Wall clock time and date at job start Fri Apr 10 2020 18:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00022 * 2 1 4 4 C 1.50702 * 109.46877 * 274.33733 * 3 2 1 5 5 H 1.08005 * 120.00147 * 5.02933 * 4 3 2 6 6 C 1.37883 * 120.00108 * 185.02045 * 4 3 2 7 7 N 1.31515 * 119.99462 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 120.00083 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47187 * 90.00192 * 8 6 4 10 10 H 1.48502 * 109.47207 * 210.00088 * 8 6 4 11 11 H 1.48507 * 109.47289 * 330.00086 * 8 6 4 12 12 S 1.65593 * 120.00177 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40135 * 336.65884 * 12 2 1 14 14 O 1.42094 * 106.40588 * 203.73708 * 12 2 1 15 15 N 1.65601 * 107.21795 * 90.19590 * 12 2 1 16 16 C 1.46502 * 120.00153 * 291.57935 * 15 12 2 17 17 C 1.52996 * 110.56322 * 303.61198 * 16 15 12 18 18 C 1.50698 * 109.47094 * 302.84142 * 17 16 15 19 19 O 1.20830 * 120.00058 * 4.99102 * 18 17 16 20 20 O 1.34239 * 120.00252 * 184.99838 * 18 17 16 21 21 C 1.54800 * 110.55155 * 66.42881 * 16 15 12 22 22 C 1.54483 * 104.08530 * 118.57279 * 21 16 15 23 23 O 1.44414 * 104.80750 * 336.03366 * 22 21 16 24 24 C 1.44420 * 105.27596 * 40.50858 * 23 22 21 25 25 H 1.08996 * 109.47194 * 270.00549 * 1 2 3 26 26 H 1.09007 * 109.47030 * 29.99945 * 1 2 3 27 27 H 1.08994 * 109.47327 * 149.99901 * 1 2 3 28 28 H 1.09001 * 109.47104 * 34.33680 * 3 2 1 29 29 H 1.08993 * 109.47303 * 154.33997 * 3 2 1 30 30 H 0.96998 * 119.99427 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00218 * 111.57828 * 15 12 2 32 32 H 1.08992 * 109.47556 * 62.84023 * 17 16 15 33 33 H 1.09005 * 109.47276 * 182.84505 * 17 16 15 34 34 H 0.96695 * 116.99982 * 180.02562 * 20 18 17 35 35 H 1.09002 * 110.49168 * 359.92877 * 21 16 15 36 36 H 1.08992 * 110.62726 * 237.28941 * 21 16 15 37 37 H 1.09005 * 110.37175 * 217.19489 * 22 21 16 38 38 H 1.09004 * 110.46345 * 94.91559 * 22 21 16 39 39 H 1.09004 * 110.37235 * 78.32349 * 24 23 22 40 40 H 1.08999 * 110.37678 * 200.54432 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3556 1.7575 -1.4168 5 1 1.8819 1.2245 -2.2280 6 6 3.1049 2.8852 -1.6775 7 7 3.6820 3.5340 -0.6898 8 14 3.3002 3.4914 -3.4335 9 1 2.2082 4.4460 -3.7520 10 1 4.6115 4.1730 -3.5789 11 1 3.2363 2.3371 -4.3657 12 16 2.2930 -1.4341 0.0006 13 8 1.4097 -2.4071 0.5412 14 8 3.5742 -1.1574 0.5492 15 7 2.5428 -1.8566 -1.5810 16 6 1.4091 -2.2472 -2.4227 17 6 0.6498 -3.4165 -1.7925 18 6 1.5936 -4.5717 -1.5791 19 8 2.7717 -4.4407 -1.8137 20 8 1.1257 -5.7464 -1.1284 21 6 0.4628 -1.0439 -2.6525 22 6 0.4883 -0.8325 -4.1826 23 8 1.7420 -1.4052 -4.6135 24 6 1.8915 -2.6174 -3.8427 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6443 2.0077 0.5797 29 1 3.1813 1.1203 0.4450 30 1 4.2094 4.3271 -0.8733 31 1 3.4397 -1.8454 -1.9501 32 1 0.2338 -3.1054 -0.8344 33 1 -0.1579 -3.7251 -2.4563 34 1 1.7692 -6.4577 -1.0067 35 1 0.8387 -0.1592 -2.1385 36 1 -0.5468 -1.2797 -2.3163 37 1 0.4556 0.2310 -4.4193 38 1 -0.3473 -1.3509 -4.6529 39 1 1.2711 -3.4109 -4.2594 40 1 2.9365 -2.9262 -3.8200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610115462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:15 Heat of formation + Delta-G solvation = -220.804531 kcal Electronic energy + Delta-G solvation = -28418.283521 eV Core-core repulsion = 24359.684797 eV Total energy + Delta-G solvation = -4058.598723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68712 -40.27072 -38.38122 -37.34430 -37.13568 -36.92073 -35.99258 -34.47708 -32.00580 -30.86206 -29.62316 -28.20793 -26.78119 -24.23960 -24.05916 -22.90334 -21.55238 -20.04916 -19.02171 -18.79719 -18.64370 -18.32814 -17.98419 -17.15170 -16.92866 -16.90443 -16.40367 -16.33283 -16.10031 -15.40481 -15.09927 -14.94674 -14.31185 -14.10479 -14.00822 -13.86520 -13.74801 -13.53379 -13.40623 -13.15255 -13.00509 -12.91803 -12.84074 -12.54385 -12.45669 -12.37011 -12.23570 -12.08052 -11.81914 -11.72570 -11.55263 -11.35471 -10.69574 -10.57838 -10.44695 -9.71474 -8.15418 -6.28158 -0.29525 1.31453 1.42034 1.46327 1.55846 1.96800 2.17095 2.43904 2.56581 3.01472 3.17624 3.35655 3.46896 3.61394 3.80220 4.05120 4.09135 4.25546 4.33590 4.45914 4.56466 4.70098 4.77435 4.77831 4.84330 4.91383 4.93604 5.11458 5.16698 5.24326 5.33576 5.51467 5.68610 5.80029 5.86708 5.90671 6.10825 6.13546 6.86362 7.06890 7.42744 8.92838 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.006410 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.405516 B = 4366.785691 C = 5259.730800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.000 6.000 3 C 0.258 3.742 4 C -0.537 4.537 5 H 0.085 0.915 6 C 0.010 3.990 7 N -0.931 5.931 8 Si 0.954 3.046 9 H -0.268 1.268 10 H -0.293 1.293 11 H -0.263 1.263 12 S 2.800 3.200 13 O -0.995 6.995 14 O -1.028 7.028 15 N -1.098 6.098 16 C 0.160 3.840 17 C -0.145 4.145 18 C 0.484 3.516 19 O -0.540 6.540 20 O -0.513 6.513 21 C -0.205 4.205 22 C 0.049 3.951 23 O -0.396 6.396 24 C 0.058 3.942 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.024 0.976 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.418 0.582 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.424 0.576 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.548 -15.019 -6.280 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.842 5.842 3 C 0.134 3.866 4 C -0.576 4.576 5 H 0.103 0.897 6 C -0.189 4.189 7 N -0.571 5.571 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.220 1.220 11 H -0.187 1.187 12 S 2.809 3.191 13 O -0.979 6.979 14 O -1.012 7.012 15 N -0.858 5.858 16 C 0.071 3.929 17 C -0.183 4.183 18 C 0.327 3.673 19 O -0.431 6.431 20 O -0.326 6.326 21 C -0.243 4.243 22 C -0.028 4.028 23 O -0.315 6.315 24 C -0.020 4.020 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.253 0.747 32 H 0.159 0.841 33 H 0.179 0.821 34 H 0.285 0.715 35 H 0.119 0.881 36 H 0.146 0.854 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.180 -14.930 -5.643 20.077 hybrid contribution 1.490 0.515 -0.606 1.689 sum -10.690 -14.415 -6.250 19.003 Atomic orbital electron populations 1.21823 0.77660 1.04076 1.02365 1.57506 1.15786 1.21690 1.89207 1.18771 0.90772 0.80216 0.96828 1.21985 1.31169 1.10597 0.93864 0.89670 1.25793 0.95179 0.97148 1.00821 1.70075 1.34137 1.19499 1.33375 0.85611 0.77291 0.78757 0.80426 1.19352 1.21967 1.18690 1.01122 0.71909 0.72709 0.73372 1.93461 1.66689 1.59418 1.78313 1.93521 1.43776 1.85850 1.78085 1.55656 1.15863 1.83479 1.30774 1.21434 0.85805 0.93384 0.92315 1.22457 0.98522 0.89692 1.07635 1.23503 0.88220 0.83763 0.71787 1.90715 1.19609 1.83470 1.49259 1.84483 1.46995 1.22995 1.78141 1.24373 1.01674 0.98982 0.99315 1.23539 0.86816 1.00040 0.92383 1.89171 1.41068 1.38611 1.62618 1.23708 1.03162 0.88132 0.87024 0.92615 0.90024 0.89253 0.95772 0.97012 0.92774 0.74738 0.84123 0.82079 0.71485 0.88105 0.85409 0.89682 0.88496 0.88380 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.42 8.37 127.77 1.07 3.49 16 2 N -1.00 -38.71 2.11 -543.23 -1.14 -39.86 16 3 C 0.26 12.80 5.41 85.63 0.46 13.26 16 4 C -0.54 -27.34 9.24 25.60 0.24 -27.10 16 5 H 0.09 3.98 5.54 -2.91 -0.02 3.97 16 6 C 0.01 0.53 5.46 84.66 0.46 0.99 16 7 N -0.93 -54.53 13.29 21.45 0.28 -54.25 16 8 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 S 2.80 109.63 5.95 -56.49 -0.34 109.29 16 13 O -1.00 -35.76 13.35 -128.00 -1.71 -37.47 16 14 O -1.03 -51.39 16.70 -128.00 -2.14 -53.53 16 15 N -1.10 -36.75 4.09 -147.82 -0.60 -37.36 16 16 C 0.16 4.00 0.65 4.72 0.00 4.00 16 17 C -0.14 -2.88 4.04 29.85 0.12 -2.76 16 18 C 0.48 11.48 7.54 71.24 0.54 12.02 16 19 O -0.54 -16.04 14.75 21.95 0.32 -15.72 16 20 O -0.51 -9.31 13.42 -51.50 -0.69 -10.01 16 21 C -0.21 -4.67 4.37 31.71 0.14 -4.53 16 22 C 0.05 1.07 7.63 72.49 0.55 1.63 16 23 O -0.40 -11.31 11.65 -148.98 -1.74 -13.05 16 24 C 0.06 1.38 5.86 72.48 0.42 1.80 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 2.23 8.07 -2.38 -0.02 2.21 16 27 H 0.09 1.90 4.92 -2.39 -0.01 1.89 16 28 H 0.02 1.24 8.10 -2.39 -0.02 1.22 16 29 H 0.01 0.68 6.93 -2.39 -0.02 0.67 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.42 14.72 8.44 -96.74 -0.82 13.90 16 32 H 0.14 3.07 5.22 -2.39 -0.01 3.05 16 33 H 0.16 1.64 8.08 -2.38 -0.02 1.63 16 34 H 0.42 4.38 9.10 -74.06 -0.67 3.71 16 35 H 0.10 3.02 2.59 -2.39 -0.01 3.02 16 36 H 0.13 1.81 6.62 -2.39 -0.02 1.79 16 37 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.10 1.65 7.82 -2.38 -0.02 1.64 16 40 H 0.09 2.42 7.35 -2.39 -0.02 2.41 16 Total: -1.00 -76.58 326.24 -2.09 -78.66 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.37 Total: 25.79 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.01 Total: 2.79 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -1.46 Total: -131.46 kcal Atomic # 8 Polarization: -123.82 SS G_CDS: -5.95 Total: -129.77 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 109.63 SS G_CDS: -0.34 Total: 109.29 kcal Total: -76.58 -2.09 -78.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.142 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds