Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46973 * 274.98687 * 3 2 1 5 5 H 1.48500 * 109.47017 * 34.98739 * 3 2 1 6 6 H 1.48499 * 109.46841 * 154.98624 * 3 2 1 7 7 C 1.38814 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99440 * 185.06212 * 7 2 1 9 9 N 1.36933 * 119.99714 * 5.06241 * 7 2 1 10 10 C 1.47582 * 134.49000 * 173.48110 * 9 7 2 11 11 C 1.53941 * 86.11759 * 155.35970 * 10 9 7 12 12 C 1.53003 * 113.73954 * 269.15700 * 11 10 9 13 13 N 1.46508 * 109.46970 * 183.07520 * 12 11 10 14 14 C 1.34773 * 119.99872 * 179.97438 * 13 12 11 15 15 O 1.21275 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99893 * 179.97438 * 14 13 12 17 17 C 1.53968 * 113.58298 * 277.68925 * 16 14 13 18 18 C 1.52768 * 86.77584 * 220.72511 * 17 16 14 19 19 C 1.52771 * 88.12392 * 24.86991 * 18 17 16 20 20 N 1.46298 * 116.12966 * 143.20015 * 18 17 16 21 21 C 1.34873 * 106.11091 * 129.26064 * 20 18 17 22 22 O 1.21540 * 123.79117 * 180.02562 * 21 20 18 23 23 N 1.33951 * 112.41556 * 359.97438 * 21 20 18 24 24 C 1.35102 * 111.59392 * 359.97438 * 23 21 20 25 25 O 1.21231 * 127.40566 * 179.97438 * 24 23 21 26 26 C 1.47808 * 134.45725 * 353.35046 * 9 7 2 27 27 H 0.96995 * 119.99775 * 0.02562 * 1 2 3 28 28 H 1.08997 * 113.76639 * 41.05637 * 10 9 7 29 29 H 1.08998 * 113.76570 * 269.66126 * 10 9 7 30 30 H 1.09000 * 113.74374 * 137.95539 * 11 10 9 31 31 H 1.08997 * 109.47105 * 303.06880 * 12 11 10 32 32 H 1.08993 * 109.47283 * 63.07637 * 12 11 10 33 33 H 0.96998 * 119.99406 * 359.97438 * 13 12 11 34 34 H 1.08996 * 112.82588 * 48.89271 * 16 14 13 35 35 H 1.08998 * 113.66848 * 335.19397 * 17 16 14 36 36 H 1.09002 * 113.66354 * 106.25496 * 17 16 14 37 37 H 1.09003 * 113.66293 * 220.65876 * 19 18 17 38 38 H 1.08994 * 113.74710 * 89.61534 * 19 18 17 39 39 H 0.96995 * 126.93737 * 309.26618 * 20 18 17 40 40 H 0.97000 * 124.20500 * 179.97438 * 23 21 20 41 41 H 1.09004 * 113.77216 * 90.38247 * 26 9 7 42 42 H 1.09003 * 113.83955 * 318.91224 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7288 -3.7985 -0.2549 11 6 0.3712 -4.1416 0.3846 12 6 0.4226 -4.2683 1.9085 13 7 -0.8951 -4.6666 2.4101 14 6 -1.0883 -4.8406 3.7325 15 8 -0.1716 -4.6670 4.5073 16 6 -2.4438 -5.2498 4.2485 17 6 -3.4235 -4.0727 4.4074 18 6 -3.8675 -4.7308 5.7126 19 6 -2.4988 -5.4061 5.7792 20 7 -4.1925 -3.8239 6.8135 21 6 -5.4060 -4.2024 7.2645 22 8 -5.9854 -3.6581 8.1839 23 7 -5.9012 -5.2448 6.5845 24 6 -5.0543 -5.6533 5.6144 25 8 -5.2144 -6.5670 4.8338 26 6 -0.1000 -2.7609 -0.1071 27 1 -0.4849 0.8400 -0.0004 28 1 2.5862 -4.0806 0.3562 29 1 1.8198 -4.1205 -1.2922 30 1 -0.1410 -4.9763 -0.0942 31 1 1.1598 -5.0217 2.1858 32 1 0.7021 -3.3088 2.3436 33 1 -1.6283 -4.8051 1.7903 34 1 -2.8635 -6.0981 3.7080 35 1 -2.9318 -3.1101 4.5481 36 1 -4.2016 -4.0450 3.6446 37 1 -2.5384 -6.4434 6.1119 38 1 -1.7456 -4.8205 6.3061 39 1 -3.6458 -3.0972 7.1509 40 1 -6.7611 -5.6554 6.7661 41 1 -0.5474 -2.7777 -1.1009 42 1 -0.7001 -2.2163 0.6219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032043081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = -30.714395 kcal Electronic energy + Delta-G solvation = -26917.586219 eV Core-core repulsion = 22899.912317 eV Total energy + Delta-G solvation = -4017.673902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.78392 -41.14370 -40.02793 -39.62248 -38.43879 -36.77388 -35.59368 -34.16101 -33.95418 -30.50172 -28.50317 -27.16424 -26.89605 -26.48180 -24.71340 -23.85286 -23.80418 -21.75301 -20.78195 -19.91674 -19.46998 -18.69671 -18.14472 -17.71918 -17.64662 -17.22292 -17.05419 -16.90845 -16.59233 -16.46199 -15.75141 -15.72173 -15.52608 -15.35368 -14.65820 -14.45689 -14.14796 -13.78507 -13.65401 -13.39395 -13.26173 -12.91895 -12.82142 -12.75654 -12.50012 -12.22585 -11.95074 -11.90467 -11.78711 -11.52361 -11.50344 -11.44628 -11.26134 -10.86015 -10.71969 -10.49984 -9.98547 -8.85239 -7.90073 -5.19924 0.38080 1.37160 1.45236 1.45833 1.54530 1.64396 1.87669 2.01276 2.26880 2.48760 2.87103 3.04679 3.23878 3.31010 3.48274 3.49141 3.73721 3.89560 4.03235 4.20234 4.31443 4.44204 4.56835 4.59266 4.66829 4.73001 4.82197 4.83138 4.95213 5.03250 5.05457 5.10528 5.14992 5.30241 5.48812 5.59649 5.68038 5.72161 5.81612 5.98603 6.30894 6.65677 6.96170 7.05421 7.32733 7.64088 8.60836 9.27249 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.002724 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.468258 B =10277.608185 C =11213.401911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.645 5.645 10 C 0.123 3.877 11 C -0.120 4.120 12 C 0.159 3.841 13 N -0.709 5.709 14 C 0.522 3.478 15 O -0.584 6.584 16 C -0.125 4.125 17 C -0.101 4.101 18 C 0.089 3.911 19 C -0.093 4.093 20 N -0.697 5.697 21 C 0.707 3.293 22 O -0.580 6.580 23 N -0.669 5.669 24 C 0.560 3.440 25 O -0.470 6.470 26 C 0.166 3.834 27 H 0.247 0.753 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.416 0.584 34 H 0.149 0.851 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.450 0.550 40 H 0.443 0.557 41 H 0.021 0.979 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -15.420 9.648 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.798 3.202 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.372 5.372 10 C -0.003 4.003 11 C -0.139 4.139 12 C 0.034 3.966 13 N -0.360 5.360 14 C 0.309 3.691 15 O -0.464 6.464 16 C -0.146 4.146 17 C -0.140 4.140 18 C -0.003 4.003 19 C -0.132 4.132 20 N -0.360 5.360 21 C 0.407 3.593 22 O -0.456 6.456 23 N -0.340 5.340 24 C 0.345 3.655 25 O -0.339 6.339 26 C 0.041 3.959 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.252 0.748 34 H 0.167 0.833 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.297 0.703 40 H 0.287 0.713 41 H 0.039 0.961 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.793 -15.160 10.245 21.243 hybrid contribution 0.043 1.523 -0.300 1.552 sum -10.750 -13.637 9.945 20.011 Atomic orbital electron populations 1.69980 1.06152 1.25359 1.58210 1.25535 0.96548 1.00452 1.03234 0.85197 0.77975 0.79855 0.77194 1.21555 1.22197 1.19512 1.19377 0.91156 0.83803 1.41759 0.90385 1.46448 1.03888 1.01867 1.85025 1.22771 0.95910 0.83469 0.98108 1.23158 0.98314 0.98310 0.94119 1.20743 0.84644 0.98732 0.92433 1.45904 1.13594 1.68780 1.07745 1.20736 0.90333 0.76152 0.81911 1.90694 1.45615 1.53014 1.57051 1.22756 0.92013 1.01570 0.98268 1.23052 0.98505 0.98096 0.94318 1.22043 0.95637 0.91867 0.90729 1.22973 0.92287 1.03161 0.94768 1.45413 1.18991 1.36136 1.35466 1.16044 0.82137 0.79893 0.81250 1.91050 1.63977 1.59325 1.31245 1.44255 1.23716 1.32416 1.33626 1.19871 0.83823 0.82819 0.78985 1.90856 1.77272 1.28218 1.37527 1.22231 0.86778 0.90171 0.96710 0.94410 0.92852 0.92685 0.86837 0.91327 0.94830 0.74780 0.83290 0.87615 0.87169 0.88024 0.87161 0.70337 0.71260 0.96125 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.07 11.51 21.65 0.25 -55.82 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.97 45.76 29.56 68.60 2.03 47.79 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.23 -12.93 10.70 84.03 0.90 -12.03 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 9 N -0.64 -31.77 3.58 -716.13 -2.57 -34.34 16 10 C 0.12 4.50 8.51 86.48 0.74 5.23 16 11 C -0.12 -3.73 3.99 -10.13 -0.04 -3.77 16 12 C 0.16 4.99 5.42 86.38 0.47 5.46 16 13 N -0.71 -17.06 5.56 -463.06 -2.57 -19.64 16 14 C 0.52 12.76 7.35 87.66 0.64 13.40 16 15 O -0.58 -19.45 15.89 -3.01 -0.05 -19.50 16 16 C -0.12 -1.90 3.92 -10.89 -0.04 -1.94 16 17 C -0.10 -1.36 7.18 30.84 0.22 -1.14 16 18 C 0.09 1.15 1.62 2.71 0.00 1.15 16 19 C -0.09 -1.31 6.96 30.84 0.21 -1.09 16 20 N -0.70 -9.32 6.35 -443.27 -2.82 -12.13 16 21 C 0.71 12.10 9.01 179.28 1.61 13.72 16 22 O -0.58 -14.43 18.04 -3.84 -0.07 -14.50 16 23 N -0.67 -8.42 5.73 -441.21 -2.53 -10.95 16 24 C 0.56 7.70 7.92 87.58 0.69 8.39 16 25 O -0.47 -8.16 17.62 -2.88 -0.05 -8.22 16 26 C 0.17 7.21 6.94 86.44 0.60 7.81 16 27 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 33 H 0.42 7.45 8.47 -92.71 -0.79 6.66 16 34 H 0.15 1.71 7.87 -2.39 -0.02 1.69 16 35 H 0.11 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.11 1.21 8.11 -2.39 -0.02 1.19 16 37 H 0.10 1.21 8.12 -2.39 -0.02 1.19 16 38 H 0.11 1.84 7.42 -2.39 -0.02 1.83 16 39 H 0.45 5.02 8.96 -92.71 -0.83 4.19 16 40 H 0.44 3.79 8.96 -92.71 -0.83 2.96 16 41 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.04 1.98 7.32 -2.39 -0.02 1.96 16 Total: -1.00 -78.00 358.30 -3.24 -81.24 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -1.35 Total: 14.06 kcal Atomic # 6 Polarization: 25.52 SS G_CDS: 6.48 Total: 32.00 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -10.23 Total: -132.87 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.17 Total: -42.22 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.00 -3.24 -81.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032043081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.530 kcal (2) G-P(sol) polarization free energy of solvation -78.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds