Wall clock time and date at job start Fri Apr 10 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00173 * 2 1 4 4 C 1.50706 * 109.46949 * 84.99849 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 S 1.65597 * 119.99794 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40474 * 23.54220 * 12 2 1 14 14 O 1.42097 * 106.40414 * 156.46271 * 12 2 1 15 15 N 1.65604 * 107.22116 * 269.99997 * 12 2 1 16 16 C 1.46921 * 120.63411 * 269.72302 * 15 12 2 17 17 C 1.52758 * 109.00994 * 233.58401 * 16 15 12 18 18 C 1.53046 * 109.38029 * 305.58496 * 17 16 15 19 19 O 1.42896 * 109.44861 * 301.22532 * 18 17 16 20 20 C 1.50699 * 109.45930 * 181.25842 * 18 17 16 21 21 O 1.20820 * 120.00229 * 264.93459 * 20 18 17 22 22 O 1.34232 * 119.99752 * 84.93329 * 20 18 17 23 23 C 1.53044 * 109.53697 * 61.24197 * 18 17 16 24 24 C 1.46927 * 120.62911 * 89.99859 * 15 12 2 25 25 H 1.08997 * 109.46693 * 89.99733 * 1 2 3 26 26 H 1.08995 * 109.46999 * 210.00287 * 1 2 3 27 27 H 1.09004 * 109.46987 * 330.00144 * 1 2 3 28 28 H 1.09000 * 109.47175 * 324.99875 * 3 2 1 29 29 H 1.09001 * 109.47297 * 204.99383 * 3 2 1 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.58321 * 353.41663 * 16 15 12 32 32 H 1.08996 * 109.58925 * 113.83998 * 16 15 12 33 33 H 1.08996 * 109.56820 * 185.55438 * 17 16 15 34 34 H 1.08994 * 109.36433 * 65.49329 * 17 16 15 35 35 H 0.96693 * 114.00409 * 300.06324 * 19 18 17 36 36 H 0.96697 * 117.00291 * 179.97438 * 22 20 18 37 37 H 1.09002 * 109.49545 * 178.68336 * 23 18 17 38 38 H 1.08997 * 109.49690 * 58.58374 * 23 18 17 39 39 H 1.09003 * 109.58890 * 246.15997 * 24 15 12 40 40 H 1.09004 * 109.58654 * 6.43901 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 1.4155 5 1 1.9247 1.1960 2.2328 6 6 3.0007 2.9503 1.6664 7 7 3.5035 3.6468 0.6706 8 14 3.1797 3.5659 3.4209 9 1 3.9252 2.5635 4.2237 10 1 3.9222 4.8521 3.4209 11 1 1.8335 3.7722 4.0130 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4068 -0.5434 14 8 3.5759 -1.1571 -0.5438 15 7 2.5381 -1.8580 1.5826 16 6 3.7466 -1.4227 2.2957 17 6 4.4359 -2.6451 2.8990 18 6 3.4371 -3.4150 3.7661 19 8 2.9433 -2.5583 4.7977 20 6 4.1235 -4.6043 4.3870 21 8 4.0547 -5.6871 3.8554 22 8 4.8114 -4.4607 5.5306 23 6 2.2704 -3.8948 2.8996 24 6 1.5540 -2.6817 2.2980 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6502 2.0043 -0.5895 29 1 3.1859 1.1177 -0.4342 30 1 3.9670 4.4804 0.8472 31 1 4.4244 -0.9296 1.5988 32 1 3.4718 -0.7314 3.0923 33 1 5.2779 -2.3240 3.5121 34 1 4.7944 -3.2904 2.0971 35 1 3.6294 -2.2159 5.3867 36 1 5.2344 -5.2521 5.8910 37 1 1.5712 -4.4630 3.5131 38 1 2.6493 -4.5282 2.0976 39 1 1.0966 -2.0952 3.0948 40 1 0.7839 -3.0170 1.6032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610115838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:17 Heat of formation + Delta-G solvation = -238.728729 kcal Electronic energy + Delta-G solvation = -27496.289386 eV Core-core repulsion = 23436.913412 eV Total energy + Delta-G solvation = -4059.375975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87684 -39.61405 -38.38214 -37.31578 -37.17897 -36.90519 -36.60787 -34.43606 -32.42431 -32.27466 -29.62002 -26.97012 -26.69980 -24.63595 -24.14649 -23.24594 -21.39412 -19.90821 -19.29126 -18.97512 -18.65588 -18.49339 -18.13925 -17.33750 -16.92240 -16.54613 -16.26325 -15.73891 -15.68703 -15.48432 -15.04872 -14.90689 -14.80404 -14.15315 -13.99189 -13.93191 -13.63870 -13.47326 -13.38826 -13.08715 -13.07519 -12.97501 -12.87276 -12.65245 -12.59722 -12.46447 -12.35559 -12.24877 -12.12371 -11.81609 -11.70252 -11.58729 -11.01425 -10.53066 -10.02447 -9.72278 -8.11822 -6.25999 -0.32853 0.98934 1.49036 1.50522 1.58181 1.83337 1.99000 2.47100 2.55294 3.12326 3.19836 3.32680 3.44739 3.49815 3.92680 4.00069 4.07437 4.14738 4.32473 4.51716 4.52746 4.68867 4.72584 4.73472 4.78687 4.84480 5.03700 5.07919 5.15971 5.19319 5.30516 5.48599 5.48861 5.62375 5.79795 5.97728 6.14547 6.59147 6.86367 6.88876 7.44500 8.96195 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.005668 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.498833 B = 4938.973435 C = 6343.308341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.004 6.004 3 C 0.258 3.742 4 C -0.537 4.537 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.931 5.931 8 Si 0.960 3.040 9 H -0.257 1.257 10 H -0.292 1.292 11 H -0.271 1.271 12 S 2.796 3.204 13 O -1.003 7.003 14 O -1.012 7.012 15 N -1.000 6.000 16 C 0.132 3.868 17 C -0.152 4.152 18 C 0.162 3.838 19 O -0.537 6.537 20 C 0.468 3.532 21 O -0.538 6.538 22 O -0.503 6.503 23 C -0.109 4.109 24 C 0.124 3.876 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.017 0.983 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.401 0.599 36 H 0.430 0.570 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 -13.452 11.099 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.845 5.845 3 C 0.134 3.866 4 C -0.576 4.576 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.571 5.571 8 Si 0.784 3.216 9 H -0.181 1.181 10 H -0.218 1.218 11 H -0.196 1.196 12 S 2.806 3.194 13 O -0.987 6.987 14 O -0.997 6.997 15 N -0.841 5.841 16 C 0.007 3.993 17 C -0.192 4.192 18 C 0.118 3.882 19 O -0.346 6.346 20 C 0.310 3.690 21 O -0.428 6.428 22 O -0.317 6.317 23 C -0.148 4.148 24 C 0.000 4.000 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.292 0.708 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.215 -13.835 9.690 16.935 hybrid contribution 1.025 0.486 1.168 1.628 sum -0.190 -13.349 10.858 17.208 Atomic orbital electron populations 1.21455 0.78079 1.03418 1.01794 1.57593 1.15645 1.22173 1.89069 1.18784 0.90761 0.80060 0.97003 1.21770 1.35705 1.06817 0.93317 0.90760 1.25825 0.94981 0.96797 1.01221 1.70072 1.37960 1.15698 1.33353 0.85585 0.78484 0.77606 0.79893 1.18096 1.21827 1.19577 1.01246 0.72232 0.72331 0.73561 1.93511 1.67365 1.60159 1.77634 1.93513 1.42609 1.85736 1.77801 1.57951 1.30049 1.65007 1.31062 1.21177 0.84958 0.95764 0.97397 1.22518 0.98400 0.97822 1.00447 1.20889 0.94014 0.85264 0.87984 1.86601 1.39022 1.65295 1.43702 1.24488 0.75445 0.90533 0.78509 1.90726 1.59786 1.29503 1.62764 1.84458 1.63012 1.46179 1.38050 1.21821 0.96303 0.97971 0.98753 1.21480 0.90193 0.90892 0.97477 0.92751 0.90301 0.90733 0.96494 0.96359 0.92668 0.90289 0.89742 0.86781 0.90337 0.74758 0.70785 0.88122 0.89708 0.89257 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.23 10.31 127.77 1.32 4.54 16 2 N -1.00 -41.06 3.23 -543.21 -1.75 -42.81 16 3 C 0.26 12.87 5.41 85.63 0.46 13.33 16 4 C -0.54 -27.05 9.38 25.60 0.24 -26.81 16 5 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 6 C 0.01 0.58 5.46 84.66 0.46 1.04 16 7 N -0.93 -52.93 13.29 21.45 0.28 -52.65 16 8 Si 0.96 40.28 29.54 68.60 2.03 42.31 16 9 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 S 2.80 109.91 6.11 -56.49 -0.34 109.57 16 13 O -1.00 -39.58 15.80 -128.00 -2.02 -41.60 16 14 O -1.01 -47.17 15.27 -128.00 -1.95 -49.12 16 15 N -1.00 -31.74 3.35 -513.86 -1.72 -33.46 16 16 C 0.13 3.97 6.21 86.22 0.54 4.51 16 17 C -0.15 -3.44 5.05 30.53 0.15 -3.28 16 18 C 0.16 3.37 0.94 -11.51 -0.01 3.36 16 19 O -0.54 -10.19 11.63 -135.70 -1.58 -11.77 16 20 C 0.47 9.29 7.20 71.24 0.51 9.81 16 21 O -0.54 -13.97 16.88 21.98 0.37 -13.60 16 22 O -0.50 -6.39 12.86 -46.49 -0.60 -6.98 16 23 C -0.11 -2.49 4.62 30.67 0.14 -2.35 16 24 C 0.12 3.16 6.24 86.36 0.54 3.70 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 27 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 28 H 0.02 0.90 8.11 -2.39 -0.02 0.88 16 29 H 0.02 1.03 6.92 -2.39 -0.02 1.01 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 31 H 0.08 2.78 6.91 -2.38 -0.02 2.76 16 32 H 0.08 2.49 7.81 -2.39 -0.02 2.48 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.40 5.03 8.63 -74.06 -0.64 4.39 16 36 H 0.43 1.98 9.10 -74.06 -0.67 1.31 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.08 7.92 -2.39 -0.02 2.06 16 39 H 0.09 2.12 7.81 -2.39 -0.02 2.10 16 40 H 0.10 2.40 6.92 -2.38 -0.02 2.39 16 Total: -1.00 -72.07 344.76 -3.16 -75.23 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.23 Total: 17.04 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 4.36 Total: 7.85 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -3.19 Total: -128.92 kcal Atomic # 8 Polarization: -117.30 SS G_CDS: -5.78 Total: -123.08 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: 109.91 SS G_CDS: -0.34 Total: 109.57 kcal Total: -72.07 -3.16 -75.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.501 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds