Wall clock time and date at job start Fri Apr 10 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46782 * 2 1 4 4 C 1.46493 * 120.00065 * 84.99540 * 3 2 1 5 5 C 1.50706 * 109.47128 * 85.00121 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 S 1.65596 * 119.99652 * 264.99912 * 3 2 1 14 14 O 1.42099 * 106.40339 * 23.53868 * 13 3 2 15 15 O 1.42105 * 106.40306 * 156.45830 * 13 3 2 16 16 N 1.65598 * 107.21978 * 269.99930 * 13 3 2 17 17 C 1.47152 * 120.98203 * 89.99648 * 16 13 3 18 18 C 1.53298 * 108.37975 * 129.44481 * 17 16 13 19 19 O 1.42962 * 109.22231 * 52.30745 * 18 17 16 20 20 C 1.42956 * 114.16684 * 297.41366 * 19 18 17 21 21 H 1.08997 * 109.51688 * 302.66285 * 20 19 18 22 22 C 1.50697 * 109.51557 * 182.50379 * 20 19 18 23 23 O 1.20829 * 120.00154 * 355.00643 * 22 20 19 24 24 O 1.34233 * 120.00145 * 174.99781 * 22 20 19 25 25 C 1.47153 * 120.98381 * 269.72512 * 16 13 3 26 26 H 1.08996 * 109.47402 * 60.00415 * 1 2 3 27 27 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47571 * 300.00113 * 1 2 3 29 29 H 1.08996 * 109.47088 * 240.00102 * 2 1 3 30 30 H 1.09005 * 109.46896 * 119.99308 * 2 1 3 31 31 H 1.09001 * 109.47786 * 325.00394 * 4 3 2 32 32 H 1.08998 * 109.47558 * 205.00257 * 4 3 2 33 33 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.68255 * 249.16712 * 17 16 13 35 35 H 1.08999 * 109.68325 * 9.72895 * 17 16 13 36 36 H 1.09005 * 109.51140 * 172.22386 * 18 17 16 37 37 H 1.08994 * 109.51718 * 292.38124 * 18 17 16 38 38 H 0.96696 * 116.99855 * 180.02562 * 24 22 20 39 39 H 1.09009 * 109.67578 * 350.27653 * 25 16 13 40 40 H 1.08998 * 109.68543 * 110.82458 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 1.2638 5 6 3.4946 1.7890 1.8824 6 1 4.1719 1.1113 1.3840 7 6 3.8549 2.3656 3.0818 8 7 3.0323 3.1951 3.6859 9 14 5.5119 1.9698 3.8481 10 1 6.5965 2.3715 2.9168 11 1 5.6566 2.7128 5.1257 12 1 5.5998 0.5108 4.1107 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3055 3.5187 -1.1999 16 7 4.0143 1.8138 -1.7138 17 6 4.4349 0.6252 -2.4724 18 6 5.4004 1.0727 -3.5759 19 8 6.4448 1.8589 -2.9972 20 6 5.9945 3.0676 -2.3809 21 1 5.4572 3.6711 -3.1124 22 6 7.1800 3.8403 -1.8625 23 8 8.2875 3.3611 -1.9246 24 8 7.0056 5.0609 -1.3320 25 6 5.0592 2.7253 -1.2210 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.3616 1.8098 1.9453 32 1 2.0919 3.1804 1.0756 33 1 3.2859 3.6011 4.5296 34 1 4.9380 -0.0761 -1.8068 35 1 3.5631 0.1472 -2.9191 36 1 5.8305 0.1963 -4.0608 37 1 4.8610 1.6689 -4.3118 38 1 7.7959 5.5180 -1.0133 39 1 4.6004 3.6374 -0.8393 40 1 5.6261 2.2390 -0.4271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603736705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:50 Heat of formation + Delta-G solvation = -225.488172 kcal Electronic energy + Delta-G solvation = -27563.439893 eV Core-core repulsion = 23504.638072 eV Total energy + Delta-G solvation = -4058.801821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65845 -39.98036 -38.43416 -37.67642 -37.23782 -36.94059 -35.91297 -34.68948 -32.97727 -31.52972 -28.75202 -28.47853 -26.16634 -24.91797 -23.74286 -23.21802 -22.09215 -20.05277 -19.32443 -18.94498 -18.65374 -18.28334 -17.85716 -17.61102 -17.28083 -16.99945 -16.53548 -15.98269 -15.84418 -15.42666 -15.29882 -15.11929 -14.78964 -14.58935 -13.90765 -13.80449 -13.67220 -13.59176 -13.38889 -13.30022 -13.08440 -12.99975 -12.77933 -12.68706 -12.63813 -12.60412 -12.26014 -12.13631 -11.99939 -11.78311 -11.61395 -11.43826 -11.42395 -10.57555 -10.04705 -9.75479 -8.16908 -6.29921 -0.42495 0.97361 1.41898 1.42980 1.49795 1.50405 1.83045 2.39564 2.46476 2.95707 3.14850 3.26341 3.46971 3.65738 3.84501 3.98769 4.04983 4.13015 4.23602 4.34579 4.44120 4.48058 4.61116 4.66922 4.71260 4.87148 4.94781 4.99074 5.14128 5.27533 5.34565 5.42628 5.45071 5.56263 5.76457 5.86544 5.96436 6.10908 6.82118 6.87365 7.40197 8.90883 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.009688 B = 0.007539 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.600031 B = 3712.914364 C = 5630.821011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.995 5.995 4 C 0.261 3.739 5 C -0.538 4.538 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.925 5.925 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.268 1.268 13 S 2.796 3.204 14 O -0.990 6.990 15 O -1.008 7.008 16 N -1.003 6.003 17 C 0.073 3.927 18 C 0.051 3.949 19 O -0.370 6.370 20 C 0.092 3.908 21 H 0.122 0.878 22 C 0.498 3.502 23 O -0.526 6.526 24 O -0.501 6.501 25 C 0.108 3.892 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.147 0.853 37 H 0.073 0.927 38 H 0.436 0.564 39 H 0.102 0.898 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -4.501 -12.730 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.836 5.836 4 C 0.138 3.862 5 C -0.578 4.578 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.565 5.565 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.193 1.193 13 S 2.806 3.194 14 O -0.974 6.974 15 O -0.992 6.992 16 N -0.843 5.843 17 C -0.052 4.052 18 C -0.026 4.026 19 O -0.289 6.289 20 C 0.032 3.968 21 H 0.140 0.860 22 C 0.339 3.661 23 O -0.415 6.415 24 O -0.316 6.316 25 C -0.019 4.019 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.299 0.701 39 H 0.120 0.880 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.083 -4.277 -13.269 14.279 hybrid contribution 1.173 0.322 1.477 1.914 sum 4.256 -3.956 -11.792 13.146 Atomic orbital electron populations 1.22195 0.95827 1.03301 1.01360 1.21282 0.94687 0.81195 1.03358 1.57700 1.78887 1.24196 1.22829 1.18718 0.96418 0.90872 0.80238 1.21759 1.02557 1.27361 1.06089 0.91287 1.25689 1.00257 0.94759 0.97573 1.70041 1.37888 1.30731 1.17802 0.85740 0.80349 0.78586 0.77807 1.19547 1.21232 1.19348 1.01375 0.72812 0.72599 0.72627 1.93527 1.70425 1.76199 1.57270 1.93532 1.86238 1.33060 1.86375 1.58148 1.23616 1.34280 1.68240 1.22464 1.01334 0.86684 0.94728 1.23338 0.88673 0.96747 0.93816 1.87985 1.33825 1.32613 1.74502 1.21586 0.90302 0.88076 0.96881 0.86036 1.22665 0.89299 0.80192 0.73978 1.90716 1.27679 1.69670 1.53434 1.84486 1.45641 1.29463 1.72001 1.21661 0.89900 0.95176 0.95168 0.93256 0.88999 0.93533 0.89274 0.90325 0.96079 0.96263 0.92564 0.89543 0.86372 0.83573 0.90843 0.70121 0.87994 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.82 10.24 71.98 0.74 -4.09 16 2 C 0.12 3.78 6.06 86.38 0.52 4.30 16 3 N -1.00 -38.88 2.82 -519.83 -1.47 -40.35 16 4 C 0.26 12.72 5.43 85.64 0.47 13.19 16 5 C -0.54 -27.18 9.38 25.60 0.24 -26.94 16 6 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 7 C 0.02 0.90 5.46 84.65 0.46 1.37 16 8 N -0.93 -52.43 13.29 21.45 0.28 -52.15 16 9 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 S 2.80 103.49 6.12 -56.49 -0.35 103.15 16 14 O -0.99 -35.35 15.73 -128.00 -2.01 -37.36 16 15 O -1.01 -44.85 15.31 -128.00 -1.96 -46.81 16 16 N -1.00 -30.85 3.40 -512.35 -1.74 -32.59 16 17 C 0.07 1.63 6.71 86.35 0.58 2.21 16 18 C 0.05 0.98 6.98 72.08 0.50 1.48 16 19 O -0.37 -9.83 9.92 -129.98 -1.29 -11.12 16 20 C 0.09 2.52 3.29 29.81 0.10 2.62 16 21 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 22 C 0.50 14.05 7.66 71.24 0.55 14.59 16 23 O -0.53 -17.76 17.27 28.36 0.49 -17.27 16 24 O -0.50 -11.44 13.42 -51.44 -0.69 -12.13 16 25 C 0.11 3.48 5.96 86.22 0.51 4.00 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 2.30 7.61 -2.39 -0.02 2.28 16 30 H 0.08 2.50 8.11 -2.38 -0.02 2.48 16 31 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 32 H 0.02 1.06 6.91 -2.39 -0.02 1.04 16 33 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.12 2.30 6.95 -2.39 -0.02 2.29 16 36 H 0.15 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.44 5.70 9.10 -74.06 -0.67 5.03 16 39 H 0.10 3.66 6.94 -2.38 -0.02 3.64 16 40 H 0.07 2.58 8.13 -2.39 -0.02 2.56 16 Total: -1.00 -72.20 350.29 -1.65 -73.85 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.39 Total: 16.37 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 4.67 Total: 12.73 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -2.93 Total: -125.09 kcal Atomic # 8 Polarization: -119.23 SS G_CDS: -5.46 Total: -124.69 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 103.49 SS G_CDS: -0.35 Total: 103.15 kcal Total: -72.20 -1.65 -73.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603736705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.640 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds