Wall clock time and date at job start Fri Apr 10 2020 18:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00000 * 2 1 4 4 H 1.48495 * 109.46858 * 239.99555 * 3 2 1 5 5 H 1.48501 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47049 * 119.99649 * 3 2 1 7 7 C 1.38814 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99534 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00322 * 0.02562 * 7 2 1 10 10 C 1.47873 * 126.94178 * 359.97438 * 9 7 2 11 11 C 1.55486 * 105.16871 * 181.92548 * 10 9 7 12 12 H 1.08999 * 116.03533 * 159.75056 * 11 10 9 13 13 C 1.57436 * 99.68799 * 32.85784 * 11 10 9 14 14 C 1.49288 * 126.94805 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.14782 * 15.83880 * 14 9 7 16 16 C 1.56021 * 104.09130 * 246.69595 * 14 9 7 17 17 N 1.47869 * 105.10438 * 288.76377 * 16 14 9 18 18 C 1.34777 * 126.94196 * 181.98054 * 17 16 14 19 19 O 1.21284 * 119.99279 * 180.02562 * 18 17 16 20 20 C 1.50697 * 120.00266 * 0.02562 * 18 17 16 21 21 C 1.52991 * 109.47144 * 180.02562 * 20 18 17 22 22 C 1.53006 * 109.47225 * 180.02562 * 21 20 18 23 23 H 1.08998 * 110.53022 * 307.82622 * 22 21 20 24 24 N 1.47309 * 110.40116 * 70.94133 * 22 21 20 25 25 C 1.34525 * 106.61823 * 118.81439 * 24 22 21 26 26 O 1.21543 * 123.77085 * 179.85399 * 25 24 22 27 27 N 1.33791 * 112.45685 * 359.58762 * 25 24 22 28 28 C 1.34766 * 111.64749 * 0.26475 * 27 25 24 29 29 O 1.21226 * 127.15862 * 180.02562 * 28 27 25 30 30 H 0.97001 * 119.99775 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.31684 * 300.90823 * 10 9 7 32 32 H 1.08996 * 110.31493 * 62.99879 * 10 9 7 33 33 H 1.08999 * 112.53818 * 191.70531 * 13 11 10 34 34 H 1.09004 * 112.31543 * 64.17292 * 13 11 10 35 35 H 1.08997 * 110.30979 * 169.85737 * 16 14 9 36 36 H 1.09005 * 110.39784 * 47.71737 * 16 14 9 37 37 H 1.09007 * 109.46707 * 60.00040 * 20 18 17 38 38 H 1.09000 * 109.47241 * 300.00161 * 20 18 17 39 39 H 1.08998 * 109.47673 * 59.99731 * 21 20 18 40 40 H 1.09000 * 109.47048 * 300.00114 * 21 20 18 41 41 H 0.97005 * 126.68989 * 298.69915 * 24 22 21 42 42 H 0.97005 * 124.17677 * 180.30951 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1423 -2.5668 0.0005 11 6 -0.3649 -4.1048 0.0510 12 1 -1.3441 -4.4354 0.3972 13 6 0.8840 -4.5251 0.9125 14 6 1.9102 -3.7617 0.0016 15 1 2.9642 -3.8350 0.2695 16 6 1.5091 -4.3463 -1.3882 17 7 0.0523 -4.5841 -1.3004 18 6 -0.7397 -5.1198 -2.2503 19 8 -1.9267 -5.2578 -2.0430 20 6 -0.1504 -5.5474 -3.5697 21 6 -1.2555 -6.1173 -4.4610 22 6 -0.6571 -6.5521 -5.8004 23 1 -0.0787 -5.7406 -6.2421 24 7 0.1737 -7.7558 -5.6251 25 6 -0.3832 -8.7207 -6.3791 26 8 0.0581 -9.8500 -6.4653 27 7 -1.4802 -8.3001 -7.0191 28 6 -1.7481 -7.0072 -6.7493 29 8 -2.6701 -6.3459 -7.1763 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5815 -2.0913 0.8776 32 1 -0.5740 -2.1519 -0.9102 33 1 1.0491 -5.6025 0.9110 34 1 0.8451 -4.1190 1.9233 35 1 2.0352 -5.2833 -1.5706 36 1 1.7286 -3.6295 -2.1796 37 1 0.6086 -6.3109 -3.3982 38 1 0.3042 -4.6869 -4.0605 39 1 -2.0142 -5.3537 -4.6324 40 1 -1.7105 -6.9778 -3.9704 41 1 0.9684 -7.8364 -5.0748 42 1 -2.0170 -8.8572 -7.6044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032772414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:37 Heat of formation + Delta-G solvation = -23.675390 kcal Electronic energy + Delta-G solvation = -27330.671762 eV Core-core repulsion = 23313.303094 eV Total energy + Delta-G solvation = -4017.368668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.68771 -40.16466 -38.95352 -38.15238 -36.69708 -34.85142 -33.69958 -32.51812 -31.52980 -29.28995 -28.66568 -27.83328 -25.27816 -24.24410 -23.32782 -22.84163 -21.68714 -20.43882 -19.91521 -18.72192 -18.47506 -17.37471 -17.31388 -16.90860 -16.43727 -16.08313 -16.03821 -15.63368 -15.59398 -14.69033 -14.60137 -14.47195 -14.06056 -13.64521 -13.37995 -13.20365 -12.69323 -12.29440 -12.17534 -11.91858 -11.72008 -11.43544 -11.37117 -11.24368 -11.08044 -10.92028 -10.84193 -10.74645 -10.68009 -10.59073 -10.33537 -10.15455 -9.89795 -9.70022 -9.54727 -8.76409 -8.09593 -6.99833 -5.82708 -3.17807 1.23221 2.05880 2.64564 2.74907 2.93265 3.26591 3.33220 3.37648 3.39997 3.61784 4.24457 4.36303 4.44829 4.72420 4.86622 4.95390 5.01401 5.10711 5.13248 5.29018 5.36999 5.49212 5.55603 5.63684 5.69465 5.71594 5.83633 5.89155 6.09066 6.20729 6.33662 6.35875 6.40596 6.52285 6.53063 6.60510 7.01378 7.35751 7.41348 7.65508 7.76674 8.00335 8.04564 8.47843 9.03907 9.64946 10.33442 11.29178 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.002775 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.238843 B =10089.177170 C =10474.751319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.098 3.902 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.106 0.894 16 C 0.083 3.917 17 N -0.606 5.606 18 C 0.526 3.474 19 O -0.555 6.555 20 C -0.134 4.134 21 C -0.103 4.103 22 C 0.091 3.909 23 H 0.134 0.866 24 N -0.720 5.720 25 C 0.705 3.295 26 O -0.547 6.547 27 N -0.681 5.681 28 C 0.530 3.470 29 O -0.460 6.460 30 H 0.255 0.745 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.442 0.558 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -14.439 -9.186 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.043 4.043 17 N -0.339 5.339 18 C 0.315 3.685 19 O -0.435 6.435 20 C -0.174 4.174 21 C -0.142 4.142 22 C -0.018 4.018 23 H 0.152 0.848 24 N -0.385 5.385 25 C 0.404 3.596 26 O -0.421 6.421 27 N -0.352 5.352 28 C 0.315 3.685 29 O -0.329 6.329 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.287 0.713 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 1.150 -14.398 -9.389 17.228 hybrid contribution 0.611 0.742 -0.145 0.972 sum 1.761 -13.656 -9.534 16.748 Atomic orbital electron populations 1.69905 1.04960 1.25525 1.56118 1.24827 0.95683 0.97749 1.01894 0.86194 0.78454 0.83131 0.77900 1.21136 1.21605 1.21091 1.18991 0.90366 0.82071 1.44835 0.90196 1.45242 1.01326 0.99278 1.86300 1.21829 0.84706 0.87272 1.01395 1.24324 0.97738 0.97630 0.80740 0.86888 1.24197 0.96698 0.98855 0.99264 1.23164 0.96561 0.86349 0.90807 0.87574 1.23316 0.79830 0.98825 1.02279 1.49248 1.09456 1.59593 1.15608 1.19969 0.86156 0.77602 0.84795 1.90689 1.15364 1.56878 1.80531 1.21575 0.98963 1.02573 0.94250 1.21564 0.98431 1.03340 0.90879 1.22246 0.91547 0.90310 0.97663 0.84815 1.45607 1.31606 1.10930 1.50383 1.15846 0.80032 0.84724 0.78980 1.91066 1.65831 1.18158 1.67062 1.44333 1.28533 1.14923 1.47439 1.20778 0.85638 0.81473 0.80599 1.90876 1.30437 1.59139 1.52400 0.93467 0.92629 0.93448 0.91639 0.89806 0.92829 0.91016 0.89257 0.88328 0.88119 0.89738 0.71326 0.72544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.02 10.56 55.49 0.59 -25.44 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -5.99 10.37 -15.06 -0.16 -6.14 16 8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.60 -13.60 3.02 -156.71 -0.47 -14.08 16 10 C 0.17 3.96 4.75 -1.97 -0.01 3.95 16 11 C 0.10 1.78 5.23 -62.62 -0.33 1.46 16 12 H 0.11 2.03 8.05 -51.93 -0.42 1.62 16 13 C -0.15 -2.37 6.82 -22.13 -0.15 -2.52 16 14 C 0.14 2.38 5.52 -62.59 -0.35 2.04 16 15 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.08 1.23 6.01 -1.67 -0.01 1.22 16 17 N -0.61 -9.95 2.95 -156.85 -0.46 -10.42 16 18 C 0.53 8.25 7.90 -10.99 -0.09 8.17 16 19 O -0.56 -10.67 16.33 5.55 0.09 -10.58 16 20 C -0.13 -1.33 4.92 -27.89 -0.14 -1.46 16 21 C -0.10 -0.96 4.24 -26.73 -0.11 -1.08 16 22 C 0.09 0.63 3.66 -68.20 -0.25 0.38 16 23 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 24 N -0.72 -4.70 6.05 -59.19 -0.36 -5.06 16 25 C 0.71 6.35 8.99 -88.02 -0.79 5.56 16 26 O -0.55 -6.91 18.04 5.33 0.10 -6.81 16 27 N -0.68 -5.15 5.70 -15.79 -0.09 -5.24 16 28 C 0.53 4.63 8.14 -10.55 -0.09 4.54 16 29 O -0.46 -5.49 18.02 5.60 0.10 -5.39 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 31 H 0.06 1.42 7.46 -51.93 -0.39 1.04 16 32 H 0.05 1.26 7.67 -51.93 -0.40 0.86 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 0.65 7.67 -51.93 -0.40 0.26 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.44 2.10 8.60 -40.82 -0.35 1.75 16 42 H 0.43 2.48 8.96 -40.82 -0.37 2.12 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -34.62 351.34 -8.47 -43.08 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.66 Total: 2.71 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: -2.56 Total: 15.90 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.80 Total: -60.23 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.29 Total: -22.78 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.62 -8.47 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032772414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.406 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds