Wall clock time and date at job start Fri Apr 10 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46973 * 274.98687 * 3 2 1 5 5 H 1.48500 * 109.47017 * 34.98739 * 3 2 1 6 6 H 1.48499 * 109.46841 * 154.98624 * 3 2 1 7 7 C 1.38814 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99440 * 185.06212 * 7 2 1 9 9 N 1.36933 * 119.99714 * 5.06241 * 7 2 1 10 10 C 1.47582 * 134.49000 * 173.48110 * 9 7 2 11 11 C 1.53941 * 86.11759 * 155.35970 * 10 9 7 12 12 C 1.53003 * 113.73954 * 269.15700 * 11 10 9 13 13 N 1.46508 * 109.46970 * 183.07520 * 12 11 10 14 14 C 1.34773 * 119.99872 * 179.97438 * 13 12 11 15 15 O 1.21275 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99893 * 179.97438 * 14 13 12 17 17 C 1.53968 * 113.58298 * 277.68925 * 16 14 13 18 18 C 1.52768 * 86.77584 * 220.72511 * 17 16 14 19 19 C 1.52771 * 88.12392 * 24.86991 * 18 17 16 20 20 N 1.46298 * 116.12966 * 143.20015 * 18 17 16 21 21 C 1.34873 * 106.11091 * 129.26064 * 20 18 17 22 22 O 1.21540 * 123.79117 * 180.02562 * 21 20 18 23 23 N 1.33951 * 112.41556 * 359.97438 * 21 20 18 24 24 C 1.35102 * 111.59392 * 359.97438 * 23 21 20 25 25 O 1.21231 * 127.40566 * 179.97438 * 24 23 21 26 26 C 1.47808 * 134.45725 * 353.35046 * 9 7 2 27 27 H 0.96995 * 119.99775 * 0.02562 * 1 2 3 28 28 H 1.08997 * 113.76639 * 41.05637 * 10 9 7 29 29 H 1.08998 * 113.76570 * 269.66126 * 10 9 7 30 30 H 1.09000 * 113.74374 * 137.95539 * 11 10 9 31 31 H 1.08997 * 109.47105 * 303.06880 * 12 11 10 32 32 H 1.08993 * 109.47283 * 63.07637 * 12 11 10 33 33 H 0.96998 * 119.99406 * 359.97438 * 13 12 11 34 34 H 1.08996 * 112.82588 * 48.89271 * 16 14 13 35 35 H 1.08998 * 113.66848 * 335.19397 * 17 16 14 36 36 H 1.09002 * 113.66354 * 106.25496 * 17 16 14 37 37 H 1.09003 * 113.66293 * 220.65876 * 19 18 17 38 38 H 1.08994 * 113.74710 * 89.61534 * 19 18 17 39 39 H 0.96995 * 126.93737 * 309.26618 * 20 18 17 40 40 H 0.97000 * 124.20500 * 179.97438 * 23 21 20 41 41 H 1.09004 * 113.77216 * 90.38247 * 26 9 7 42 42 H 1.09003 * 113.83955 * 318.91224 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7288 -3.7985 -0.2549 11 6 0.3712 -4.1416 0.3846 12 6 0.4226 -4.2683 1.9085 13 7 -0.8951 -4.6666 2.4101 14 6 -1.0883 -4.8406 3.7325 15 8 -0.1716 -4.6670 4.5073 16 6 -2.4438 -5.2498 4.2485 17 6 -3.4235 -4.0727 4.4074 18 6 -3.8675 -4.7308 5.7126 19 6 -2.4988 -5.4061 5.7792 20 7 -4.1925 -3.8239 6.8135 21 6 -5.4060 -4.2024 7.2645 22 8 -5.9854 -3.6581 8.1839 23 7 -5.9012 -5.2448 6.5845 24 6 -5.0543 -5.6533 5.6144 25 8 -5.2144 -6.5670 4.8338 26 6 -0.1000 -2.7609 -0.1071 27 1 -0.4849 0.8400 -0.0004 28 1 2.5862 -4.0806 0.3562 29 1 1.8198 -4.1205 -1.2922 30 1 -0.1410 -4.9763 -0.0942 31 1 1.1598 -5.0217 2.1858 32 1 0.7021 -3.3088 2.3436 33 1 -1.6283 -4.8051 1.7903 34 1 -2.8635 -6.0981 3.7080 35 1 -2.9318 -3.1101 4.5481 36 1 -4.2016 -4.0450 3.6446 37 1 -2.5384 -6.4434 6.1119 38 1 -1.7456 -4.8205 6.3061 39 1 -3.6458 -3.0972 7.1509 40 1 -6.7611 -5.6554 6.7661 41 1 -0.5474 -2.7777 -1.1009 42 1 -0.7001 -2.2163 0.6219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032043081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:01 Heat of formation + Delta-G solvation = -1.130292 kcal Electronic energy + Delta-G solvation = -26916.303356 eV Core-core repulsion = 22899.912317 eV Total energy + Delta-G solvation = -4016.391039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.09312 -40.17011 -39.07767 -38.31050 -37.49506 -35.98473 -34.29010 -33.31124 -32.17481 -28.92062 -27.24986 -26.47275 -25.67785 -24.84221 -23.67582 -23.17640 -22.25404 -20.81653 -19.69942 -18.92439 -18.47371 -17.26651 -17.01152 -16.92480 -16.79841 -16.42490 -15.94539 -15.78017 -15.54796 -14.96004 -14.66472 -14.58482 -14.43344 -13.81406 -13.46634 -13.18144 -12.96387 -12.79193 -12.52581 -12.38032 -11.97572 -11.54572 -11.29236 -11.15618 -11.11192 -11.04226 -10.81233 -10.75310 -10.71107 -10.51830 -9.97671 -9.83576 -9.79869 -9.66789 -9.45008 -8.81424 -8.77254 -6.89086 -5.80655 -3.11317 1.07058 2.00952 2.58503 2.62247 2.71408 3.25272 3.37931 3.43604 3.45124 3.58814 3.72609 3.92056 4.18818 4.44647 4.62293 4.94712 4.99384 5.10658 5.17040 5.23449 5.29612 5.31821 5.36114 5.44852 5.56603 5.59039 5.77378 5.95022 6.09039 6.29738 6.35318 6.48061 6.49581 6.58675 6.61600 6.74588 6.93431 7.16317 7.24733 7.53663 7.67849 7.73008 7.95488 8.34355 9.02508 9.68865 10.58033 11.37059 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.002724 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.468258 B =10277.608185 C =11213.401911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.611 5.611 10 C 0.126 3.874 11 C -0.157 4.157 12 C 0.147 3.853 13 N -0.717 5.717 14 C 0.522 3.478 15 O -0.541 6.541 16 C -0.134 4.134 17 C -0.103 4.103 18 C 0.081 3.919 19 C -0.095 4.095 20 N -0.706 5.706 21 C 0.705 3.295 22 O -0.543 6.543 23 N -0.680 5.680 24 C 0.552 3.448 25 O -0.455 6.455 26 C 0.169 3.831 27 H 0.253 0.747 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.400 0.600 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.444 0.556 40 H 0.433 0.567 41 H 0.028 0.972 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -13.735 9.964 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.338 5.338 10 C 0.000 4.000 11 C -0.176 4.176 12 C 0.024 3.976 13 N -0.367 5.367 14 C 0.307 3.693 15 O -0.419 6.419 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.011 4.011 19 C -0.134 4.134 20 N -0.370 5.370 21 C 0.404 3.596 22 O -0.416 6.416 23 N -0.351 5.351 24 C 0.336 3.664 25 O -0.323 6.323 26 C 0.044 3.956 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.234 0.766 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.290 0.710 40 H 0.276 0.724 41 H 0.046 0.954 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.415 -13.428 10.589 20.022 hybrid contribution -0.122 1.053 -0.393 1.130 sum -10.536 -12.375 10.196 19.186 Atomic orbital electron populations 1.69821 1.05023 1.25286 1.56551 1.24793 0.95663 0.97457 1.02387 0.86161 0.78851 0.83696 0.77475 1.21683 1.21726 1.20535 1.19034 0.90804 0.82157 1.43063 0.90261 1.46047 1.02267 1.00692 1.84808 1.22528 0.94223 0.86518 0.96756 1.23469 1.00325 0.99819 0.94030 1.21100 0.82653 1.00857 0.92943 1.46027 1.14318 1.69181 1.07126 1.20052 0.89283 0.77407 0.82519 1.90708 1.43789 1.51269 1.56110 1.22734 0.94510 1.00557 0.97769 1.23046 0.98536 0.98811 0.93832 1.22166 0.95925 0.92081 0.90915 1.22988 0.92512 1.02473 0.95432 1.45426 1.19511 1.36215 1.35847 1.15990 0.82021 0.79891 0.81674 1.91068 1.62975 1.58054 1.29536 1.44397 1.23372 1.33102 1.34267 1.19963 0.83887 0.83206 0.79304 1.90851 1.76973 1.27563 1.36948 1.22281 0.88197 0.87431 0.97695 0.93727 0.93681 0.94545 0.91488 0.92206 0.89980 0.76602 0.85488 0.86871 0.88684 0.89301 0.86214 0.71035 0.72436 0.95421 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 11.51 55.49 0.64 -25.93 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.93 29.56 -169.99 -5.02 16.90 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -15.04 3.58 -177.70 -0.64 -15.67 16 10 C 0.13 2.43 8.51 -2.97 -0.03 2.40 16 11 C -0.16 -2.61 3.99 -89.69 -0.36 -2.97 16 12 C 0.15 2.39 5.42 -4.04 -0.02 2.37 16 13 N -0.72 -9.21 5.56 -60.29 -0.33 -9.54 16 14 C 0.52 6.71 7.35 -10.99 -0.08 6.63 16 15 O -0.54 -9.07 15.89 5.56 0.09 -8.98 16 16 C -0.13 -1.17 3.92 -90.77 -0.36 -1.52 16 17 C -0.10 -0.79 7.18 -26.35 -0.19 -0.98 16 18 C 0.08 0.60 1.62 -133.36 -0.22 0.38 16 19 C -0.10 -0.75 6.96 -26.35 -0.18 -0.94 16 20 N -0.71 -5.16 6.35 -54.09 -0.34 -5.51 16 21 C 0.70 6.44 9.01 -87.57 -0.79 5.65 16 22 O -0.54 -6.90 18.04 5.33 0.10 -6.80 16 23 N -0.68 -4.87 5.73 -15.91 -0.09 -4.96 16 24 C 0.55 4.42 7.92 -10.87 -0.09 4.33 16 25 O -0.46 -4.55 17.62 5.60 0.10 -4.46 16 26 C 0.17 3.68 6.94 -2.84 -0.02 3.66 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.67 7.98 -51.93 -0.41 1.26 16 33 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 34 H 0.13 0.95 7.87 -51.93 -0.41 0.54 16 35 H 0.11 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.12 1.06 7.42 -51.93 -0.39 0.67 16 39 H 0.44 2.66 8.96 -40.82 -0.37 2.30 16 40 H 0.43 2.21 8.96 -40.82 -0.37 1.84 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.69 7.32 -51.93 -0.38 1.31 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -35.28 358.30 -8.28 -43.56 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.59 Total: 3.54 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: -2.58 Total: 12.44 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.77 Total: -61.60 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.28 Total: -20.24 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.28 -8.28 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032043081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.426 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds