Wall clock time and date at job start Fri Apr 10 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00334 * 2 1 4 4 H 1.48500 * 109.47457 * 270.00641 * 3 2 1 5 5 H 1.48510 * 109.46786 * 30.00481 * 3 2 1 6 6 H 1.48497 * 109.47261 * 150.00205 * 3 2 1 7 7 C 1.38814 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99852 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00357 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00289 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52625 * 325.08065 * 10 9 7 12 12 C 1.53046 * 109.49651 * 204.99988 * 10 9 7 13 13 C 1.53039 * 109.52798 * 178.67721 * 12 10 9 14 14 C 1.53195 * 109.31257 * 61.36716 * 13 12 10 15 15 N 1.46919 * 108.77845 * 305.36660 * 14 13 12 16 16 C 1.34771 * 120.63234 * 233.62780 * 15 14 13 17 17 O 1.21291 * 120.00118 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00281 * 0.02562 * 16 15 14 19 19 N 1.46493 * 109.47294 * 179.97438 * 18 16 15 20 20 C 1.36163 * 119.85585 * 90.00631 * 19 18 16 21 21 C 1.35535 * 119.26220 * 179.97438 * 20 19 18 22 22 C 1.40740 * 119.00055 * 359.97438 * 21 20 19 23 23 O 1.35156 * 120.16982 * 180.02562 * 22 21 20 24 24 N 1.32436 * 119.66882 * 359.97438 * 22 21 20 25 25 C 1.33278 * 120.72398 * 359.72785 * 24 22 21 26 26 O 1.21971 * 119.46981 * 180.27828 * 25 24 22 27 27 C 1.46931 * 118.73612 * 53.60997 * 15 14 13 28 28 H 0.97000 * 119.99878 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99598 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.46115 * 58.66174 * 12 10 9 31 31 H 1.09004 * 109.45806 * 298.69059 * 12 10 9 32 32 H 1.08997 * 109.50134 * 181.32407 * 13 12 10 33 33 H 1.09006 * 109.49908 * 301.38992 * 13 12 10 34 34 H 1.08997 * 109.58182 * 65.15696 * 14 13 12 35 35 H 1.09000 * 109.58502 * 185.57641 * 14 13 12 36 36 H 1.09000 * 109.47185 * 300.00337 * 18 16 15 37 37 H 1.08995 * 109.46812 * 59.99667 * 18 16 15 38 38 H 1.08006 * 120.36584 * 0.02562 * 20 19 18 39 39 H 1.08002 * 120.50237 * 179.97438 * 21 20 19 40 40 H 0.96701 * 114.00690 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.58959 * 66.17523 * 27 15 14 42 42 H 1.09003 * 109.58181 * 186.46006 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5649 -3.2075 0.5874 12 6 5.5000 -2.2595 0.6081 13 6 6.2536 -3.5911 0.6387 14 6 6.4274 -4.1079 -0.7930 15 7 5.1075 -4.1761 -1.4347 16 6 4.6806 -5.3190 -2.0072 17 8 3.5890 -5.3624 -2.5342 18 6 5.5593 -6.5432 -1.9927 19 7 4.8735 -7.6447 -2.6726 20 6 5.0377 -7.8211 -4.0128 21 6 4.3979 -8.8445 -4.6296 22 6 3.5806 -9.6980 -3.8651 23 8 2.9321 -10.7261 -4.4559 24 7 3.4509 -9.4892 -2.5638 25 6 4.0904 -8.4826 -1.9686 26 8 3.9586 -8.3144 -0.7677 27 6 4.2617 -2.9747 -1.4400 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0007 30 1 5.3965 -1.8774 1.6236 31 1 6.0557 -1.5415 0.0048 32 1 7.2330 -3.4446 1.0940 33 1 5.6863 -4.3169 1.2215 34 1 7.0705 -3.4277 -1.3514 35 1 6.8748 -5.1016 -0.7709 36 1 6.4952 -6.3247 -2.5069 37 1 5.7691 -6.8275 -0.9616 38 1 5.6713 -7.1535 -4.5778 39 1 4.5135 -9.0027 -5.6916 40 1 2.3967 -11.2547 -3.8483 41 1 4.7282 -2.2021 -2.0512 42 1 3.2809 -3.2202 -1.8473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999624108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:25 Heat of formation + Delta-G solvation = -74.615017 kcal Electronic energy + Delta-G solvation = -27416.463288 eV Core-core repulsion = 23396.885712 eV Total energy + Delta-G solvation = -4019.577576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93903 -41.17923 -39.70346 -38.80269 -37.82292 -36.38818 -35.61660 -34.07933 -32.94978 -32.38481 -30.91617 -29.19736 -26.35296 -25.78721 -25.61443 -24.35344 -23.16547 -22.02230 -20.78680 -20.43776 -19.58231 -19.13102 -18.77150 -18.27238 -17.23626 -16.94880 -16.79745 -16.45799 -16.42336 -15.84208 -15.56678 -15.54043 -15.27791 -15.00826 -14.84685 -14.72088 -14.36762 -14.28526 -14.07700 -13.87483 -13.38695 -13.26564 -13.10452 -12.95801 -12.59183 -12.11709 -12.06085 -11.96009 -11.88237 -11.81642 -11.43759 -11.40752 -11.17663 -10.98523 -10.90881 -9.89284 -9.68709 -9.30202 -8.08127 -5.45350 -0.32007 0.66292 1.20970 1.34161 1.40311 1.42936 1.48397 1.95893 2.25822 2.44615 2.67330 3.22066 3.27598 3.34068 3.50050 3.62869 3.79568 3.94374 4.03323 4.04531 4.13257 4.14697 4.25383 4.34516 4.42859 4.55352 4.63155 4.71616 4.83402 4.89987 4.99274 5.13555 5.18824 5.31408 5.35391 5.43872 5.45010 5.69497 6.13801 6.15419 6.33251 6.64493 6.99743 7.01832 7.03864 7.72636 7.96573 9.14088 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.003048 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.988233 B = 9184.498142 C =10015.481373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.241 1.241 7 C -0.243 4.243 8 H 0.036 0.964 9 N -0.742 5.742 10 C 0.166 3.834 11 H 0.016 0.984 12 C -0.120 4.120 13 C -0.128 4.128 14 C 0.097 3.903 15 N -0.599 5.599 16 C 0.488 3.512 17 O -0.592 6.592 18 C 0.085 3.915 19 N -0.514 5.514 20 C 0.216 3.784 21 C -0.286 4.286 22 C 0.454 3.546 23 O -0.440 6.440 24 N -0.661 5.661 25 C 0.648 3.352 26 O -0.593 6.593 27 C 0.108 3.892 28 H 0.260 0.740 29 H 0.373 0.627 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.196 0.804 37 H 0.133 0.867 38 H 0.240 0.760 39 H 0.203 0.797 40 H 0.429 0.571 41 H 0.081 0.919 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.047 -16.163 -11.610 32.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.165 1.165 7 C -0.374 4.374 8 H 0.054 0.946 9 N -0.386 5.386 10 C 0.057 3.943 11 H 0.034 0.966 12 C -0.159 4.159 13 C -0.167 4.167 14 C -0.023 4.023 15 N -0.332 5.332 16 C 0.276 3.724 17 O -0.472 6.472 18 C -0.041 4.041 19 N -0.229 5.229 20 C 0.083 3.917 21 C -0.311 4.311 22 C 0.255 3.745 23 O -0.237 6.237 24 N -0.420 5.420 25 C 0.350 3.650 26 O -0.472 6.472 27 C -0.018 4.018 28 H 0.069 0.931 29 H 0.207 0.793 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.213 0.787 37 H 0.151 0.849 38 H 0.257 0.743 39 H 0.220 0.780 40 H 0.288 0.712 41 H 0.099 0.901 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 24.967 -16.419 -10.991 31.839 hybrid contribution -1.255 1.083 0.367 1.697 sum 23.713 -15.337 -10.624 30.172 Atomic orbital electron populations 1.69940 1.07666 1.27049 1.59008 1.25711 0.96253 1.02001 1.01804 0.85212 0.78748 0.78146 0.78397 1.19927 1.22221 1.16521 1.18921 0.82940 0.92935 1.42563 0.94630 1.42589 1.02152 1.03779 1.90062 1.20662 0.93362 0.86821 0.93456 0.96563 1.21804 0.93352 0.99428 1.01286 1.21924 1.02220 0.95438 0.97077 1.22309 0.81758 1.05175 0.93055 1.48279 1.19463 1.10012 1.55399 1.21520 0.87285 0.85475 0.78149 1.90765 1.24182 1.84508 1.47772 1.22188 0.96106 0.81902 1.03871 1.45964 1.40971 1.26108 1.09849 1.23330 0.92613 0.94255 0.81529 1.21114 1.06182 0.99331 1.04438 1.20890 0.82619 0.84038 0.86924 1.84975 1.60077 1.38835 1.39778 1.69482 1.34155 1.25923 1.12437 1.17491 0.79279 0.80885 0.87348 1.90955 1.66448 1.74949 1.14861 1.22149 0.94149 0.86190 0.99320 0.93147 0.79305 0.91887 0.89571 0.86235 0.93171 0.87350 0.86041 0.78672 0.84897 0.74341 0.77966 0.71161 0.90120 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.30 13.97 21.65 0.30 -65.99 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 45.64 27.73 68.60 1.90 47.54 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.24 -9.85 6.52 99.48 0.65 -9.20 16 7 C -0.24 -14.72 10.41 84.03 0.88 -13.84 16 8 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 9 N -0.74 -35.26 4.93 -322.58 -1.59 -36.85 16 10 C 0.17 6.46 2.92 45.07 0.13 6.59 16 11 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 12 C -0.12 -3.07 5.35 30.62 0.16 -2.91 16 13 C -0.13 -2.15 6.08 30.67 0.19 -1.96 16 14 C 0.10 1.24 6.34 86.36 0.55 1.79 16 15 N -0.60 -15.34 2.97 -818.91 -2.43 -17.78 16 16 C 0.49 13.81 7.77 87.66 0.68 14.50 16 17 O -0.59 -24.51 15.84 -3.06 -0.05 -24.56 16 18 C 0.08 1.35 4.18 85.63 0.36 1.71 16 19 N -0.51 -10.81 2.08 -661.80 -1.38 -12.19 16 20 C 0.22 2.35 10.40 83.40 0.87 3.22 16 21 C -0.29 -3.41 10.03 22.26 0.22 -3.19 16 22 C 0.45 8.90 7.91 85.21 0.67 9.57 16 23 O -0.44 -6.12 13.55 -84.34 -1.14 -7.26 16 24 N -0.66 -19.64 10.40 -438.80 -4.56 -24.21 16 25 C 0.65 21.27 8.34 179.58 1.50 22.77 16 26 O -0.59 -25.14 16.72 -5.22 -0.09 -25.23 16 27 C 0.11 3.89 6.02 86.36 0.52 4.41 16 28 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 29 H 0.37 16.11 5.66 -92.71 -0.52 15.58 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 0.58 5.93 -2.39 -0.01 0.57 16 36 H 0.20 0.17 7.83 -2.39 -0.02 0.15 16 37 H 0.13 2.23 6.92 -2.39 -0.02 2.22 16 38 H 0.24 -0.37 8.06 -2.91 -0.02 -0.39 16 39 H 0.20 0.82 8.06 -2.91 -0.02 0.79 16 40 H 0.43 3.57 8.98 -74.06 -0.66 2.91 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16 Total: -1.00 -108.39 351.93 -2.02 -110.41 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -0.17 Total: 17.06 kcal Atomic # 6 Polarization: 31.87 SS G_CDS: 7.19 Total: 39.06 kcal Atomic # 7 Polarization: -147.35 SS G_CDS: -9.66 Total: -157.01 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -1.28 Total: -57.06 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Total: -108.39 -2.02 -110.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999624108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.793 kcal (2) G-P(sol) polarization free energy of solvation -108.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds