Wall clock time and date at job start Fri Apr 10 2020 18:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00000 * 2 1 4 4 H 1.48495 * 109.46858 * 239.99555 * 3 2 1 5 5 H 1.48501 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47049 * 119.99649 * 3 2 1 7 7 C 1.38814 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99534 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00322 * 0.02562 * 7 2 1 10 10 C 1.47873 * 126.94178 * 359.97438 * 9 7 2 11 11 C 1.55486 * 105.16871 * 181.92548 * 10 9 7 12 12 H 1.08999 * 116.03533 * 159.75056 * 11 10 9 13 13 C 1.57436 * 99.68799 * 32.85784 * 11 10 9 14 14 C 1.49288 * 126.94805 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.14782 * 15.83880 * 14 9 7 16 16 C 1.56021 * 104.09130 * 246.69595 * 14 9 7 17 17 N 1.47869 * 105.10438 * 288.76377 * 16 14 9 18 18 C 1.34777 * 126.94196 * 181.98054 * 17 16 14 19 19 O 1.21284 * 119.99279 * 180.02562 * 18 17 16 20 20 C 1.50697 * 120.00266 * 0.02562 * 18 17 16 21 21 C 1.52991 * 109.47144 * 180.02562 * 20 18 17 22 22 C 1.53006 * 109.47225 * 180.02562 * 21 20 18 23 23 H 1.08998 * 110.53022 * 307.82622 * 22 21 20 24 24 N 1.47309 * 110.40116 * 70.94133 * 22 21 20 25 25 C 1.34525 * 106.61823 * 118.81439 * 24 22 21 26 26 O 1.21543 * 123.77085 * 179.85399 * 25 24 22 27 27 N 1.33791 * 112.45685 * 359.58762 * 25 24 22 28 28 C 1.34766 * 111.64749 * 0.26475 * 27 25 24 29 29 O 1.21226 * 127.15862 * 180.02562 * 28 27 25 30 30 H 0.97001 * 119.99775 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.31684 * 300.90823 * 10 9 7 32 32 H 1.08996 * 110.31493 * 62.99879 * 10 9 7 33 33 H 1.08999 * 112.53818 * 191.70531 * 13 11 10 34 34 H 1.09004 * 112.31543 * 64.17292 * 13 11 10 35 35 H 1.08997 * 110.30979 * 169.85737 * 16 14 9 36 36 H 1.09005 * 110.39784 * 47.71737 * 16 14 9 37 37 H 1.09007 * 109.46707 * 60.00040 * 20 18 17 38 38 H 1.09000 * 109.47241 * 300.00161 * 20 18 17 39 39 H 1.08998 * 109.47673 * 59.99731 * 21 20 18 40 40 H 1.09000 * 109.47048 * 300.00114 * 21 20 18 41 41 H 0.97005 * 126.68989 * 298.69915 * 24 22 21 42 42 H 0.97005 * 124.17677 * 180.30951 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1423 -2.5668 0.0005 11 6 -0.3649 -4.1048 0.0510 12 1 -1.3441 -4.4354 0.3972 13 6 0.8840 -4.5251 0.9125 14 6 1.9102 -3.7617 0.0016 15 1 2.9642 -3.8350 0.2695 16 6 1.5091 -4.3463 -1.3882 17 7 0.0523 -4.5841 -1.3004 18 6 -0.7397 -5.1198 -2.2503 19 8 -1.9267 -5.2578 -2.0430 20 6 -0.1504 -5.5474 -3.5697 21 6 -1.2555 -6.1173 -4.4610 22 6 -0.6571 -6.5521 -5.8004 23 1 -0.0787 -5.7406 -6.2421 24 7 0.1737 -7.7558 -5.6251 25 6 -0.3832 -8.7207 -6.3791 26 8 0.0581 -9.8500 -6.4653 27 7 -1.4802 -8.3001 -7.0191 28 6 -1.7481 -7.0072 -6.7493 29 8 -2.6701 -6.3459 -7.1763 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5815 -2.0913 0.8776 32 1 -0.5740 -2.1519 -0.9102 33 1 1.0491 -5.6025 0.9110 34 1 0.8451 -4.1190 1.9233 35 1 2.0352 -5.2833 -1.5706 36 1 1.7286 -3.6295 -2.1796 37 1 0.6086 -6.3109 -3.3982 38 1 0.3042 -4.6869 -4.0605 39 1 -2.0142 -5.3537 -4.6324 40 1 -1.7105 -6.9778 -3.9704 41 1 0.9684 -7.8364 -5.0748 42 1 -2.0170 -8.8572 -7.6044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032772414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:36 Heat of formation + Delta-G solvation = -51.687812 kcal Electronic energy + Delta-G solvation = -27331.886472 eV Core-core repulsion = 23313.303094 eV Total energy + Delta-G solvation = -4018.583378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.37730 -41.52809 -39.75361 -39.46104 -37.51113 -35.60728 -35.41675 -33.54086 -32.91467 -30.79081 -30.20749 -28.70140 -26.92957 -25.46419 -24.44722 -23.65907 -22.42870 -21.74726 -21.37480 -19.91385 -19.42208 -18.79786 -18.01896 -17.92142 -17.51544 -17.35061 -16.91865 -16.76268 -16.52436 -16.17665 -15.68350 -15.55311 -15.32214 -14.90266 -14.74671 -14.13247 -13.78886 -13.67110 -13.42846 -13.35741 -13.06152 -12.88658 -12.79409 -12.64906 -12.29224 -12.22189 -12.13284 -12.05321 -12.02024 -11.82668 -11.49993 -11.49577 -11.39129 -10.89972 -10.65177 -10.51942 -9.46875 -8.87749 -7.82154 -5.17610 0.51357 1.43694 1.48906 1.51117 1.57337 1.72019 1.94721 2.04604 2.18361 2.50815 2.93435 3.35212 3.36725 3.49623 3.77296 3.84012 3.89148 3.95983 4.07435 4.19351 4.26591 4.28917 4.36952 4.59906 4.67193 4.77952 4.89515 4.91507 5.01427 5.05809 5.07124 5.14140 5.19490 5.30042 5.48751 5.57294 5.68462 5.82267 5.86695 6.12826 6.37066 6.76799 7.05486 7.12891 7.24906 7.74257 8.44498 9.28626 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.002775 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.238843 B =10089.177170 C =10474.751319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.306 1.306 6 H -0.276 1.276 7 C -0.228 4.228 8 H 0.097 0.903 9 N -0.617 5.617 10 C 0.187 3.813 11 C 0.099 3.901 12 H 0.107 0.893 13 C -0.129 4.129 14 C 0.132 3.868 15 H 0.135 0.865 16 C 0.092 3.908 17 N -0.610 5.610 18 C 0.516 3.484 19 O -0.600 6.600 20 C -0.121 4.121 21 C -0.097 4.097 22 C 0.106 3.894 23 H 0.168 0.832 24 N -0.700 5.700 25 C 0.706 3.294 26 O -0.583 6.583 27 N -0.673 5.673 28 C 0.532 3.468 29 O -0.496 6.496 30 H 0.242 0.758 31 H 0.011 0.989 32 H -0.003 1.003 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.454 0.546 42 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 -16.427 -9.931 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.264 4.264 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.233 1.233 6 H -0.202 1.202 7 C -0.357 4.357 8 H 0.114 0.886 9 N -0.342 5.342 10 C 0.061 3.939 11 C -0.005 4.005 12 H 0.125 0.875 13 C -0.168 4.168 14 C 0.026 3.974 15 H 0.153 0.847 16 C -0.032 4.032 17 N -0.343 5.343 18 C 0.307 3.693 19 O -0.482 6.482 20 C -0.160 4.160 21 C -0.136 4.136 22 C -0.003 4.003 23 H 0.185 0.815 24 N -0.366 5.366 25 C 0.405 3.595 26 O -0.460 6.460 27 N -0.344 5.344 28 C 0.318 3.682 29 O -0.366 6.366 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.016 0.984 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.301 0.699 42 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 4.437 -16.435 -10.134 19.811 hybrid contribution -0.406 1.312 0.118 1.379 sum 4.031 -15.122 -10.016 18.581 Atomic orbital electron populations 1.70160 1.06614 1.25108 1.58854 1.25646 0.96333 1.01154 1.03311 0.85191 0.76979 0.79021 0.78378 1.20014 1.23287 1.20154 1.19502 0.91273 0.83134 1.41803 0.88559 1.45504 1.01379 1.01192 1.86140 1.21406 0.85073 0.90446 0.97001 1.24067 0.99049 0.94044 0.83335 0.87468 1.24092 0.93973 1.00864 0.97913 1.23625 0.98097 0.83063 0.92631 0.84749 1.23236 0.78902 1.01096 0.99966 1.49358 1.10450 1.59533 1.14977 1.21049 0.85641 0.76546 0.86098 1.90674 1.17505 1.58545 1.81456 1.21614 0.99443 1.04333 0.90656 1.21416 0.98034 1.02249 0.91897 1.22175 0.91169 0.91042 0.95908 0.81491 1.45510 1.31467 1.09970 1.49668 1.15907 0.80005 0.84465 0.79074 1.91053 1.66800 1.19731 1.68395 1.44271 1.28239 1.14728 1.47116 1.21005 0.85356 0.81417 0.80376 1.90870 1.31946 1.59938 1.53886 0.94840 0.97038 0.98449 0.87724 0.90794 0.87142 0.92219 0.85228 0.86503 0.90322 0.90897 0.69860 0.71742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.23 10.56 21.65 0.23 -57.00 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 3 Si 0.98 43.94 29.55 68.60 2.03 45.97 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.23 -11.56 10.37 84.03 0.87 -10.69 16 8 H 0.10 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -27.94 3.02 -649.71 -1.96 -29.90 16 10 C 0.19 8.95 4.75 86.97 0.41 9.36 16 11 C 0.10 3.57 5.23 46.86 0.25 3.82 16 12 H 0.11 3.97 8.05 -2.39 -0.02 3.95 16 13 C -0.13 -3.71 6.82 33.57 0.23 -3.48 16 14 C 0.13 4.05 5.52 46.91 0.26 4.30 16 15 H 0.13 3.39 8.14 -2.39 -0.02 3.37 16 16 C 0.09 2.33 6.01 87.16 0.52 2.85 16 17 N -0.61 -18.76 2.95 -768.53 -2.27 -21.03 16 18 C 0.52 15.25 7.90 87.66 0.69 15.94 16 19 O -0.60 -23.11 16.33 -3.04 -0.05 -23.16 16 20 C -0.12 -1.94 4.92 29.84 0.15 -1.80 16 21 C -0.10 -1.59 4.24 30.59 0.13 -1.46 16 22 C 0.11 1.12 3.66 44.38 0.16 1.28 16 23 H 0.17 0.83 8.14 -2.39 -0.02 0.81 16 24 N -0.70 -6.55 6.05 -459.60 -2.78 -9.33 16 25 C 0.71 11.07 8.99 179.44 1.61 12.69 16 26 O -0.58 -13.69 18.04 -3.85 -0.07 -13.76 16 27 N -0.67 -9.07 5.70 -441.12 -2.52 -11.59 16 28 C 0.53 8.42 8.14 87.94 0.72 9.14 16 29 O -0.50 -11.54 18.02 -2.86 -0.05 -11.59 16 30 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.01 0.63 7.46 -2.39 -0.02 0.62 16 32 H 0.00 -0.15 7.67 -2.39 -0.02 -0.17 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.13 1.09 7.67 -2.38 -0.02 1.07 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 41 H 0.45 2.15 8.60 -92.70 -0.80 1.35 16 42 H 0.44 4.57 8.96 -92.70 -0.83 3.74 16 Total: -1.00 -81.99 351.34 -1.52 -83.52 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -0.55 Total: 9.38 kcal Atomic # 6 Polarization: 32.03 SS G_CDS: 6.47 Total: 38.50 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -9.30 Total: -128.86 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.17 Total: -48.51 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -81.99 -1.52 -83.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032772414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.830 kcal (2) G-P(sol) polarization free energy of solvation -81.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds