Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47570 * 300.00346 * 3 2 1 6 6 H 1.48507 * 109.47022 * 60.00201 * 3 2 1 7 7 C 1.38812 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00091 * 196.92304 * 7 2 1 9 9 N 1.36938 * 119.99505 * 16.91451 * 7 2 1 10 10 C 1.47156 * 120.97777 * 206.24723 * 9 7 2 11 11 C 1.53294 * 108.38172 * 230.51594 * 10 9 7 12 12 O 1.42956 * 109.26764 * 307.72126 * 11 10 9 13 13 C 1.42962 * 114.16754 * 62.49952 * 12 11 10 14 14 H 1.09000 * 109.51077 * 57.45235 * 13 12 11 15 15 C 1.52999 * 109.51499 * 177.55237 * 13 12 11 16 16 N 1.46494 * 109.47345 * 299.90235 * 15 13 12 17 17 C 1.34779 * 120.00478 * 179.97438 * 16 15 13 18 18 O 1.21568 * 119.99608 * 359.97438 * 17 16 15 19 19 C 1.47714 * 120.00409 * 179.97438 * 17 16 15 20 20 C 1.40941 * 125.97563 * 179.97438 * 19 17 16 21 21 C 1.36173 * 107.95386 * 179.50284 * 20 19 17 22 22 N 1.35811 * 107.31001 * 0.54130 * 21 20 19 23 23 N 1.31847 * 125.97268 * 359.68766 * 19 17 16 24 24 C 1.47428 * 108.06775 * 179.18022 * 22 21 20 25 25 C 1.54648 * 102.34865 * 344.68698 * 24 22 21 26 26 O 1.36123 * 140.88162 * 180.69773 * 21 20 19 27 27 C 1.47146 * 120.98687 * 26.22824 * 9 7 2 28 28 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.68499 * 350.24039 * 10 9 7 30 30 H 1.09004 * 109.68157 * 110.75937 * 10 9 7 31 31 H 1.09003 * 109.51325 * 67.62420 * 11 10 9 32 32 H 1.09008 * 109.51371 * 187.77488 * 11 10 9 33 33 H 1.08998 * 109.47298 * 179.89816 * 15 13 12 34 34 H 1.09002 * 109.46876 * 59.89922 * 15 13 12 35 35 H 0.97004 * 120.00385 * 359.97438 * 16 15 13 36 36 H 1.08001 * 126.02444 * 359.52868 * 20 19 17 37 37 H 1.08998 * 110.82621 * 226.46851 * 24 22 21 38 38 H 1.09004 * 110.99704 * 102.98098 * 24 22 21 39 39 H 1.08993 * 110.85400 * 266.66014 * 25 24 22 40 40 H 1.09002 * 110.85022 * 143.03422 * 25 24 22 41 41 H 1.09000 * 109.68049 * 9.75714 * 27 9 7 42 42 H 1.09000 * 109.71428 * 249.22610 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2224 0.2717 9 7 1.3700 -2.3622 -0.3461 10 6 1.8341 -3.6634 0.1609 11 6 1.9814 -4.6206 -1.0274 12 8 0.7657 -4.6293 -1.7796 13 6 0.4245 -3.3659 -2.3552 14 1 1.2373 -3.0272 -2.9976 15 6 -0.8545 -3.5099 -3.1824 16 7 -0.6374 -4.4880 -4.2512 17 6 -1.6337 -4.7793 -5.1108 18 8 -2.7128 -4.2307 -4.9990 19 6 -1.4146 -5.7652 -6.1888 20 6 -2.3632 -6.1632 -7.1522 21 6 -1.7719 -7.0763 -7.9713 22 7 -0.5004 -7.2530 -7.5282 23 7 -0.2956 -6.4227 -6.4213 24 6 0.1500 -8.2547 -8.3926 25 6 -1.0544 -8.8937 -9.1224 26 8 -2.0386 -7.8450 -9.0626 27 6 0.1975 -2.3445 -1.2350 28 1 -0.4850 0.8400 0.0004 29 1 2.7974 -3.5421 0.6562 30 1 1.1061 -4.0631 0.8669 31 1 2.8005 -4.2867 -1.6645 32 1 2.1902 -5.6259 -0.6615 33 1 -1.1150 -2.5460 -3.6195 34 1 -1.6668 -3.8487 -2.5394 35 1 0.2235 -4.9261 -4.3403 36 1 -3.3799 -5.8067 -7.2276 37 1 0.6795 -8.9968 -7.7952 38 1 0.8253 -7.7779 -9.1031 39 1 -1.4013 -9.7819 -8.5944 40 1 -0.8012 -9.1296 -10.1560 41 1 0.0771 -1.3498 -1.6640 42 1 -0.6959 -2.6113 -0.6704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035397481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = -6.342281 kcal Electronic energy + Delta-G solvation = -26795.934969 eV Core-core repulsion = 22779.317921 eV Total energy + Delta-G solvation = -4016.617048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.37890 -41.00561 -40.06827 -39.26738 -36.49144 -35.90796 -34.32260 -33.26016 -32.64587 -31.01203 -29.96319 -29.08507 -27.49846 -25.38539 -24.93801 -23.78773 -23.07674 -22.46283 -21.66214 -20.95049 -19.01321 -18.84700 -18.13945 -17.58016 -17.37744 -17.19440 -17.03870 -16.58114 -16.26322 -16.06319 -15.97752 -15.54034 -15.37142 -15.10921 -15.03363 -14.59277 -14.46939 -14.35664 -13.96574 -13.73926 -13.18323 -13.13139 -13.01333 -12.70200 -12.51032 -12.26099 -12.17754 -12.13653 -12.06550 -11.88274 -11.50756 -11.27553 -10.80474 -10.55358 -10.40855 -10.14179 -9.69551 -8.75305 -7.90890 -5.38288 0.09788 0.78160 0.92651 1.46080 1.48284 1.58651 1.64448 2.17197 2.19340 2.48322 2.78345 3.01620 3.23917 3.37308 3.49877 3.78530 3.85159 4.00851 4.06374 4.12931 4.24657 4.26820 4.43892 4.45761 4.47899 4.51447 4.59872 4.63641 4.67407 4.75029 4.81965 4.96554 5.07460 5.14805 5.23193 5.24958 5.53643 5.60916 5.75800 6.19233 6.26383 6.32958 6.46684 6.97902 7.05942 7.74604 8.28431 9.15267 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002459 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.213647 B =11384.662463 C =11849.756184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.615 5.615 10 C 0.102 3.898 11 C 0.057 3.943 12 O -0.391 6.391 13 C 0.075 3.925 14 H 0.064 0.936 15 C 0.141 3.859 16 N -0.693 5.693 17 C 0.600 3.400 18 O -0.558 6.558 19 C 0.043 3.957 20 C -0.237 4.237 21 C 0.241 3.759 22 N -0.408 5.408 23 N -0.230 5.230 24 C 0.085 3.915 25 C 0.040 3.960 26 O -0.289 6.289 27 C 0.159 3.841 28 H 0.252 0.748 29 H 0.073 0.927 30 H 0.016 0.984 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.416 0.584 36 H 0.164 0.836 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.171 0.829 41 H 0.069 0.931 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -21.031 -20.028 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.339 5.339 10 C -0.023 4.023 11 C -0.021 4.021 12 O -0.310 6.310 13 C 0.016 3.984 14 H 0.082 0.918 15 C 0.017 3.983 16 N -0.343 5.343 17 C 0.384 3.616 18 O -0.435 6.435 19 C -0.122 4.122 20 C -0.267 4.267 21 C 0.072 3.928 22 N -0.207 5.207 23 N -0.062 5.062 24 C -0.033 4.033 25 C -0.034 4.034 26 O -0.196 6.196 27 C 0.033 3.967 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.182 0.818 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.188 0.812 41 H 0.087 0.913 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 2.760 -20.917 -19.740 28.893 hybrid contribution -0.139 1.301 0.264 1.335 sum 2.621 -19.616 -19.477 27.766 Atomic orbital electron populations 1.70180 1.06716 1.26058 1.55126 1.25845 0.96100 1.01663 1.01049 0.85173 0.78665 0.79600 0.76788 1.18830 1.21580 1.22015 1.19575 0.93047 0.85518 1.41308 0.90824 1.44357 1.33759 1.02423 1.53367 1.21822 0.98607 0.86443 0.95426 1.23089 0.85801 1.00733 0.92471 1.87799 1.43086 1.30680 1.69441 1.22777 0.95791 0.85552 0.94298 0.91827 1.21274 0.96780 0.92706 0.87543 1.45671 1.15812 1.43163 1.29702 1.16994 0.83806 0.80501 0.80294 1.90800 1.26008 1.53153 1.73535 1.21636 0.92635 0.99654 0.98323 1.20131 1.02550 1.06436 0.97628 1.20692 0.87191 0.96068 0.88886 1.51104 1.11550 1.34340 1.23690 1.77581 1.20627 1.06990 1.00990 1.23852 0.97829 0.89405 0.92196 1.24961 0.82671 0.89374 1.06416 1.87161 1.53609 1.40981 1.37821 1.21088 0.88381 0.97485 0.89765 0.93895 0.90874 0.96553 0.92862 0.86170 0.89672 0.91349 0.74683 0.81807 0.84557 0.85574 0.87058 0.81184 0.91261 0.97849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 11.14 21.65 0.24 -55.16 16 2 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 3 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.26 -14.41 9.65 84.03 0.81 -13.60 16 8 H 0.07 3.86 7.88 -2.91 -0.02 3.83 16 9 N -0.61 -30.98 3.05 -697.56 -2.13 -33.11 16 10 C 0.10 4.18 6.74 86.35 0.58 4.76 16 11 C 0.06 1.86 6.98 72.08 0.50 2.36 16 12 O -0.39 -14.30 10.14 -148.98 -1.51 -15.81 16 13 C 0.08 2.90 2.86 30.69 0.09 2.99 16 14 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 15 C 0.14 5.02 5.37 86.38 0.46 5.48 16 16 N -0.69 -21.96 5.45 -466.11 -2.54 -24.50 16 17 C 0.60 20.13 7.83 86.75 0.68 20.81 16 18 O -0.56 -22.06 16.90 -3.93 -0.07 -22.13 16 19 C 0.04 1.25 7.09 42.31 0.30 1.55 16 20 C -0.24 -6.27 10.60 22.45 0.24 -6.03 16 21 C 0.24 5.11 8.32 83.60 0.70 5.81 16 22 N -0.41 -7.93 5.01 -453.32 -2.27 -10.20 16 23 N -0.23 -6.03 12.39 -48.51 -0.60 -6.63 16 24 C 0.09 0.52 8.10 86.76 0.70 1.22 16 25 C 0.04 0.12 8.08 72.54 0.59 0.71 16 26 O -0.29 -4.30 11.19 -94.96 -1.06 -5.36 16 27 C 0.16 7.78 4.73 86.35 0.41 8.18 16 28 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 29 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 33 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.42 12.00 8.05 -92.70 -0.75 11.26 16 36 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.13 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.17 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.07 3.75 6.14 -2.39 -0.01 3.73 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -76.81 353.41 -1.12 -77.93 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.31 Total: 16.55 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 6.48 Total: 31.83 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -7.30 Total: -129.60 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -2.64 Total: -43.29 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.81 -1.12 -77.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035397481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.588 kcal (2) G-P(sol) polarization free energy of solvation -76.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds