Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47365 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99785 * 2 1 3 5 5 N 1.46494 * 109.47244 * 185.00315 * 4 2 1 6 6 C 1.36938 * 119.99998 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00349 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00173 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00166 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46997 * 60.00007 * 10 8 6 12 12 H 1.48500 * 109.47292 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47369 * 300.00018 * 10 8 6 14 14 N 1.46502 * 109.46886 * 119.99239 * 2 1 3 15 15 C 1.34769 * 120.00450 * 274.72569 * 14 2 1 16 16 O 1.21698 * 120.00019 * 355.19264 * 15 14 2 17 17 C 1.46754 * 120.00276 * 175.19102 * 15 14 2 18 18 C 1.39970 * 120.86133 * 185.85975 * 17 15 14 19 19 N 1.31618 * 119.29084 * 179.70117 * 18 17 15 20 20 C 1.33671 * 122.37267 * 0.65397 * 19 18 17 21 21 S 1.71468 * 128.66210 * 179.63162 * 20 19 18 22 22 C 1.75593 * 91.30415 * 179.97438 * 21 20 19 23 23 C 1.31035 * 109.49386 * 359.97438 * 22 21 20 24 24 N 1.35125 * 121.39802 * 359.60241 * 20 19 18 25 25 C 1.36386 * 119.25987 * 0.05390 * 24 20 19 26 26 O 1.21877 * 120.29708 * 180.02562 * 25 24 20 27 27 H 1.09005 * 109.47044 * 60.00218 * 1 2 3 28 28 H 1.08996 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47459 * 300.00501 * 1 2 3 30 30 H 1.09005 * 109.46986 * 304.99797 * 4 2 1 31 31 H 1.09002 * 109.47335 * 64.99937 * 4 2 1 32 32 H 0.97002 * 120.00128 * 359.97438 * 5 4 2 33 33 H 0.96999 * 120.00093 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99629 * 95.00113 * 14 2 1 35 35 H 1.08004 * 120.35500 * 0.02562 * 18 17 15 36 36 H 1.07993 * 125.25142 * 180.02562 * 22 21 20 37 37 H 1.08004 * 122.30928 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.1838 -1.4389 -2.2065 7 1 3.6468 -1.8448 -3.0510 8 6 5.5673 -1.5381 -2.1511 9 7 6.2219 -1.0430 -1.1222 10 14 6.5000 -2.3743 -3.5368 11 1 6.2426 -1.6559 -4.8108 12 1 7.9549 -2.3490 -3.2402 13 1 6.0442 -3.7821 -3.6615 14 7 2.0183 -0.6905 1.1963 15 6 2.1522 -0.0168 2.3558 16 8 1.9518 1.1831 2.3890 17 6 2.5398 -0.7300 3.5784 18 6 2.5661 -0.0740 4.8146 19 7 2.9127 -0.7452 5.8924 20 6 3.2560 -2.0364 5.8520 21 16 3.7388 -3.0574 7.1422 22 6 3.9311 -4.4168 6.0476 23 6 3.6337 -4.0416 4.8278 24 7 3.2572 -2.7285 4.6914 25 6 2.9016 -2.0950 3.5371 26 8 2.8957 -2.7012 2.4798 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6055 -1.7199 -1.2950 31 1 1.7517 -0.1584 -2.1370 32 1 3.9824 -0.4622 -0.4317 33 1 7.1886 -1.1126 -1.0833 34 1 2.2490 -1.6316 1.1528 35 1 2.2998 0.9703 4.8841 36 1 4.2452 -5.4092 6.3353 37 1 3.6824 -4.7184 3.9876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754233766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = 28.725736 kcal Electronic energy + Delta-G solvation = -24723.068662 eV Core-core repulsion = 21014.892053 eV Total energy + Delta-G solvation = -3708.176608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.73943 -39.48747 -38.01551 -37.36069 -35.88613 -33.45019 -31.87085 -31.56360 -30.76187 -29.68455 -26.83718 -25.54954 -24.55416 -23.24033 -22.45660 -21.01764 -20.04869 -19.50906 -18.89416 -17.99615 -17.09211 -17.02723 -16.53062 -15.80857 -15.53385 -14.97906 -14.67376 -14.54517 -14.28952 -13.85754 -13.65728 -13.59350 -13.46872 -13.18573 -12.73145 -12.24829 -12.10200 -12.08173 -11.98464 -11.47768 -10.82388 -10.75154 -10.70782 -10.68513 -10.49224 -10.24744 -9.96947 -9.85967 -9.63982 -9.54117 -8.81362 -8.46674 -8.01500 -6.84203 -5.67819 -2.96708 -0.40572 0.12575 0.86418 0.88408 1.57713 1.77899 2.78338 3.47962 3.51432 3.53080 3.64858 3.76593 3.77384 3.94426 4.53910 4.62094 4.65170 4.78920 5.06278 5.25956 5.42661 5.48290 5.64165 5.65219 5.81523 5.82901 5.92335 6.16769 6.24805 6.32179 6.52817 6.64141 6.85761 7.14366 7.17799 7.36991 7.75561 8.22086 8.49878 8.80267 9.61144 10.19885 10.55486 11.54773 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.004014 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.719503 B = 6973.376190 C = 8465.423447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 H 0.087 0.913 4 C 0.146 3.854 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.932 5.932 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.698 5.698 15 C 0.585 3.415 16 O -0.558 6.558 17 C -0.328 4.328 18 C 0.259 3.741 19 N -0.523 5.523 20 C 0.277 3.723 21 S 0.273 5.727 22 C -0.247 4.247 23 C 0.073 3.927 24 N -0.453 5.453 25 C 0.539 3.461 26 O -0.492 6.492 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.386 0.614 33 H 0.254 0.746 34 H 0.416 0.584 35 H 0.194 0.806 36 H 0.206 0.794 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -7.081 21.175 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.105 0.895 4 C 0.017 3.983 5 N -0.374 5.374 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.580 5.580 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.356 5.356 15 C 0.371 3.629 16 O -0.440 6.440 17 C -0.343 4.343 18 C 0.105 3.895 19 N -0.251 5.251 20 C -0.086 4.086 21 S 0.526 5.474 22 C -0.384 4.384 23 C -0.054 4.054 24 N -0.162 5.162 25 C 0.341 3.659 26 O -0.366 6.366 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.210 0.790 36 H 0.223 0.777 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.180 -6.195 22.323 24.568 hybrid contribution 0.799 -1.410 -2.786 3.224 sum -7.381 -7.605 19.536 22.226 Atomic orbital electron populations 1.22095 0.95634 1.01734 1.01973 1.21254 0.93239 0.98159 0.84919 0.89456 1.20958 0.86897 0.96879 0.93523 1.42333 0.99754 1.70124 1.25207 1.19195 0.89441 1.29302 0.99064 0.91225 1.24740 0.96425 1.01739 0.98060 1.69682 1.07081 1.50954 1.30328 0.86264 0.78930 0.79265 0.81693 1.21269 1.21778 1.21365 1.46448 1.64693 1.16130 1.08376 1.16983 0.77139 0.86184 0.82565 1.90761 1.53675 1.13551 1.85982 1.21490 1.21639 0.93016 0.98190 1.23290 0.81749 0.99614 0.84869 1.68311 1.24253 1.01473 1.31055 1.25993 0.96244 0.95283 0.91103 1.84329 1.66075 0.95344 1.01666 1.25390 1.12103 1.05922 0.95007 1.21211 0.98325 0.85021 1.00819 1.45387 1.50069 1.10305 1.10433 1.17459 0.78808 0.87953 0.81706 1.90779 1.52973 1.66604 1.26266 0.91651 0.92728 0.92544 0.95991 0.94916 0.77967 0.93628 0.73833 0.78957 0.77681 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.49 37.16 0.35 -2.09 16 2 C 0.13 2.54 2.78 -67.93 -0.19 2.35 16 3 H 0.09 1.85 7.50 -51.93 -0.39 1.46 16 4 C 0.15 3.21 5.82 -4.05 -0.02 3.18 16 5 N -0.73 -20.01 5.43 -59.91 -0.33 -20.33 16 6 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 7 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -29.68 13.06 55.49 0.72 -28.96 16 10 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 14 N -0.70 -14.15 4.43 -55.09 -0.24 -14.39 16 15 C 0.59 11.52 7.70 -12.82 -0.10 11.42 16 16 O -0.56 -11.79 16.05 5.19 0.08 -11.70 16 17 C -0.33 -5.48 5.91 -104.65 -0.62 -6.10 16 18 C 0.26 3.52 10.85 -16.99 -0.18 3.34 16 19 N -0.52 -6.39 10.39 -13.57 -0.14 -6.54 16 20 C 0.28 2.99 8.07 -87.59 -0.71 2.28 16 21 S 0.27 1.61 23.15 -107.50 -2.49 -0.88 16 22 C -0.25 -1.20 11.13 29.01 0.32 -0.88 16 23 C 0.07 0.62 10.52 -16.84 -0.18 0.44 16 24 N -0.45 -5.55 2.82 -67.14 -0.19 -5.74 16 25 C 0.54 8.86 7.54 -14.37 -0.11 8.75 16 26 O -0.49 -9.50 14.11 5.03 0.07 -9.43 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.39 11.42 7.33 -40.82 -0.30 11.12 16 33 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 34 H 0.42 8.91 5.24 -40.82 -0.21 8.69 16 35 H 0.19 2.28 7.72 -52.48 -0.41 1.87 16 36 H 0.21 0.21 8.06 -52.49 -0.42 -0.21 16 37 H 0.20 1.53 8.00 -52.48 -0.42 1.11 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -37.68 336.32 -7.95 -45.63 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -3.81 Total: 14.06 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: -1.68 Total: 14.99 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -0.18 Total: -75.96 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.15 Total: -21.13 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.49 Total: -0.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.68 -7.95 -45.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754233766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.358 kcal (2) G-P(sol) polarization free energy of solvation -37.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds