Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47174 * 239.99733 * 3 2 1 5 5 H 1.48506 * 109.46755 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47190 * 119.99395 * 3 2 1 7 7 C 1.38813 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00016 * 195.09293 * 7 2 1 9 9 N 1.36933 * 119.99905 * 15.10186 * 7 2 1 10 10 C 1.48366 * 120.34641 * 25.39206 * 9 7 2 11 11 C 1.53894 * 107.40833 * 133.15289 * 10 9 7 12 12 H 1.08993 * 112.09450 * 181.87548 * 11 10 9 13 13 C 1.54547 * 107.82736 * 305.82872 * 11 10 9 14 14 C 1.54278 * 104.84855 * 89.68219 * 13 11 10 15 15 C 1.54543 * 104.84987 * 0.02562 * 14 13 11 16 16 H 1.08998 * 112.18215 * 147.01957 * 15 14 13 17 17 C 1.47161 * 120.70766 * 205.23663 * 9 7 2 18 18 N 1.48307 * 107.74899 * 57.94130 * 11 10 9 19 19 C 1.34777 * 128.07663 * 106.45727 * 18 11 10 20 20 O 1.21287 * 119.99735 * 359.97438 * 19 18 11 21 21 C 1.50697 * 119.99971 * 179.97438 * 19 18 11 22 22 N 1.46497 * 109.46884 * 179.97438 * 21 19 18 23 23 C 1.47315 * 126.69263 * 89.99947 * 22 21 19 24 24 C 1.51579 * 103.59744 * 179.97438 * 23 22 21 25 25 O 1.21234 * 127.15887 * 180.02562 * 24 23 22 26 26 N 1.34771 * 105.68275 * 0.02562 * 24 23 22 27 27 C 1.33793 * 111.64554 * 359.76065 * 26 24 23 28 28 O 1.21537 * 123.77335 * 180.24377 * 27 26 24 29 29 H 0.96999 * 120.00162 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.08596 * 13.69830 * 10 9 7 31 31 H 1.09000 * 110.02601 * 252.56675 * 10 9 7 32 32 H 1.09002 * 110.36347 * 208.52519 * 13 11 10 33 33 H 1.09003 * 110.36832 * 330.73245 * 13 11 10 34 34 H 1.09005 * 110.36511 * 118.84404 * 14 13 11 35 35 H 1.09004 * 110.36781 * 241.04722 * 14 13 11 36 36 H 1.09000 * 109.75246 * 107.61084 * 17 9 7 37 37 H 1.09002 * 109.79406 * 346.90525 * 17 9 7 38 38 H 1.08998 * 109.47183 * 299.99538 * 21 19 18 39 39 H 1.08999 * 109.47087 * 60.00201 * 21 19 18 40 40 H 1.08998 * 110.59961 * 298.49640 * 23 22 21 41 41 H 1.09007 * 110.59664 * 61.28164 * 23 22 21 42 42 H 0.97003 * 124.17719 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0624 -1.2181 0.2441 9 7 1.3611 -2.3677 -0.3079 10 6 0.1452 -2.3462 -1.1578 11 6 0.3073 -3.4466 -2.2214 12 1 -0.5352 -3.4764 -2.9122 13 6 1.6499 -3.2076 -2.9486 14 6 2.6892 -4.0026 -2.1314 15 6 1.8803 -4.6503 -0.9849 16 1 2.2814 -5.6217 -0.6960 17 6 1.8572 -3.6594 0.1930 18 7 0.4973 -4.7356 -1.5129 19 6 -0.3820 -5.7484 -1.3799 20 8 -1.4855 -5.6625 -1.8759 21 6 0.0060 -6.9875 -0.6150 22 7 -1.1143 -7.9315 -0.6141 23 6 -1.3783 -8.9852 -1.6091 24 6 -2.6501 -9.6392 -1.1067 25 8 -3.2463 -10.5657 -1.6127 26 7 -2.9801 -8.9766 0.0194 27 6 -2.1000 -8.0083 0.2983 28 8 -2.1831 -7.2778 1.2661 29 1 -0.4850 0.8400 -0.0004 30 1 0.0455 -1.3758 -1.6441 31 1 -0.7378 -2.5476 -0.5513 32 1 1.6007 -3.5856 -3.9698 33 1 1.8972 -2.1460 -2.9494 34 1 3.1511 -4.7715 -2.7507 35 1 3.4496 -3.3324 -1.7302 36 1 1.1938 -4.0311 0.9739 37 1 2.8642 -3.5383 0.5923 38 1 0.8715 -7.4507 -1.0886 39 1 0.2543 -6.7179 0.4115 40 1 -1.5350 -8.5501 -2.5961 41 1 -0.5586 -9.7034 -1.6338 42 1 -3.7576 -9.1793 0.5630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018074030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = -50.847449 kcal Electronic energy + Delta-G solvation = -28342.164099 eV Core-core repulsion = 24323.617163 eV Total energy + Delta-G solvation = -4018.546937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.28847 -41.51655 -39.82859 -39.19641 -37.30751 -35.88983 -35.50075 -33.01981 -32.74384 -31.89709 -30.19561 -28.23988 -27.70543 -25.22170 -24.78350 -23.44892 -23.06375 -21.92038 -21.31212 -19.79396 -19.25711 -19.07773 -18.07966 -17.71163 -17.57560 -16.94019 -16.79533 -16.67773 -16.20822 -15.87499 -15.72778 -15.28410 -15.26892 -15.06478 -14.78603 -14.44142 -14.28831 -13.98798 -13.64395 -13.44277 -13.27911 -13.01647 -12.83946 -12.62807 -12.27819 -12.19825 -12.09839 -12.02324 -11.70603 -11.54609 -11.52014 -11.44616 -11.21962 -11.07696 -10.57465 -10.03514 -9.78124 -8.66143 -7.83191 -5.28852 0.54452 1.06317 1.49189 1.50866 1.57572 1.59528 1.84383 1.97545 2.22583 2.53303 3.04495 3.32050 3.44009 3.56670 3.74665 3.90310 4.03287 4.18459 4.25196 4.26352 4.33765 4.36166 4.45271 4.62359 4.65202 4.74178 4.90278 4.91873 5.01747 5.08475 5.16020 5.17547 5.22244 5.31480 5.44473 5.58448 5.66765 5.69770 5.91334 6.31062 6.34939 6.73248 6.97274 7.11295 7.15882 7.83126 8.36830 9.22818 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025380 B = 0.003281 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.980883 B = 8532.155450 C = 8918.839950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.305 1.305 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.188 3.812 11 C 0.110 3.890 12 H 0.072 0.928 13 C -0.105 4.105 14 C -0.102 4.102 15 C 0.116 3.884 16 H 0.151 0.849 17 C 0.126 3.874 18 N -0.604 5.604 19 C 0.501 3.499 20 O -0.593 6.593 21 C 0.145 3.855 22 N -0.605 5.605 23 C 0.071 3.929 24 C 0.534 3.466 25 O -0.501 6.501 26 N -0.673 5.673 27 C 0.699 3.301 28 O -0.587 6.587 29 H 0.245 0.755 30 H 0.060 0.940 31 H -0.032 1.032 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.001 0.999 37 H 0.084 0.916 38 H 0.181 0.819 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.177 0.823 42 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -20.405 -5.735 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.232 1.232 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.327 5.327 10 C 0.062 3.938 11 C 0.005 3.995 12 H 0.090 0.910 13 C -0.144 4.144 14 C -0.140 4.140 15 C 0.012 3.988 16 H 0.168 0.832 17 C 0.000 4.000 18 N -0.337 5.337 19 C 0.290 3.710 20 O -0.474 6.474 21 C 0.020 3.980 22 N -0.342 5.342 23 C -0.054 4.054 24 C 0.322 3.678 25 O -0.373 6.373 26 N -0.343 5.343 27 C 0.400 3.600 28 O -0.463 6.463 29 H 0.054 0.946 30 H 0.078 0.922 31 H -0.014 1.014 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.019 0.981 37 H 0.102 0.898 38 H 0.198 0.802 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.194 0.806 42 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 6.415 -20.337 -5.791 22.097 hybrid contribution -1.219 1.825 0.744 2.318 sum 5.195 -18.511 -5.047 19.878 Atomic orbital electron populations 1.70217 1.06986 1.25569 1.56650 1.25810 0.95860 1.01676 1.01977 0.85330 0.77307 0.79222 0.78511 1.19791 1.23228 1.20152 1.19575 0.92597 0.85102 1.40424 0.89998 1.44566 1.29392 1.02384 1.56315 1.21101 0.86762 0.95944 0.90031 1.22836 0.99040 0.83504 0.94108 0.91028 1.22225 0.92958 1.00897 0.98272 1.22308 0.96804 0.99240 0.95642 1.23195 0.80167 1.00734 0.94682 0.83158 1.21763 0.98430 0.85957 0.93806 1.49293 1.15667 1.15804 1.52933 1.21586 0.83657 0.85203 0.80576 1.90676 1.22938 1.82083 1.51655 1.21378 0.88006 0.85230 1.03360 1.47108 1.26397 1.35001 1.25657 1.22829 0.97168 0.90667 0.94690 1.21104 0.86568 0.80923 0.79158 1.90850 1.58269 1.27294 1.60894 1.44276 1.28364 1.33427 1.28217 1.16040 0.80496 0.80290 0.83177 1.91032 1.76810 1.46611 1.31875 0.94559 0.92182 1.01356 0.90467 0.92339 0.88272 0.90686 0.98131 0.89794 0.80189 0.86079 0.84873 0.80605 0.72000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.93 11.00 21.65 0.24 -56.70 16 2 C -0.06 -3.22 4.99 84.86 0.42 -2.79 16 3 Si 0.97 43.84 29.58 68.60 2.03 45.87 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.31 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.25 -12.59 9.66 84.03 0.81 -11.78 16 8 H 0.08 3.89 7.86 -2.91 -0.02 3.87 16 9 N -0.60 -28.01 2.31 -691.94 -1.60 -29.61 16 10 C 0.19 9.26 4.64 86.32 0.40 9.66 16 11 C 0.11 4.14 4.07 45.47 0.19 4.32 16 12 H 0.07 2.86 7.93 -2.39 -0.02 2.84 16 13 C -0.11 -3.16 6.18 31.55 0.20 -2.96 16 14 C -0.10 -2.34 6.18 31.55 0.19 -2.15 16 15 C 0.12 2.77 3.97 45.49 0.18 2.95 16 16 H 0.15 1.85 7.46 -2.39 -0.02 1.83 16 17 C 0.13 4.42 6.03 86.57 0.52 4.94 16 18 N -0.60 -18.57 2.75 -756.43 -2.08 -20.65 16 19 C 0.50 15.07 7.99 87.66 0.70 15.77 16 20 O -0.59 -23.48 16.74 -3.05 -0.05 -23.53 16 21 C 0.14 2.56 5.63 85.63 0.48 3.05 16 22 N -0.60 -11.63 2.51 -846.24 -2.12 -13.76 16 23 C 0.07 0.81 7.66 85.76 0.66 1.47 16 24 C 0.53 9.33 8.81 87.94 0.77 10.11 16 25 O -0.50 -11.33 18.02 -2.89 -0.05 -11.38 16 26 N -0.67 -13.28 5.70 -441.12 -2.52 -15.80 16 27 C 0.70 18.14 8.68 179.44 1.56 19.70 16 28 O -0.59 -21.16 17.71 -3.83 -0.07 -21.23 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.06 3.33 6.26 -2.39 -0.01 3.32 16 31 H -0.03 -1.87 8.14 -2.39 -0.02 -1.89 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 2.09 7.83 -2.39 -0.02 2.07 16 34 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.07 1.92 7.84 -2.38 -0.02 1.90 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.08 2.61 7.96 -2.39 -0.02 2.59 16 38 H 0.18 0.90 8.05 -2.39 -0.02 0.88 16 39 H 0.12 2.27 8.02 -2.39 -0.02 2.25 16 40 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.18 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.44 7.28 8.96 -92.71 -0.83 6.45 16 Total: -1.00 -86.51 347.48 1.09 -85.42 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.23 Total: 9.08 kcal Atomic # 6 Polarization: 45.20 SS G_CDS: 7.08 Total: 52.28 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -8.08 Total: -136.50 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -0.17 Total: -56.14 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -86.51 1.09 -85.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018074030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.572 kcal (2) G-P(sol) polarization free energy of solvation -86.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds