Wall clock time and date at job start Fri Apr 10 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48499 * 109.47169 * 270.00016 * 3 2 1 5 5 H 1.48504 * 109.46866 * 30.00016 * 3 2 1 6 6 H 1.48500 * 109.47059 * 149.99973 * 3 2 1 7 7 C 1.38951 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99939 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00388 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00196 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00064 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.46975 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99821 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00123 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00061 * 180.02562 * 14 13 12 17 17 C 1.39393 * 120.00129 * 185.11161 * 16 14 13 18 18 C 1.39047 * 119.69411 * 174.86602 * 17 16 14 19 19 C 1.38356 * 119.09575 * 180.24901 * 18 17 16 20 20 C 1.38839 * 118.49705 * 359.47969 * 19 18 17 21 21 C 1.38065 * 119.31429 * 0.27470 * 20 19 18 22 22 C 1.50696 * 119.57698 * 179.97438 * 21 20 19 23 23 C 1.50689 * 109.47171 * 125.00031 * 22 21 20 24 24 O 1.20828 * 120.00162 * 0.02562 * 23 22 21 25 25 O 1.34240 * 120.00248 * 179.97438 * 23 22 21 26 26 N 1.31943 * 120.84560 * 359.97438 * 21 20 19 27 27 H 0.96996 * 120.00423 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99964 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46918 * 60.00070 * 12 10 9 30 30 H 1.08998 * 109.47384 * 299.99811 * 12 10 9 31 31 H 0.97000 * 119.99816 * 0.02562 * 13 12 10 32 32 H 0.97000 * 120.00055 * 5.10291 * 16 14 13 33 33 H 1.08000 * 120.45442 * 0.02910 * 18 17 16 34 34 H 1.08003 * 120.75045 * 179.75122 * 19 18 17 35 35 H 1.08001 * 120.34056 * 180.29583 * 20 19 18 36 36 H 1.09005 * 109.47186 * 245.00310 * 22 21 20 37 37 H 1.09007 * 109.47087 * 4.99613 * 22 21 20 38 38 H 0.96698 * 117.00293 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1958 -5.9765 0.0027 14 6 1.7466 -7.2471 0.0038 15 8 0.5512 -7.4693 0.0039 16 7 2.6224 -8.2715 0.0047 17 6 2.1614 -9.5827 -0.1017 18 6 3.0734 -10.6270 -0.2079 19 6 2.6021 -11.9231 -0.3181 20 6 1.2296 -12.1322 -0.3073 21 6 0.3817 -11.0485 -0.1936 22 6 -1.1091 -11.2685 -0.1818 23 6 -1.6996 -10.6415 1.0547 24 8 -0.9834 -10.0738 1.8451 25 8 -3.0214 -10.7128 1.2776 26 7 0.8599 -9.8227 -0.0950 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6175 -4.9213 -0.8881 30 1 0.6168 -4.9202 0.8919 31 1 3.1495 -5.7992 0.0030 32 1 3.5735 -8.0964 0.0794 33 1 4.1350 -10.4287 -0.2080 34 1 3.2866 -12.7540 -0.4061 35 1 0.8294 -13.1321 -0.3867 36 1 -1.5508 -10.8115 -1.0673 37 1 -1.3185 -12.3383 -0.1822 38 1 -3.3537 -10.2961 2.0845 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:21 Heat of formation + Delta-G solvation = -100.668415 kcal Electronic energy + Delta-G solvation = -25887.886796 eV Core-core repulsion = 21731.346366 eV Total energy + Delta-G solvation = -4156.540431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03638 -40.12757 -39.29605 -38.15719 -36.15291 -35.14229 -34.38131 -33.64853 -33.05692 -31.60193 -31.33190 -28.74914 -27.38742 -24.66801 -23.75980 -23.14737 -21.34659 -20.72629 -19.60494 -18.50602 -18.15742 -18.03046 -17.54948 -16.75418 -16.36431 -16.16292 -15.64433 -15.62983 -15.31228 -15.01082 -14.54088 -14.42342 -14.10494 -13.94629 -13.69722 -13.45861 -13.18129 -12.95187 -12.72584 -12.24696 -12.18183 -11.98481 -11.62678 -11.48245 -11.12834 -10.78065 -10.53740 -10.45642 -10.32391 -10.23395 -9.87982 -9.63141 -9.09501 -8.78931 -8.62490 -8.28111 -8.09485 -6.50747 -3.92816 0.89366 1.21371 2.25095 2.50768 2.90353 3.12076 3.22400 3.27780 3.34555 3.74864 3.80912 3.90484 4.09940 4.31608 4.48065 4.77633 4.87995 4.89843 4.94904 5.09733 5.15670 5.17992 5.22119 5.51228 5.69758 5.92378 5.96343 6.01146 6.07465 6.13383 6.48089 6.62619 6.72614 6.85633 7.46553 7.83750 7.89196 7.92863 8.24776 8.45695 8.78466 9.05143 9.40058 9.87849 10.66208 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002423 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.612323 B =11554.423143 C =12763.119659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.130 3.870 13 N -0.721 5.721 14 C 0.692 3.308 15 O -0.529 6.529 16 N -0.670 5.670 17 C 0.392 3.608 18 C -0.211 4.211 19 C -0.046 4.046 20 C -0.204 4.204 21 C 0.161 3.839 22 C -0.057 4.057 23 C 0.479 3.521 24 O -0.485 6.485 25 O -0.524 6.524 26 N -0.448 5.448 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.406 0.594 32 H 0.414 0.586 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 -25.696 -1.049 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.001 3.999 13 N -0.380 5.380 14 C 0.391 3.609 15 O -0.400 6.400 16 N -0.318 5.318 17 C 0.159 3.841 18 C -0.235 4.235 19 C -0.072 4.072 20 C -0.225 4.225 21 C 0.021 3.979 22 C -0.096 4.096 23 C 0.319 3.681 24 O -0.369 6.369 25 O -0.337 6.337 26 N -0.162 5.162 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.243 0.757 32 H 0.251 0.749 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -0.973 -24.846 -1.104 24.889 hybrid contribution 1.121 0.747 0.511 1.441 sum 0.148 -24.099 -0.593 24.107 Atomic orbital electron populations 1.69611 1.06019 1.28534 1.49296 1.25327 0.95665 0.99935 0.96804 0.85811 0.79223 0.80501 0.78477 1.20265 1.20792 1.19326 1.19725 0.93448 0.81990 1.48271 0.87685 1.41784 1.09513 1.04437 1.62617 1.19734 0.88273 0.84981 0.85528 1.90485 1.13744 1.86862 1.57424 1.20801 0.91125 0.84662 1.03273 1.44797 1.11348 1.03100 1.78763 1.15927 0.85431 0.80389 0.79112 1.91045 1.12805 1.82955 1.53237 1.42726 1.10575 1.03090 1.75418 1.18081 0.89132 0.84035 0.92843 1.21452 1.00238 0.92633 1.09185 1.21243 0.95275 0.96220 0.94429 1.21719 0.94030 0.99624 1.07154 1.20324 0.94453 0.88186 0.94892 1.20120 0.90429 1.02910 0.96092 1.22923 0.79944 0.77698 0.87584 1.90808 1.61114 1.38667 1.46343 1.84472 1.25756 1.74767 1.48700 1.67379 1.12960 1.22464 1.13404 0.91576 0.76993 0.89903 0.89892 0.75660 0.74949 0.84552 0.84362 0.84734 0.85781 0.86187 0.73059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 13.05 55.50 0.72 -23.38 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 8 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 10 C 0.43 9.98 7.85 -10.98 -0.09 9.89 16 11 O -0.60 -15.37 15.24 5.55 0.08 -15.28 16 12 C 0.13 2.48 6.15 -5.19 -0.03 2.45 16 13 N -0.72 -12.50 5.53 -66.41 -0.37 -12.87 16 14 C 0.69 12.11 8.52 -86.92 -0.74 11.37 16 15 O -0.53 -11.17 14.61 5.29 0.08 -11.09 16 16 N -0.67 -9.05 5.39 -15.81 -0.09 -9.13 16 17 C 0.39 5.35 7.42 -154.72 -1.15 4.21 16 18 C -0.21 -2.02 9.94 -39.24 -0.39 -2.41 16 19 C -0.05 -0.36 10.17 -39.32 -0.40 -0.76 16 20 C -0.20 -1.73 9.70 -39.42 -0.38 -2.11 16 21 C 0.16 1.89 5.76 -82.61 -0.48 1.42 16 22 C -0.06 -0.52 6.21 -29.04 -0.18 -0.70 16 23 C 0.48 5.78 8.26 36.00 0.30 6.07 16 24 O -0.48 -8.15 16.09 -18.75 -0.30 -8.45 16 25 O -0.52 -4.80 13.42 -39.28 -0.53 -5.33 16 26 N -0.45 -6.98 6.75 -8.60 -0.06 -7.03 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.40 9.60 7.90 -40.82 -0.32 9.28 16 29 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.41 6.66 7.46 -40.82 -0.30 6.35 16 32 H 0.41 3.99 8.72 -40.82 -0.36 3.64 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.13 0.68 7.94 -52.49 -0.42 0.26 16 36 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.12 0.58 7.86 -51.92 -0.41 0.17 16 38 H 0.41 2.37 9.10 45.56 0.41 2.79 16 LS Contribution 346.41 15.07 5.22 5.22 Total: -1.00 -38.57 346.41 -7.11 -45.68 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -3.02 Total: 18.34 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: -3.78 Total: 21.52 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: 0.16 Total: -66.25 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.67 Total: -40.16 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.57 -7.11 -45.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.983 kcal (2) G-P(sol) polarization free energy of solvation -38.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds