Wall clock time and date at job start Fri Apr 10 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48499 * 109.47169 * 270.00016 * 3 2 1 5 5 H 1.48504 * 109.46866 * 30.00016 * 3 2 1 6 6 H 1.48500 * 109.47059 * 149.99973 * 3 2 1 7 7 C 1.38951 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99939 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00388 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00196 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00064 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.46975 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99821 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00123 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00061 * 180.02562 * 14 13 12 17 17 C 1.39393 * 120.00129 * 185.11161 * 16 14 13 18 18 C 1.39047 * 119.69411 * 174.86602 * 17 16 14 19 19 C 1.38356 * 119.09575 * 180.24901 * 18 17 16 20 20 C 1.38839 * 118.49705 * 359.47969 * 19 18 17 21 21 C 1.38065 * 119.31429 * 0.27470 * 20 19 18 22 22 C 1.50696 * 119.57698 * 179.97438 * 21 20 19 23 23 C 1.50689 * 109.47171 * 125.00031 * 22 21 20 24 24 O 1.20828 * 120.00162 * 0.02562 * 23 22 21 25 25 O 1.34240 * 120.00248 * 179.97438 * 23 22 21 26 26 N 1.31943 * 120.84560 * 359.97438 * 21 20 19 27 27 H 0.96996 * 120.00423 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99964 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46918 * 60.00070 * 12 10 9 30 30 H 1.08998 * 109.47384 * 299.99811 * 12 10 9 31 31 H 0.97000 * 119.99816 * 0.02562 * 13 12 10 32 32 H 0.97000 * 120.00055 * 5.10291 * 16 14 13 33 33 H 1.08000 * 120.45442 * 0.02910 * 18 17 16 34 34 H 1.08003 * 120.75045 * 179.75122 * 19 18 17 35 35 H 1.08001 * 120.34056 * 180.29583 * 20 19 18 36 36 H 1.09005 * 109.47186 * 245.00310 * 22 21 20 37 37 H 1.09007 * 109.47087 * 4.99613 * 22 21 20 38 38 H 0.96698 * 117.00293 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1958 -5.9765 0.0027 14 6 1.7466 -7.2471 0.0038 15 8 0.5512 -7.4693 0.0039 16 7 2.6224 -8.2715 0.0047 17 6 2.1614 -9.5827 -0.1017 18 6 3.0734 -10.6270 -0.2079 19 6 2.6021 -11.9231 -0.3181 20 6 1.2296 -12.1322 -0.3073 21 6 0.3817 -11.0485 -0.1936 22 6 -1.1091 -11.2685 -0.1818 23 6 -1.6996 -10.6415 1.0547 24 8 -0.9834 -10.0738 1.8451 25 8 -3.0214 -10.7128 1.2776 26 7 0.8599 -9.8227 -0.0950 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6175 -4.9213 -0.8881 30 1 0.6168 -4.9202 0.8919 31 1 3.1495 -5.7992 0.0030 32 1 3.5735 -8.0964 0.0794 33 1 4.1350 -10.4287 -0.2080 34 1 3.2866 -12.7540 -0.4061 35 1 0.8294 -13.1321 -0.3867 36 1 -1.5508 -10.8115 -1.0673 37 1 -1.3185 -12.3383 -0.1822 38 1 -3.3537 -10.2961 2.0845 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610623024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:21 Heat of formation + Delta-G solvation = -132.289132 kcal Electronic energy + Delta-G solvation = -25889.257974 eV Core-core repulsion = 21731.346366 eV Total energy + Delta-G solvation = -4157.911608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97643 -41.18228 -40.52178 -39.83909 -37.04459 -36.36201 -36.07558 -35.30125 -33.79840 -33.39903 -32.44592 -29.78009 -28.77592 -26.48881 -24.67397 -24.04749 -22.22086 -21.88662 -21.40170 -20.16296 -19.65570 -19.04286 -18.60845 -17.66509 -17.40112 -17.15771 -16.96252 -16.92389 -16.58822 -16.29653 -16.19976 -15.90267 -15.61356 -15.12687 -14.84039 -14.79222 -13.99064 -13.96855 -13.75905 -13.62860 -13.55791 -13.32292 -12.91906 -12.86659 -12.47147 -12.42421 -12.13424 -11.76943 -11.58522 -11.55378 -11.50311 -10.66185 -10.58684 -10.23838 -10.10551 -10.01955 -9.16003 -8.52382 -6.02957 0.13848 0.50208 1.33805 1.35439 1.36354 1.42864 1.55538 1.87192 2.04184 2.26300 2.26779 2.82417 3.05891 3.13588 3.14748 3.37652 3.84070 4.07906 4.17067 4.26365 4.34277 4.39261 4.40832 4.46533 4.49746 4.57717 4.87712 5.03461 5.23955 5.30464 5.35809 5.37029 5.71408 5.73530 5.89852 5.92100 6.45606 6.73697 7.01403 7.08595 7.24478 7.41387 7.54435 7.91515 8.64726 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002423 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.612323 B =11554.423143 C =12763.119659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.144 3.856 13 N -0.719 5.719 14 C 0.693 3.307 15 O -0.571 6.571 16 N -0.660 5.660 17 C 0.347 3.653 18 C -0.201 4.201 19 C -0.044 4.044 20 C -0.186 4.186 21 C 0.128 3.872 22 C -0.056 4.056 23 C 0.478 3.522 24 O -0.542 6.542 25 O -0.516 6.516 26 N -0.500 5.500 27 H 0.280 0.720 28 H 0.398 0.602 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.430 0.570 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.176 0.824 36 H 0.129 0.871 37 H 0.168 0.832 38 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -27.989 -1.630 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.510 6.510 12 C 0.016 3.984 13 N -0.378 5.378 14 C 0.392 3.608 15 O -0.445 6.445 16 N -0.310 5.310 17 C 0.115 3.885 18 C -0.224 4.224 19 C -0.070 4.070 20 C -0.207 4.207 21 C -0.011 4.011 22 C -0.094 4.094 23 C 0.321 3.679 24 O -0.431 6.431 25 O -0.330 6.330 26 N -0.214 5.214 27 H 0.090 0.910 28 H 0.233 0.767 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.249 0.751 32 H 0.269 0.731 33 H 0.183 0.817 34 H 0.199 0.801 35 H 0.194 0.806 36 H 0.146 0.854 37 H 0.185 0.815 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -0.246 -27.204 -1.694 27.258 hybrid contribution 0.853 1.268 0.693 1.678 sum 0.607 -25.935 -1.001 25.962 Atomic orbital electron populations 1.69682 1.07087 1.29695 1.49232 1.26164 0.96546 1.02777 0.95723 0.84846 0.77896 0.76336 0.78770 1.19439 1.19647 1.19381 1.19754 0.93000 0.83458 1.50441 0.89451 1.41834 1.09597 1.04602 1.63382 1.20315 0.88087 0.85762 0.83626 1.90460 1.15033 1.87511 1.58032 1.20559 0.90939 0.83098 1.03850 1.44686 1.11140 1.02890 1.79125 1.16057 0.85410 0.80715 0.78575 1.91012 1.14714 1.83585 1.55156 1.42491 1.10754 1.02659 1.75079 1.18524 0.89816 0.84411 0.95748 1.21819 1.01072 0.92291 1.07227 1.21830 0.95859 0.96595 0.92734 1.22216 0.94112 1.00451 1.03960 1.20854 0.96032 0.88118 0.96082 1.20364 0.89154 1.05448 0.94404 1.23623 0.80102 0.76444 0.87737 1.90786 1.62429 1.41356 1.48541 1.84456 1.24570 1.74435 1.49496 1.67198 1.14460 1.25078 1.14690 0.91030 0.76743 0.89075 0.89497 0.75101 0.73116 0.81683 0.80115 0.80637 0.85364 0.81471 0.71587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.34 -18.86 9.68 84.04 0.81 -18.04 16 8 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 9 N -0.56 -28.79 5.29 -306.98 -1.62 -30.41 16 10 C 0.44 20.70 7.85 87.66 0.69 21.39 16 11 O -0.62 -32.61 15.24 -3.05 -0.05 -32.66 16 12 C 0.14 5.66 6.15 85.63 0.53 6.18 16 13 N -0.72 -25.48 5.53 -482.30 -2.67 -28.14 16 14 C 0.69 24.97 8.52 179.06 1.53 26.50 16 15 O -0.57 -25.09 14.61 -3.97 -0.06 -25.15 16 16 N -0.66 -18.02 5.39 -322.21 -1.74 -19.76 16 17 C 0.35 9.37 7.42 132.92 0.99 10.36 16 18 C -0.20 -3.36 9.94 22.49 0.22 -3.13 16 19 C -0.04 -0.53 10.17 22.44 0.23 -0.30 16 20 C -0.19 -2.51 9.70 22.37 0.22 -2.29 16 21 C 0.13 2.85 5.76 42.50 0.24 3.09 16 22 C -0.06 -0.94 6.21 29.10 0.18 -0.76 16 23 C 0.48 11.54 8.26 71.23 0.59 12.12 16 24 O -0.54 -18.99 16.09 21.96 0.35 -18.63 16 25 O -0.52 -9.17 13.42 -51.51 -0.69 -9.86 16 26 N -0.50 -15.73 6.75 -181.13 -1.22 -16.95 16 27 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 29 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.41 13.70 7.46 -92.71 -0.69 13.01 16 32 H 0.43 8.19 8.72 -92.71 -0.81 7.38 16 33 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.18 0.81 7.94 -2.91 -0.02 0.79 16 36 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.17 1.01 7.86 -2.38 -0.02 0.99 16 38 H 0.42 4.86 9.10 -74.06 -0.67 4.19 16 Total: -1.00 -87.49 346.41 -0.42 -87.91 By element: Atomic # 1 Polarization: 45.44 SS G_CDS: -1.72 Total: 43.72 kcal Atomic # 6 Polarization: 48.29 SS G_CDS: 6.69 Total: 54.98 kcal Atomic # 7 Polarization: -137.56 SS G_CDS: -6.97 Total: -144.53 kcal Atomic # 8 Polarization: -85.86 SS G_CDS: -0.44 Total: -86.30 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -87.49 -0.42 -87.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.382 kcal (2) G-P(sol) polarization free energy of solvation -87.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds