Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47174 * 239.99733 * 3 2 1 5 5 H 1.48506 * 109.46755 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47190 * 119.99395 * 3 2 1 7 7 C 1.38813 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00016 * 195.09293 * 7 2 1 9 9 N 1.36933 * 119.99905 * 15.10186 * 7 2 1 10 10 C 1.48366 * 120.34641 * 25.39206 * 9 7 2 11 11 C 1.53894 * 107.40833 * 133.15289 * 10 9 7 12 12 H 1.08993 * 112.09450 * 181.87548 * 11 10 9 13 13 C 1.54547 * 107.82736 * 305.82872 * 11 10 9 14 14 C 1.54278 * 104.84855 * 89.68219 * 13 11 10 15 15 C 1.54543 * 104.84987 * 0.02562 * 14 13 11 16 16 H 1.08998 * 112.18215 * 147.01957 * 15 14 13 17 17 C 1.47161 * 120.70766 * 205.23663 * 9 7 2 18 18 N 1.48307 * 107.74899 * 57.94130 * 11 10 9 19 19 C 1.34777 * 128.07663 * 106.45727 * 18 11 10 20 20 O 1.21287 * 119.99735 * 359.97438 * 19 18 11 21 21 C 1.50697 * 119.99971 * 179.97438 * 19 18 11 22 22 N 1.46497 * 109.46884 * 179.97438 * 21 19 18 23 23 C 1.47315 * 126.69263 * 89.99947 * 22 21 19 24 24 C 1.51579 * 103.59744 * 179.97438 * 23 22 21 25 25 O 1.21234 * 127.15887 * 180.02562 * 24 23 22 26 26 N 1.34771 * 105.68275 * 0.02562 * 24 23 22 27 27 C 1.33793 * 111.64554 * 359.76065 * 26 24 23 28 28 O 1.21537 * 123.77335 * 180.24377 * 27 26 24 29 29 H 0.96999 * 120.00162 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.08596 * 13.69830 * 10 9 7 31 31 H 1.09000 * 110.02601 * 252.56675 * 10 9 7 32 32 H 1.09002 * 110.36347 * 208.52519 * 13 11 10 33 33 H 1.09003 * 110.36832 * 330.73245 * 13 11 10 34 34 H 1.09005 * 110.36511 * 118.84404 * 14 13 11 35 35 H 1.09004 * 110.36781 * 241.04722 * 14 13 11 36 36 H 1.09000 * 109.75246 * 107.61084 * 17 9 7 37 37 H 1.09002 * 109.79406 * 346.90525 * 17 9 7 38 38 H 1.08998 * 109.47183 * 299.99538 * 21 19 18 39 39 H 1.08999 * 109.47087 * 60.00201 * 21 19 18 40 40 H 1.08998 * 110.59961 * 298.49640 * 23 22 21 41 41 H 1.09007 * 110.59664 * 61.28164 * 23 22 21 42 42 H 0.97003 * 124.17719 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0624 -1.2181 0.2441 9 7 1.3611 -2.3677 -0.3079 10 6 0.1452 -2.3462 -1.1578 11 6 0.3073 -3.4466 -2.2214 12 1 -0.5352 -3.4764 -2.9122 13 6 1.6499 -3.2076 -2.9486 14 6 2.6892 -4.0026 -2.1314 15 6 1.8803 -4.6503 -0.9849 16 1 2.2814 -5.6217 -0.6960 17 6 1.8572 -3.6594 0.1930 18 7 0.4973 -4.7356 -1.5129 19 6 -0.3820 -5.7484 -1.3799 20 8 -1.4855 -5.6625 -1.8759 21 6 0.0060 -6.9875 -0.6150 22 7 -1.1143 -7.9315 -0.6141 23 6 -1.3783 -8.9852 -1.6091 24 6 -2.6501 -9.6392 -1.1067 25 8 -3.2463 -10.5657 -1.6127 26 7 -2.9801 -8.9766 0.0194 27 6 -2.1000 -8.0083 0.2983 28 8 -2.1831 -7.2778 1.2661 29 1 -0.4850 0.8400 -0.0004 30 1 0.0455 -1.3758 -1.6441 31 1 -0.7378 -2.5476 -0.5513 32 1 1.6007 -3.5856 -3.9698 33 1 1.8972 -2.1460 -2.9494 34 1 3.1511 -4.7715 -2.7507 35 1 3.4496 -3.3324 -1.7302 36 1 1.1938 -4.0311 0.9739 37 1 2.8642 -3.5383 0.5923 38 1 0.8715 -7.4507 -1.0886 39 1 0.2543 -6.7179 0.4115 40 1 -1.5350 -8.5501 -2.5961 41 1 -0.5586 -9.7034 -1.6338 42 1 -3.7576 -9.1793 0.5630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018074030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = -23.795077 kcal Electronic energy + Delta-G solvation = -28340.991021 eV Core-core repulsion = 24323.617163 eV Total energy + Delta-G solvation = -4017.373858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40271 -40.17830 -38.84845 -37.86542 -36.26802 -34.58506 -34.11748 -31.51880 -31.23427 -30.35792 -29.30398 -27.13156 -26.14495 -23.72443 -23.24188 -22.53931 -21.91497 -20.64271 -20.04881 -18.52164 -18.23222 -17.76197 -16.90268 -16.80175 -16.10528 -15.92539 -15.58110 -15.28488 -14.70978 -14.67921 -14.50438 -14.22930 -14.22046 -13.56424 -13.45649 -13.13146 -12.93984 -12.82147 -12.23447 -12.16684 -11.95175 -11.53530 -11.20781 -11.16907 -10.87340 -10.63667 -10.56092 -10.55106 -10.49081 -10.38667 -10.08369 -10.01682 -9.85916 -9.72628 -9.01934 -8.58051 -8.30979 -6.76532 -5.83322 -3.26552 1.38296 1.92796 2.72504 2.82914 2.85868 3.33826 3.35366 3.40577 3.41436 3.81101 4.42045 4.48214 4.55312 4.74094 4.93646 4.98585 5.08995 5.22223 5.27649 5.33840 5.45014 5.48862 5.70575 5.72139 5.79211 5.95899 6.04609 6.12348 6.25826 6.33366 6.37889 6.52733 6.56997 6.70888 6.80745 6.89406 7.11546 7.25634 7.53987 7.70052 7.91739 7.99265 8.30963 8.41182 9.09937 9.73877 10.29994 11.24781 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025380 B = 0.003281 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.980883 B = 8532.155450 C = 8918.839950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.174 3.826 11 C 0.106 3.894 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.110 4.110 15 C 0.103 3.897 16 H 0.087 0.913 17 C 0.137 3.863 18 N -0.602 5.602 19 C 0.509 3.491 20 O -0.545 6.545 21 C 0.138 3.862 22 N -0.607 5.607 23 C 0.064 3.936 24 C 0.531 3.469 25 O -0.477 6.477 26 N -0.678 5.678 27 C 0.705 3.295 28 O -0.533 6.533 29 H 0.256 0.744 30 H 0.095 0.905 31 H 0.026 0.974 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.020 0.980 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 -17.323 -4.537 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.048 3.952 11 C 0.002 3.998 12 H 0.104 0.896 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.002 4.002 16 H 0.105 0.895 17 C 0.010 3.990 18 N -0.336 5.336 19 C 0.295 3.705 20 O -0.423 6.423 21 C 0.013 3.987 22 N -0.346 5.346 23 C -0.062 4.062 24 C 0.317 3.683 25 O -0.347 6.347 26 N -0.348 5.348 27 C 0.406 3.594 28 O -0.405 6.405 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.712 -17.185 -4.573 17.989 hybrid contribution -0.019 0.901 0.335 0.962 sum 2.694 -16.284 -4.238 17.041 Atomic orbital electron populations 1.70001 1.05212 1.25749 1.53869 1.25032 0.95308 0.98352 1.00899 0.86350 0.78807 0.83394 0.78056 1.21011 1.21682 1.20959 1.19123 0.91980 0.84246 1.42974 0.91388 1.44342 1.30013 1.01000 1.55983 1.21524 0.88316 0.95660 0.89681 1.23230 0.97534 0.83415 0.95580 0.89582 1.22319 0.94185 1.01887 0.96674 1.22288 0.97982 0.98645 0.95878 1.23083 0.81292 0.99073 0.96727 0.89495 1.21455 0.98349 0.87108 0.92124 1.49204 1.14421 1.16804 1.53136 1.20483 0.84627 0.84020 0.81328 1.90693 1.20961 1.80934 1.49742 1.21139 0.86536 0.87272 1.03722 1.46948 1.27083 1.34796 1.25751 1.22523 0.96885 0.90970 0.95810 1.20774 0.86146 0.81515 0.79846 1.90849 1.57319 1.26122 1.60444 1.44308 1.28621 1.34069 1.27820 1.15769 0.79867 0.80456 0.83309 1.91069 1.75464 1.44498 1.29459 0.93417 0.88683 0.95590 0.93137 0.89478 0.92850 0.89815 0.96188 0.91694 0.86642 0.86161 0.85668 0.85774 0.72572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.00 55.49 0.61 -24.93 16 2 C 0.00 0.08 4.99 -17.43 -0.09 -0.01 16 3 Si 0.90 20.80 29.58 -169.99 -5.03 15.77 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.41 9.66 -15.06 -0.15 -6.56 16 8 H 0.07 1.66 7.86 -52.48 -0.41 1.25 16 9 N -0.59 -13.48 2.31 -170.06 -0.39 -13.87 16 10 C 0.17 4.02 4.64 -2.55 -0.01 4.01 16 11 C 0.11 1.97 4.07 -65.66 -0.27 1.70 16 12 H 0.09 1.64 7.93 -51.93 -0.41 1.23 16 13 C -0.11 -1.79 6.18 -25.25 -0.16 -1.95 16 14 C -0.11 -1.52 6.18 -25.25 -0.16 -1.68 16 15 C 0.10 1.46 3.97 -65.65 -0.26 1.20 16 16 H 0.09 0.88 7.46 -51.93 -0.39 0.49 16 17 C 0.14 2.52 6.03 -3.19 -0.02 2.50 16 18 N -0.60 -9.88 2.75 -153.02 -0.42 -10.30 16 19 C 0.51 8.20 7.99 -10.99 -0.09 8.11 16 20 O -0.55 -10.85 16.74 5.55 0.09 -10.76 16 21 C 0.14 1.53 5.63 -5.20 -0.03 1.50 16 22 N -0.61 -6.81 2.51 -181.40 -0.45 -7.26 16 23 C 0.06 0.50 7.66 -4.32 -0.03 0.47 16 24 C 0.53 5.21 8.81 -10.56 -0.09 5.12 16 25 O -0.48 -5.81 18.02 5.60 0.10 -5.71 16 26 N -0.68 -6.99 5.70 -15.79 -0.09 -7.08 16 27 C 0.71 9.49 8.68 -88.02 -0.76 8.72 16 28 O -0.53 -9.44 17.71 5.33 0.09 -9.35 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.10 2.42 6.26 -51.93 -0.32 2.10 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.57 7.83 -51.93 -0.41 1.16 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.25 7.84 -51.93 -0.41 0.84 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 38 H 0.12 0.76 8.05 -51.93 -0.42 0.34 16 39 H 0.12 1.36 8.02 -51.93 -0.42 0.94 16 40 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.12 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.43 3.61 8.96 -40.82 -0.37 3.24 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -35.26 347.48 -8.00 -43.26 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.64 Total: 1.86 kcal Atomic # 6 Polarization: 25.25 SS G_CDS: -2.11 Total: 23.14 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.75 Total: -63.45 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.29 Total: -25.82 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.26 -8.00 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018074030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.460 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds