Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47365 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99785 * 2 1 3 5 5 N 1.46494 * 109.47244 * 185.00315 * 4 2 1 6 6 C 1.36938 * 119.99998 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00349 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00173 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00166 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46997 * 60.00007 * 10 8 6 12 12 H 1.48500 * 109.47292 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47369 * 300.00018 * 10 8 6 14 14 N 1.46502 * 109.46886 * 119.99239 * 2 1 3 15 15 C 1.34769 * 120.00450 * 274.72569 * 14 2 1 16 16 O 1.21698 * 120.00019 * 355.19264 * 15 14 2 17 17 C 1.46754 * 120.00276 * 175.19102 * 15 14 2 18 18 C 1.39970 * 120.86133 * 185.85975 * 17 15 14 19 19 N 1.31618 * 119.29084 * 179.70117 * 18 17 15 20 20 C 1.33671 * 122.37267 * 0.65397 * 19 18 17 21 21 S 1.71468 * 128.66210 * 179.63162 * 20 19 18 22 22 C 1.75593 * 91.30415 * 179.97438 * 21 20 19 23 23 C 1.31035 * 109.49386 * 359.97438 * 22 21 20 24 24 N 1.35125 * 121.39802 * 359.60241 * 20 19 18 25 25 C 1.36386 * 119.25987 * 0.05390 * 24 20 19 26 26 O 1.21877 * 120.29708 * 180.02562 * 25 24 20 27 27 H 1.09005 * 109.47044 * 60.00218 * 1 2 3 28 28 H 1.08996 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47459 * 300.00501 * 1 2 3 30 30 H 1.09005 * 109.46986 * 304.99797 * 4 2 1 31 31 H 1.09002 * 109.47335 * 64.99937 * 4 2 1 32 32 H 0.97002 * 120.00128 * 359.97438 * 5 4 2 33 33 H 0.96999 * 120.00093 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99629 * 95.00113 * 14 2 1 35 35 H 1.08004 * 120.35500 * 0.02562 * 18 17 15 36 36 H 1.07993 * 125.25142 * 180.02562 * 22 21 20 37 37 H 1.08004 * 122.30928 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.1838 -1.4389 -2.2065 7 1 3.6468 -1.8448 -3.0510 8 6 5.5673 -1.5381 -2.1511 9 7 6.2219 -1.0430 -1.1222 10 14 6.5000 -2.3743 -3.5368 11 1 6.2426 -1.6559 -4.8108 12 1 7.9549 -2.3490 -3.2402 13 1 6.0442 -3.7821 -3.6615 14 7 2.0183 -0.6905 1.1963 15 6 2.1522 -0.0168 2.3558 16 8 1.9518 1.1831 2.3890 17 6 2.5398 -0.7300 3.5784 18 6 2.5661 -0.0740 4.8146 19 7 2.9127 -0.7452 5.8924 20 6 3.2560 -2.0364 5.8520 21 16 3.7388 -3.0574 7.1422 22 6 3.9311 -4.4168 6.0476 23 6 3.6337 -4.0416 4.8278 24 7 3.2572 -2.7285 4.6914 25 6 2.9016 -2.0950 3.5371 26 8 2.8957 -2.7012 2.4798 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6055 -1.7199 -1.2950 31 1 1.7517 -0.1584 -2.1370 32 1 3.9824 -0.4622 -0.4317 33 1 7.1886 -1.1126 -1.0833 34 1 2.2490 -1.6316 1.1528 35 1 2.2998 0.9703 4.8841 36 1 4.2452 -5.4092 6.3353 37 1 3.6824 -4.7184 3.9876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754233766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = 0.169277 kcal Electronic energy + Delta-G solvation = -24724.306963 eV Core-core repulsion = 21014.892053 eV Total energy + Delta-G solvation = -3709.414909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.69483 -40.85238 -39.21513 -38.36648 -37.52575 -35.42475 -33.14498 -32.65534 -32.32419 -31.23697 -27.82092 -27.44676 -25.54365 -24.69333 -24.00703 -22.34131 -21.51388 -20.35703 -19.93277 -19.41359 -18.86530 -18.06625 -17.73608 -17.23197 -16.73553 -16.58771 -15.98763 -15.58505 -15.49989 -15.27307 -15.22063 -15.09856 -14.83219 -14.43155 -14.01396 -13.73988 -13.69455 -13.45857 -13.11338 -12.77209 -12.71321 -12.65196 -12.23330 -11.94984 -11.85223 -11.73079 -11.46499 -11.41829 -11.04630 -10.90020 -10.76278 -9.98101 -9.05486 -8.94129 -7.96554 -5.27634 -1.33889 -0.58971 0.04530 0.25457 0.66550 0.90695 1.42722 1.48110 1.53885 1.55214 2.33464 2.49515 2.53692 2.87162 2.93084 3.36373 3.70024 3.78604 3.97934 3.99004 4.09348 4.14922 4.23137 4.30380 4.48441 4.69000 4.77346 4.80046 4.87547 4.88686 5.01297 5.08315 5.26499 5.44537 5.65089 6.16871 6.22587 6.23398 6.71662 7.28537 7.30099 8.02482 8.27760 9.27144 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.004014 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.719503 B = 6973.376190 C = 8465.423447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.132 3.868 3 H 0.064 0.936 4 C 0.146 3.854 5 N -0.744 5.744 6 C -0.250 4.250 7 H 0.081 0.919 8 C -0.078 4.078 9 N -0.973 5.973 10 Si 0.982 3.018 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.276 1.276 14 N -0.706 5.706 15 C 0.580 3.420 16 O -0.587 6.587 17 C -0.383 4.383 18 C 0.287 3.713 19 N -0.534 5.534 20 C 0.245 3.755 21 S 0.386 5.614 22 C -0.201 4.201 23 C 0.024 3.976 24 N -0.452 5.452 25 C 0.534 3.466 26 O -0.540 6.540 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.410 0.590 35 H 0.204 0.796 36 H 0.257 0.743 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 -9.447 23.469 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.082 0.918 4 C 0.019 3.981 5 N -0.386 5.386 6 C -0.381 4.381 7 H 0.098 0.902 8 C -0.270 4.270 9 N -0.623 5.623 10 Si 0.810 3.190 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.202 1.202 14 N -0.365 5.365 15 C 0.369 3.631 16 O -0.471 6.471 17 C -0.399 4.399 18 C 0.128 3.872 19 N -0.262 5.262 20 C -0.114 4.114 21 S 0.639 5.361 22 C -0.338 4.338 23 C -0.101 4.101 24 N -0.158 5.158 25 C 0.338 3.662 26 O -0.419 6.419 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.255 0.745 35 H 0.221 0.779 36 H 0.273 0.727 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.041 -8.645 24.674 27.353 hybrid contribution 0.809 -0.868 -3.105 3.325 sum -7.232 -9.514 21.568 24.658 Atomic orbital electron populations 1.21989 0.92347 1.02728 1.03037 1.21206 0.95694 0.96354 0.84078 0.91761 1.21116 0.84147 0.97557 0.95230 1.42535 1.01851 1.69969 1.24295 1.19682 0.90123 1.28745 0.99571 0.90161 1.25688 0.97455 1.02997 1.00856 1.69885 1.06942 1.52833 1.32678 0.85094 0.76887 0.78487 0.78551 1.20059 1.22093 1.20151 1.46545 1.65248 1.15842 1.08820 1.17425 0.76346 0.86057 0.83275 1.90704 1.55318 1.14528 1.86594 1.21169 1.26890 0.93913 0.97927 1.23417 0.79652 0.99961 0.84198 1.68381 1.25499 1.02356 1.29981 1.27086 0.96118 0.95629 0.92540 1.84213 1.60904 0.92703 0.98231 1.26156 1.06848 1.07564 0.93192 1.21514 1.01951 0.83821 1.02829 1.45251 1.49144 1.11705 1.09737 1.17380 0.78642 0.87996 0.82201 1.90714 1.55540 1.67561 1.28040 0.89413 0.91710 0.92570 0.95343 0.93660 0.79795 0.94145 0.74518 0.77948 0.72656 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.49 71.98 0.68 -3.84 16 2 C 0.13 5.43 2.78 44.99 0.12 5.56 16 3 H 0.06 2.92 7.50 -2.39 -0.02 2.90 16 4 C 0.15 6.64 5.82 86.38 0.50 7.14 16 5 N -0.74 -42.44 5.43 -343.46 -1.87 -44.31 16 6 C -0.25 -15.04 9.99 84.03 0.84 -14.20 16 7 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 8 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 9 N -0.97 -64.07 13.06 21.65 0.28 -63.79 16 10 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 N -0.71 -30.81 4.43 -446.43 -1.98 -32.78 16 15 C 0.58 24.74 7.70 86.47 0.67 25.40 16 16 O -0.59 -26.63 16.05 -4.34 -0.07 -26.70 16 17 C -0.38 -13.80 5.91 -19.88 -0.12 -13.91 16 18 C 0.29 8.16 10.85 85.14 0.92 9.09 16 19 N -0.53 -12.75 10.39 -196.86 -2.04 -14.80 16 20 C 0.25 4.91 8.07 179.29 1.45 6.36 16 21 S 0.39 2.70 23.15 -56.49 -1.31 1.40 16 22 C -0.20 -0.97 11.13 67.75 0.75 -0.22 16 23 C 0.02 0.36 10.52 83.77 0.88 1.24 16 24 N -0.45 -11.02 2.82 -483.56 -1.36 -12.38 16 25 C 0.53 18.76 7.54 84.73 0.64 19.40 16 26 O -0.54 -22.63 14.11 -4.92 -0.07 -22.70 16 27 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.37 23.20 7.33 -92.71 -0.68 22.52 16 33 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.41 18.99 5.24 -92.71 -0.49 18.51 16 35 H 0.20 5.05 7.72 -2.91 -0.02 5.03 16 36 H 0.26 -1.33 8.06 -2.91 -0.02 -1.36 16 37 H 0.20 3.01 8.00 -2.91 -0.02 2.99 16 Total: -1.00 -88.26 336.32 1.40 -86.86 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -0.02 Total: 41.02 kcal Atomic # 6 Polarization: 29.88 SS G_CDS: 7.81 Total: 37.69 kcal Atomic # 7 Polarization: -161.09 SS G_CDS: -6.97 Total: -168.06 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.14 Total: -49.41 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.40 kcal Total: -88.26 1.40 -86.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754233766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.026 kcal (2) G-P(sol) polarization free energy of solvation -88.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds