Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47570 * 300.00346 * 3 2 1 6 6 H 1.48507 * 109.47022 * 60.00201 * 3 2 1 7 7 C 1.38812 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00091 * 196.92304 * 7 2 1 9 9 N 1.36938 * 119.99505 * 16.91451 * 7 2 1 10 10 C 1.47156 * 120.97777 * 206.24723 * 9 7 2 11 11 C 1.53294 * 108.38172 * 230.51594 * 10 9 7 12 12 O 1.42956 * 109.26764 * 307.72126 * 11 10 9 13 13 C 1.42962 * 114.16754 * 62.49952 * 12 11 10 14 14 H 1.09000 * 109.51077 * 57.45235 * 13 12 11 15 15 C 1.52999 * 109.51499 * 177.55237 * 13 12 11 16 16 N 1.46494 * 109.47345 * 299.90235 * 15 13 12 17 17 C 1.34779 * 120.00478 * 179.97438 * 16 15 13 18 18 O 1.21568 * 119.99608 * 359.97438 * 17 16 15 19 19 C 1.47714 * 120.00409 * 179.97438 * 17 16 15 20 20 C 1.40941 * 125.97563 * 179.97438 * 19 17 16 21 21 C 1.36173 * 107.95386 * 179.50284 * 20 19 17 22 22 N 1.35811 * 107.31001 * 0.54130 * 21 20 19 23 23 N 1.31847 * 125.97268 * 359.68766 * 19 17 16 24 24 C 1.47428 * 108.06775 * 179.18022 * 22 21 20 25 25 C 1.54648 * 102.34865 * 344.68698 * 24 22 21 26 26 O 1.36123 * 140.88162 * 180.69773 * 21 20 19 27 27 C 1.47146 * 120.98687 * 26.22824 * 9 7 2 28 28 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.68499 * 350.24039 * 10 9 7 30 30 H 1.09004 * 109.68157 * 110.75937 * 10 9 7 31 31 H 1.09003 * 109.51325 * 67.62420 * 11 10 9 32 32 H 1.09008 * 109.51371 * 187.77488 * 11 10 9 33 33 H 1.08998 * 109.47298 * 179.89816 * 15 13 12 34 34 H 1.09002 * 109.46876 * 59.89922 * 15 13 12 35 35 H 0.97004 * 120.00385 * 359.97438 * 16 15 13 36 36 H 1.08001 * 126.02444 * 359.52868 * 20 19 17 37 37 H 1.08998 * 110.82621 * 226.46851 * 24 22 21 38 38 H 1.09004 * 110.99704 * 102.98098 * 24 22 21 39 39 H 1.08993 * 110.85400 * 266.66014 * 25 24 22 40 40 H 1.09002 * 110.85022 * 143.03422 * 25 24 22 41 41 H 1.09000 * 109.68049 * 9.75714 * 27 9 7 42 42 H 1.09000 * 109.71428 * 249.22610 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2224 0.2717 9 7 1.3700 -2.3622 -0.3461 10 6 1.8341 -3.6634 0.1609 11 6 1.9814 -4.6206 -1.0274 12 8 0.7657 -4.6293 -1.7796 13 6 0.4245 -3.3659 -2.3552 14 1 1.2373 -3.0272 -2.9976 15 6 -0.8545 -3.5099 -3.1824 16 7 -0.6374 -4.4880 -4.2512 17 6 -1.6337 -4.7793 -5.1108 18 8 -2.7128 -4.2307 -4.9990 19 6 -1.4146 -5.7652 -6.1888 20 6 -2.3632 -6.1632 -7.1522 21 6 -1.7719 -7.0763 -7.9713 22 7 -0.5004 -7.2530 -7.5282 23 7 -0.2956 -6.4227 -6.4213 24 6 0.1500 -8.2547 -8.3926 25 6 -1.0544 -8.8937 -9.1224 26 8 -2.0386 -7.8450 -9.0626 27 6 0.1975 -2.3445 -1.2350 28 1 -0.4850 0.8400 0.0004 29 1 2.7974 -3.5421 0.6562 30 1 1.1061 -4.0631 0.8669 31 1 2.8005 -4.2867 -1.6645 32 1 2.1902 -5.6259 -0.6615 33 1 -1.1150 -2.5460 -3.6195 34 1 -1.6668 -3.8487 -2.5394 35 1 0.2235 -4.9261 -4.3403 36 1 -3.3799 -5.8067 -7.2276 37 1 0.6795 -8.9968 -7.7952 38 1 0.8253 -7.7779 -9.1031 39 1 -1.4013 -9.7819 -8.5944 40 1 -0.8012 -9.1296 -10.1560 41 1 0.0771 -1.3498 -1.6640 42 1 -0.6959 -2.6113 -0.6704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035397481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = 21.572048 kcal Electronic energy + Delta-G solvation = -26794.724513 eV Core-core repulsion = 22779.317921 eV Total energy + Delta-G solvation = -4015.406592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59922 -39.79712 -38.70250 -38.14972 -34.82691 -34.29921 -33.65138 -31.43302 -31.08689 -30.07030 -29.15677 -27.41947 -25.92289 -24.33823 -23.30093 -22.86170 -21.76210 -21.45525 -20.21650 -19.49102 -18.12531 -17.38167 -16.98732 -16.64117 -16.08119 -15.91009 -15.75284 -15.37862 -14.98867 -14.93970 -14.40208 -14.30912 -14.12233 -13.84754 -13.67240 -13.24056 -13.15911 -12.91103 -12.79074 -12.74495 -12.25189 -11.69792 -11.52368 -11.19216 -11.09801 -10.85321 -10.71711 -10.42085 -10.24509 -10.17114 -9.97127 -9.63961 -9.52318 -9.07269 -8.86122 -8.81281 -8.55071 -6.75708 -5.84529 -3.28182 1.10197 1.50286 1.86793 2.41324 3.25038 3.34766 3.37360 3.42415 3.44353 3.49721 4.05472 4.14746 4.27800 4.44030 4.46259 4.59464 4.74036 4.95327 5.05159 5.19981 5.29498 5.35946 5.55271 5.63074 5.64660 5.87505 5.94688 6.02662 6.10588 6.14467 6.24720 6.36862 6.49687 6.51627 6.63961 6.78966 7.07575 7.13717 7.48501 7.66329 7.71462 7.85621 8.24947 8.33140 9.10813 9.73749 10.30775 11.23610 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002459 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.213647 B =11384.662463 C =11849.756184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.051 3.949 12 O -0.389 6.389 13 C 0.055 3.945 14 H 0.057 0.943 15 C 0.131 3.869 16 N -0.701 5.701 17 C 0.598 3.402 18 O -0.525 6.525 19 C 0.061 3.939 20 C -0.212 4.212 21 C 0.231 3.769 22 N -0.414 5.414 23 N -0.216 5.216 24 C 0.098 3.902 25 C 0.042 3.958 26 O -0.279 6.279 27 C 0.152 3.848 28 H 0.256 0.744 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.166 0.834 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 -18.691 -18.049 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.017 4.017 11 C -0.028 4.028 12 O -0.309 6.309 13 C -0.005 4.005 14 H 0.075 0.925 15 C 0.008 3.992 16 N -0.352 5.352 17 C 0.380 3.620 18 O -0.399 6.399 19 C -0.106 4.106 20 C -0.242 4.242 21 C 0.063 3.937 22 N -0.211 5.211 23 N -0.046 5.046 24 C -0.023 4.023 25 C -0.035 4.035 26 O -0.186 6.186 27 C 0.026 3.974 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.245 0.755 36 H 0.184 0.816 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.665 -18.514 -17.743 25.651 hybrid contribution 0.437 0.760 -0.295 0.925 sum 1.102 -17.753 -18.038 25.333 Atomic orbital electron populations 1.70022 1.05233 1.25682 1.53585 1.25062 0.95366 0.98506 1.00712 0.86197 0.79270 0.83749 0.77392 1.20264 1.21409 1.21622 1.19223 0.92654 0.84474 1.42147 0.91313 1.44056 1.33752 1.01380 1.52650 1.21606 0.98607 0.87551 0.93979 1.23002 0.86212 0.99582 0.93960 1.87784 1.42212 1.31448 1.69443 1.23159 0.94970 0.86513 0.95851 0.92509 1.21534 0.98056 0.92274 0.87347 1.45853 1.15469 1.43589 1.30293 1.16759 0.84462 0.80634 0.80158 1.90829 1.24764 1.51744 1.72533 1.22050 0.91540 0.98961 0.98085 1.20077 1.02350 1.05052 0.96694 1.20759 0.87190 0.96778 0.88945 1.50676 1.11020 1.34761 1.24679 1.77718 1.21025 1.06344 0.99548 1.23244 0.96888 0.89889 0.92296 1.24461 0.84626 0.90542 1.03833 1.87144 1.52013 1.40108 1.39332 1.21312 0.89511 0.97612 0.88985 0.93422 0.91994 0.95526 0.93862 0.90038 0.89486 0.90231 0.75536 0.81598 0.86887 0.87626 0.88718 0.85174 0.88506 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.14 55.49 0.62 -25.24 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -14.85 3.05 -171.83 -0.52 -15.37 16 10 C 0.11 2.27 6.74 -3.53 -0.02 2.25 16 11 C 0.05 0.89 6.98 37.31 0.26 1.15 16 12 O -0.39 -7.38 10.14 -35.23 -0.36 -7.73 16 13 C 0.05 1.05 2.86 -26.58 -0.08 0.97 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.13 2.28 5.37 -4.05 -0.02 2.25 16 16 N -0.70 -11.05 5.45 -61.30 -0.33 -11.38 16 17 C 0.60 9.78 7.83 -12.39 -0.10 9.68 16 18 O -0.52 -9.95 16.90 5.31 0.09 -9.86 16 19 C 0.06 0.88 7.09 -82.97 -0.59 0.30 16 20 C -0.21 -2.78 10.60 -39.30 -0.42 -3.19 16 21 C 0.23 2.61 8.32 -16.53 -0.14 2.47 16 22 N -0.41 -4.46 5.01 -59.63 -0.30 -4.76 16 23 N -0.22 -2.94 12.39 33.31 0.41 -2.53 16 24 C 0.10 0.48 8.10 -2.67 -0.02 0.46 16 25 C 0.04 0.15 8.08 38.02 0.31 0.45 16 26 O -0.28 -2.43 11.19 -20.13 -0.23 -2.66 16 27 C 0.15 3.59 4.73 -3.54 -0.02 3.58 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.41 6.03 8.05 -40.82 -0.33 5.70 16 36 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.13 0.03 8.14 -51.93 -0.42 -0.40 16 41 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -34.35 353.41 -7.07 -41.42 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.68 Total: 3.11 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -1.06 Total: 13.28 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.13 Total: -59.28 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.49 Total: -20.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.35 -7.07 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035397481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.988 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds