Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48501 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47018 * 299.99835 * 3 2 1 6 6 H 1.48496 * 109.47535 * 59.99824 * 3 2 1 7 7 C 1.38809 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00260 * 170.66146 * 7 2 1 9 9 N 1.36940 * 119.99995 * 350.66191 * 7 2 1 10 10 C 1.48147 * 127.83770 * 164.90645 * 9 7 2 11 11 C 1.54388 * 104.61278 * 140.41634 * 10 9 7 12 12 H 1.08996 * 118.18688 * 244.19880 * 11 10 9 13 13 C 1.53008 * 118.12262 * 87.19785 * 11 10 9 14 14 H 1.08997 * 117.40490 * 16.11412 * 13 11 10 15 15 C 1.52992 * 117.44427 * 160.80656 * 13 11 10 16 16 N 1.46496 * 109.47232 * 244.23870 * 15 13 11 17 17 C 1.34774 * 120.00331 * 180.02562 * 16 15 13 18 18 O 1.21287 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00326 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.45620 * 39.96885 * 19 17 16 21 21 C 1.53043 * 109.46141 * 279.99838 * 19 17 16 22 22 C 1.50809 * 109.23192 * 286.70781 * 21 19 17 23 23 O 1.21229 * 120.01876 * 145.75794 * 22 21 19 24 24 N 1.34564 * 119.96477 * 325.73838 * 22 21 19 25 25 C 1.34343 * 120.98496 * 4.43439 * 24 22 21 26 26 O 1.21535 * 119.20460 * 191.99686 * 25 24 22 27 27 N 1.34284 * 121.58471 * 12.02402 * 25 24 22 28 28 C 1.53003 * 60.55431 * 268.45557 * 13 11 10 29 29 H 1.09004 * 119.53712 * 248.23694 * 28 13 11 30 30 C 1.51831 * 127.60988 * 345.25247 * 9 7 2 31 31 H 0.96997 * 119.99798 * 359.97438 * 1 2 3 32 32 H 1.08994 * 110.40734 * 21.63622 * 10 9 7 33 33 H 1.08990 * 110.41172 * 259.20135 * 10 9 7 34 34 H 1.09006 * 109.47081 * 124.23499 * 15 13 11 35 35 H 1.09007 * 109.47296 * 4.23763 * 15 13 11 36 36 H 0.97005 * 120.00000 * 359.97438 * 16 15 13 37 37 H 1.08994 * 109.52219 * 166.76954 * 21 19 17 38 38 H 1.09003 * 109.52136 * 46.64604 * 21 19 17 39 39 H 0.97000 * 119.50359 * 184.41289 * 24 22 21 40 40 H 0.97005 * 119.53781 * 185.67090 * 27 25 24 41 41 H 1.08994 * 111.95704 * 100.91896 * 30 9 7 42 42 H 1.09006 * 110.52781 * 337.31642 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0795 -1.2084 -0.1512 9 7 1.3392 -2.3801 0.1935 10 6 1.8229 -3.7553 -0.0705 11 6 1.2860 -4.5906 1.1117 12 1 2.0075 -5.0432 1.7919 13 6 -0.1173 -5.1888 0.9937 14 1 -0.5628 -5.2309 -0.0002 15 6 -0.4684 -6.3522 1.9231 16 7 -0.7142 -7.5567 1.1264 17 6 -1.0427 -8.7128 1.7363 18 8 -1.1343 -8.7561 2.9449 19 6 -1.2950 -9.9520 0.9167 20 1 -0.5709 -10.0032 0.1036 21 6 -2.7103 -9.9003 0.3366 22 6 -3.7081 -10.1573 1.4378 23 8 -4.7840 -9.5987 1.4238 24 7 -3.4039 -11.0073 2.4356 25 6 -2.1863 -11.5690 2.5186 26 8 -2.0097 -12.4902 3.2914 27 7 -1.1598 -11.1368 1.7685 28 6 0.0609 -3.8081 1.6285 29 1 -0.1301 -3.6777 2.6937 30 6 -0.0725 -2.5668 0.7203 31 1 -0.4850 0.8400 0.0004 32 1 2.9124 -3.7781 -0.0881 33 1 1.4188 -4.1261 -1.0123 34 1 -1.3640 -6.1044 2.4930 35 1 0.3599 -6.5326 2.6083 36 1 -0.6413 -7.5220 0.1597 37 1 -2.8156 -10.6625 -0.4354 38 1 -2.8908 -8.9163 -0.0961 39 1 -4.0736 -11.2172 3.1052 40 1 -0.3163 -11.6155 1.7908 41 1 -0.7850 -2.7578 -0.0821 42 1 -0.3802 -1.6996 1.3047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978797881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = -30.372562 kcal Electronic energy + Delta-G solvation = -26673.887518 eV Core-core repulsion = 22656.228439 eV Total energy + Delta-G solvation = -4017.659079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24382 -39.94320 -39.22054 -38.73619 -36.29408 -35.15301 -34.67747 -33.39450 -31.60233 -30.75377 -27.94625 -27.19134 -26.07697 -24.63497 -23.88013 -21.67588 -21.28205 -20.50422 -19.85286 -19.26932 -18.66388 -18.34422 -17.55713 -16.93071 -16.79694 -16.44919 -16.02232 -15.67953 -15.03538 -14.97918 -14.82177 -14.56388 -14.28929 -13.86544 -13.79658 -13.33446 -12.98540 -12.89826 -12.76078 -12.64075 -11.92274 -11.31726 -11.21660 -11.16428 -10.88435 -10.85948 -10.75204 -10.70702 -10.59985 -10.41774 -10.14876 -9.78469 -9.71963 -9.57379 -9.22596 -9.11624 -8.71666 -6.93103 -5.83854 -3.17102 1.28270 1.92967 2.17965 2.43009 2.79083 2.89725 3.34957 3.41261 3.43500 3.68976 3.83540 3.99783 4.17437 4.33046 4.42422 4.51550 4.74097 4.78023 5.16997 5.26724 5.34972 5.41459 5.42685 5.64176 5.76083 5.77338 5.79449 5.85234 6.09809 6.15258 6.25604 6.45772 6.56820 6.61022 6.78773 6.82440 7.05272 7.11549 7.24537 7.46393 7.65727 7.73522 7.79236 8.10033 9.01702 9.68551 10.44464 11.31134 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033772 B = 0.002163 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.894582 B =12944.301535 C =13295.634837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.157 3.843 11 C -0.168 4.168 12 H 0.103 0.897 13 C -0.153 4.153 14 H 0.104 0.896 15 C 0.154 3.846 16 N -0.714 5.714 17 C 0.486 3.514 18 O -0.522 6.522 19 C 0.121 3.879 20 H 0.138 0.862 21 C -0.150 4.150 22 C 0.524 3.476 23 O -0.493 6.493 24 N -0.670 5.670 25 C 0.726 3.274 26 O -0.555 6.555 27 N -0.706 5.706 28 C -0.159 4.159 29 H 0.102 0.898 30 C 0.183 3.817 31 H 0.254 0.746 32 H 0.050 0.950 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.428 0.572 40 H 0.428 0.572 41 H 0.030 0.970 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 -22.682 -1.920 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.030 3.970 11 C -0.188 4.188 12 H 0.121 0.879 13 C -0.172 4.172 14 H 0.122 0.878 15 C 0.031 3.969 16 N -0.366 5.366 17 C 0.269 3.731 18 O -0.397 6.397 19 C 0.011 3.989 20 H 0.155 0.845 21 C -0.191 4.191 22 C 0.311 3.689 23 O -0.365 6.365 24 N -0.340 5.340 25 C 0.426 3.574 26 O -0.429 6.429 27 N -0.365 5.365 28 C -0.180 4.180 29 H 0.120 0.880 30 C 0.059 3.941 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.239 0.761 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.269 0.731 40 H 0.268 0.732 41 H 0.048 0.952 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.858 -22.464 -0.797 22.807 hybrid contribution 0.591 0.751 -0.162 0.969 sum -3.267 -21.714 -0.958 21.979 Atomic orbital electron populations 1.69890 1.05049 1.25317 1.56071 1.24869 0.95646 0.97932 1.01951 0.86057 0.78859 0.83594 0.77298 1.20405 1.21717 1.21613 1.19055 0.90822 0.82510 1.42956 0.90528 1.46107 1.12345 0.99737 1.74250 1.21080 0.97049 0.86076 0.92747 1.24017 0.89707 1.02422 1.02690 0.87896 1.22543 1.00609 0.93892 1.00199 0.87766 1.20945 1.01330 0.81816 0.92830 1.46016 1.69945 1.09559 1.11103 1.20950 0.78051 0.84973 0.89165 1.90790 1.50226 1.84759 1.13964 1.21124 0.99179 0.84957 0.93626 0.84451 1.22265 0.90753 1.08401 0.97681 1.20755 0.88364 0.77148 0.82649 1.90830 1.24293 1.45749 1.75597 1.44159 1.14891 1.45157 1.29791 1.15504 0.80345 0.81353 0.80212 1.91048 1.82668 1.30203 1.38963 1.44755 1.15327 1.29396 1.47054 1.24147 1.02093 0.91548 1.00181 0.87956 1.21724 0.86310 0.92603 0.93491 0.93606 0.93171 0.95991 0.90939 0.91168 0.76109 0.85182 0.84922 0.73070 0.73163 0.95176 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.84 55.49 0.60 -25.64 16 2 C -0.01 -0.19 5.41 -17.43 -0.09 -0.29 16 3 Si 0.91 21.54 29.56 -169.99 -5.03 16.52 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.11 10.36 -15.06 -0.16 -6.27 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 9 N -0.60 -14.73 3.45 -165.71 -0.57 -15.30 16 10 C 0.16 3.04 7.05 -2.41 -0.02 3.03 16 11 C -0.17 -2.69 6.74 -89.21 -0.60 -3.29 16 12 H 0.10 1.52 8.12 -51.93 -0.42 1.10 16 13 C -0.15 -2.04 5.38 -90.62 -0.49 -2.52 16 14 H 0.10 1.33 8.04 -51.93 -0.42 0.91 16 15 C 0.15 1.75 5.95 -4.05 -0.02 1.73 16 16 N -0.71 -5.77 5.56 -60.29 -0.33 -6.11 16 17 C 0.49 4.35 6.72 -10.99 -0.07 4.27 16 18 O -0.52 -7.23 16.15 5.55 0.09 -7.14 16 19 C 0.12 0.54 3.64 -69.04 -0.25 0.29 16 20 H 0.14 0.01 8.14 -51.93 -0.42 -0.42 16 21 C -0.15 -0.63 5.70 -27.81 -0.16 -0.79 16 22 C 0.52 4.59 7.45 -11.03 -0.08 4.51 16 23 O -0.49 -6.07 17.93 5.60 0.10 -5.97 16 24 N -0.67 -5.99 5.18 -16.02 -0.08 -6.08 16 25 C 0.73 7.04 7.98 -87.75 -0.70 6.34 16 26 O -0.55 -7.30 17.97 5.33 0.10 -7.20 16 27 N -0.71 -4.46 4.91 -60.02 -0.29 -4.76 16 28 C -0.16 -2.79 6.76 -89.22 -0.60 -3.39 16 29 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 30 C 0.18 4.16 5.92 -0.29 0.00 4.16 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 36 H 0.40 2.02 8.40 -40.82 -0.34 1.68 16 37 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.13 0.43 8.07 -51.93 -0.42 0.02 16 39 H 0.43 3.58 8.86 -40.82 -0.36 3.22 16 40 H 0.43 1.96 8.90 -40.82 -0.36 1.59 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.34 6.58 -51.93 -0.34 2.00 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -37.45 356.01 -8.90 -46.35 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.59 Total: 2.19 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -3.25 Total: 7.77 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.68 Total: -57.88 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.29 Total: -20.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.45 -8.90 -46.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978797881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.976 kcal (2) G-P(sol) polarization free energy of solvation -37.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds