O -0.494 6.494 25 O -0.506 6.506 26 O -0.349 6.349 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.034 0.966 37 H 0.266 0.734 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 15.151 11.162 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.023 3.977 3 H 0.141 0.859 4 C -0.040 4.040 5 N -0.851 5.851 6 S 2.788 3.212 7 O -0.967 6.967 8 O -0.937 6.937 9 N -0.832 5.832 10 C -0.039 4.039 11 C 0.104 3.896 12 C -0.572 4.572 13 H 0.096 0.904 14 C -0.129 4.129 15 N -0.531 5.531 16 Si 0.697 3.303 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.028 4.028 21 C 0.026 3.974 22 H 0.125 0.875 23 C 0.331 3.669 24 O -0.380 6.380 25 O -0.319 6.319 26 O -0.268 6.268 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.541 15.276 10.922 18.842 hybrid contribution 1.195 -0.806 0.904 1.701 sum 2.735 14.471 11.826 18.887 Atomic orbital electron populations 1.22471 0.95548 1.03213 1.03657 1.22667 0.94385 0.96419 0.84278 0.85931 1.22176 1.01657 0.80471 0.99705 1.58697 1.77981 1.18854 1.29538 1.02209 0.73662 0.72696 0.72658 1.93543 1.71550 1.61388 1.70218 1.93640 1.71235 1.51384 1.77422 1.57464 1.59887 1.25293 1.40518 1.21258 1.00167 0.92776 0.89688 1.19476 0.95387 0.78073 0.96666 1.21345 1.20289 0.91111 1.24494 0.90433 1.24868 0.96200 0.96503 0.95315 1.69891 1.41151 1.02648 1.39455 0.86944 0.82596 0.78951 0.81785 1.19662 1.20870 1.18974 1.21813 1.02158 0.96542 0.82301 1.21536 1.00494 0.85173 0.90155 0.87493 1.22616 0.78276 0.79330 0.86709 1.90742 1.32345 1.60766 1.54111 1.84521 1.69260 1.32651 1.45419 1.88046 1.72101 1.22591 1.44069 0.92075 0.91253 0.90213 0.90280 0.87539 0.92575 0.92805 0.91346 0.95477 0.94806 0.92449 0.86256 0.89973 0.72348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 8.81 37.16 0.33 -1.50 16 2 C 0.08 0.79 3.93 -26.58 -0.10 0.68 16 3 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.09 0.91 6.09 -3.53 -0.02 0.89 16 5 N -1.01 -13.91 2.92 -113.30 -0.33 -14.24 16 6 S 2.78 50.98 6.07 -107.50 -0.65 50.32 16 7 O -0.98 -18.60 15.83 -57.17 -0.91 -19.51 16 8 O -0.95 -21.04 15.72 -57.17 -0.90 -21.94 16 9 N -0.99 -19.17 3.23 -123.06 -0.40 -19.57 16 10 C 0.11 1.71 10.33 59.85 0.62 2.33 16 11 C 0.23 5.16 4.19 -5.20 -0.02 5.14 16 12 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 16 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 20 C 0.10 1.28 5.96 -3.75 -0.02 1.26 16 21 C 0.09 1.04 2.90 -27.94 -0.08 0.96 16 22 H 0.11 1.17 6.25 -51.93 -0.32 0.84 16 23 C 0.49 5.88 7.66 36.01 0.28 6.16 16 24 O -0.49 -7.27 17.27 -25.46 -0.44 -7.71 16 25 O -0.51 -4.77 13.42 -39.26 -0.53 -5.29 16 26 O -0.35 -4.24 9.77 -55.11 -0.54 -4.78 16 27 H 0.06 0.67 6.11 -51.93 -0.32 0.35 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.07 6.94 -51.93 -0.36 0.71 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 34 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 35 H 0.03 0.61 7.04 -51.93 -0.37 0.24 16 36 H 0.03 0.73 7.01 -51.93 -0.36 0.37 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 38 H 0.12 1.66 6.94 -51.93 -0.36 1.30 16 39 H 0.08 0.99 8.13 -51.93 -0.42 0.56 16 40 H 0.42 1.98 9.10 45.56 0.41 2.39 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -36.87 342.01 -7.52 -44.40 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.62 Total: 0.89 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 0.53 Total: 2.70 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.05 Total: -60.11 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -3.31 Total: -59.23 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 50.98 SS G_CDS: -0.65 Total: 50.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.87 -7.52 -44.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599868049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.849 kcal (2) G-P(sol) polarization free energy of solvation -36.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds