Wall clock time and date at job start Fri Apr 10 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00234 * 2 1 4 4 H 1.48504 * 109.47579 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47121 * 299.99729 * 3 2 1 6 6 H 1.48500 * 109.47500 * 59.99842 * 3 2 1 7 7 C 1.38813 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99686 * 196.91691 * 7 2 1 9 9 N 1.36938 * 120.00295 * 16.91957 * 7 2 1 10 10 C 1.47145 * 120.97999 * 26.25542 * 9 7 2 11 11 C 1.53292 * 108.38554 * 129.44454 * 10 9 7 12 12 O 1.42959 * 109.26868 * 52.27759 * 11 10 9 13 13 C 1.42963 * 114.16487 * 297.50500 * 12 11 10 14 14 H 1.09000 * 109.51649 * 302.54521 * 13 12 11 15 15 C 1.52997 * 109.51031 * 182.44347 * 13 12 11 16 16 N 1.46502 * 109.47431 * 65.10139 * 15 13 12 17 17 C 1.34772 * 120.00377 * 180.27390 * 16 15 13 18 18 O 1.21607 * 120.00065 * 359.72458 * 17 16 15 19 19 C 1.47399 * 120.00087 * 179.72304 * 17 16 15 20 20 C 1.38211 * 126.46010 * 0.02990 * 19 17 16 21 21 N 1.34261 * 108.39072 * 180.02562 * 20 19 17 22 22 H 0.97001 * 125.38736 * 179.97438 * 21 20 19 23 23 C 1.37775 * 109.21906 * 359.97438 * 21 20 19 24 24 C 1.46814 * 125.84930 * 180.02562 * 23 21 20 25 25 N 1.34783 * 119.99785 * 0.02562 * 24 23 21 26 26 O 1.21672 * 120.00177 * 180.02562 * 24 23 21 27 27 C 1.36348 * 108.30280 * 359.72545 * 23 21 20 28 28 C 1.47152 * 120.98336 * 206.23277 * 9 7 2 29 29 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.68136 * 249.16434 * 10 9 7 31 31 H 1.08998 * 109.68213 * 9.68376 * 10 9 7 32 32 H 1.09005 * 109.51673 * 172.22547 * 11 10 9 33 33 H 1.09006 * 109.51585 * 292.37564 * 11 10 9 34 34 H 1.09001 * 109.47666 * 305.10228 * 15 13 12 35 35 H 1.09004 * 109.47406 * 185.09828 * 15 13 12 36 36 H 0.97004 * 119.99424 * 0.02562 * 16 15 13 37 37 H 1.07994 * 125.80372 * 359.97438 * 20 19 17 38 38 H 0.96998 * 120.00031 * 359.97438 * 25 24 23 39 39 H 0.96997 * 119.99582 * 180.02562 * 25 24 23 40 40 H 1.08000 * 126.49656 * 180.29508 * 27 23 21 41 41 H 1.08996 * 109.68295 * 110.83218 * 28 9 7 42 42 H 1.09004 * 109.71344 * 350.29786 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2223 0.2727 9 7 1.3700 -2.3626 -0.3441 10 6 0.1979 -2.3456 -1.2335 11 6 0.4257 -3.3675 -2.3531 12 8 0.7669 -4.6305 -1.7768 13 6 1.9822 -4.6212 -1.0239 14 1 2.8021 -4.2880 -1.6602 15 6 2.2754 -6.0318 -0.5093 16 7 2.5323 -6.9221 -1.6441 17 6 2.8099 -8.2235 -1.4304 18 8 2.8521 -8.6577 -0.2953 19 6 3.0624 -9.1205 -2.5724 20 6 3.0492 -8.7713 -3.9096 21 7 3.3250 -9.8662 -4.6361 22 1 3.3780 -9.8994 -5.6041 23 6 3.5206 -10.9350 -3.7890 24 6 3.8431 -12.3079 -4.1973 25 7 3.9725 -12.6093 -5.5046 26 8 3.9937 -13.1735 -3.3556 27 6 3.3700 -10.4980 -2.5063 28 6 1.8340 -3.6634 0.1638 29 1 -0.4850 0.8401 0.0004 30 1 -0.6953 -2.6127 -0.6689 31 1 0.0771 -1.3509 -1.6627 32 1 -0.4852 -3.4707 -2.9429 33 1 1.2394 -3.0293 -2.9949 34 1 1.4171 -6.3991 0.0534 35 1 3.1514 -6.0074 0.1388 36 1 2.4991 -6.5756 -2.5496 37 1 2.8501 -7.7855 -4.3033 38 1 3.8521 -11.9194 -6.1757 39 1 4.1852 -13.5164 -5.7744 40 1 3.4650 -11.0926 -1.6098 41 1 1.1056 -4.0632 0.8691 42 1 2.7970 -3.5421 0.6599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035612567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:54 Heat of formation + Delta-G solvation = -81.763419 kcal Electronic energy + Delta-G solvation = -26307.802402 eV Core-core repulsion = 22287.914848 eV Total energy + Delta-G solvation = -4019.887554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.60292 -40.62200 -40.01431 -39.57044 -36.46939 -35.70524 -34.89806 -33.37768 -32.68124 -32.05810 -30.55395 -29.12583 -27.19372 -25.01874 -24.37508 -24.03647 -22.98105 -21.59238 -21.29587 -20.53248 -20.03555 -18.85356 -18.03785 -17.49844 -17.42715 -17.09474 -16.80955 -16.58379 -16.39025 -16.10919 -15.76337 -15.47142 -15.29054 -15.02065 -14.89143 -14.69715 -14.55097 -14.48308 -14.15831 -13.59758 -13.42865 -13.16631 -12.98445 -12.68842 -12.47999 -12.13980 -12.02756 -11.84097 -11.53102 -11.31226 -11.05947 -10.84382 -10.77059 -10.52167 -10.28820 -9.99198 -9.41692 -8.73526 -7.89900 -5.37063 0.35819 0.76971 1.47115 1.49288 1.59790 1.94254 2.16041 2.17529 2.48183 2.55355 2.57100 2.83153 3.25179 3.52260 3.83584 3.93289 4.02036 4.10074 4.12031 4.22879 4.31644 4.52853 4.57542 4.66683 4.72914 4.76102 4.85992 4.90229 4.95335 5.11082 5.28045 5.33919 5.46129 5.51414 5.58410 5.64168 5.78881 6.26168 6.28619 6.36726 6.44715 6.68868 7.08015 7.17973 7.35044 7.76186 8.29508 9.16169 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.002101 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.536952 B =13322.640035 C =13553.901041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.296 1.296 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.140 3.860 11 C 0.056 3.944 12 O -0.388 6.388 13 C 0.083 3.917 14 H 0.076 0.924 15 C 0.141 3.859 16 N -0.704 5.704 17 C 0.584 3.416 18 O -0.598 6.598 19 C -0.263 4.263 20 C 0.121 3.879 21 N -0.497 5.497 22 H 0.445 0.555 23 C -0.070 4.070 24 C 0.594 3.406 25 N -0.828 5.828 26 O -0.582 6.582 27 C -0.072 4.072 28 C 0.114 3.886 29 H 0.251 0.749 30 H -0.004 1.004 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.415 0.585 37 H 0.230 0.770 38 H 0.416 0.584 39 H 0.417 0.583 40 H 0.128 0.872 41 H 0.014 0.986 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.451 -18.322 -20.246 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.015 3.985 11 C -0.022 4.022 12 O -0.307 6.307 13 C 0.023 3.977 14 H 0.094 0.906 15 C 0.016 3.984 16 N -0.356 5.356 17 C 0.374 3.626 18 O -0.480 6.480 19 C -0.272 4.272 20 C -0.024 4.024 21 N -0.093 5.093 22 H 0.288 0.712 23 C -0.181 4.181 24 C 0.380 3.620 25 N -0.392 5.392 26 O -0.462 6.462 27 C -0.099 4.099 28 C -0.012 4.012 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.252 0.748 37 H 0.247 0.753 38 H 0.247 0.753 39 H 0.250 0.750 40 H 0.146 0.854 41 H 0.032 0.968 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.375 -19.155 -19.006 27.974 hybrid contribution 0.051 1.403 -0.284 1.432 sum 7.425 -17.752 -19.291 27.247 Atomic orbital electron populations 1.70204 1.06739 1.25954 1.55384 1.25839 0.96106 1.01659 1.01180 0.85149 0.78645 0.79520 0.76752 1.18865 1.21333 1.22327 1.19593 0.93033 0.85489 1.41159 0.90897 1.44362 1.33691 1.01839 1.53807 1.21343 0.87810 0.98594 0.90767 1.23148 1.00907 0.83470 0.94678 1.87813 1.41903 1.31901 1.69095 1.22603 0.87597 0.93810 0.93660 0.90607 1.21157 1.01253 0.86940 0.89017 1.45527 1.71212 1.08070 1.10748 1.17790 0.75282 0.81622 0.87954 1.90759 1.54822 1.76704 1.25708 1.19512 1.19792 0.94619 0.93291 1.23041 0.96750 0.93483 0.89103 1.41564 1.51332 1.06245 1.10199 0.71182 1.19705 1.19056 0.89005 0.90347 1.17108 0.75704 0.85612 0.83553 1.43450 1.73384 1.16639 1.05759 1.90898 1.53220 1.49194 1.52879 1.21061 0.98489 0.94035 0.96267 1.21622 0.98694 0.86388 0.94535 0.93986 0.98626 0.91423 0.87265 0.92594 0.92387 0.89651 0.74754 0.75339 0.75320 0.74984 0.85378 0.96768 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.33 11.14 21.65 0.24 -54.08 16 2 C -0.05 -2.86 4.94 84.86 0.42 -2.44 16 3 Si 0.97 43.44 29.59 68.60 2.03 45.47 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.26 -14.00 9.65 84.03 0.81 -13.19 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 9 N -0.61 -29.94 3.05 -697.57 -2.13 -32.07 16 10 C 0.14 6.54 5.45 86.35 0.47 7.01 16 11 C 0.06 1.89 6.98 72.08 0.50 2.39 16 12 O -0.39 -12.77 10.34 -148.98 -1.54 -14.31 16 13 C 0.08 2.59 2.81 30.69 0.09 2.68 16 14 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.14 4.01 5.34 86.38 0.46 4.47 16 16 N -0.70 -16.31 5.49 -466.40 -2.56 -18.88 16 17 C 0.58 16.22 7.81 86.66 0.68 16.90 16 18 O -0.60 -22.71 16.92 -4.05 -0.07 -22.78 16 19 C -0.26 -5.42 6.13 -20.12 -0.12 -5.54 16 20 C 0.12 1.03 11.43 84.32 0.96 2.00 16 21 N -0.50 -2.68 5.91 -183.36 -1.08 -3.76 16 22 H 0.45 -1.99 8.14 -92.71 -0.75 -2.75 16 23 C -0.07 -1.09 6.99 40.01 0.28 -0.81 16 24 C 0.59 9.82 8.06 86.48 0.70 10.52 16 25 N -0.83 -3.91 8.87 -176.30 -1.56 -5.48 16 26 O -0.58 -16.02 17.69 -4.26 -0.08 -16.10 16 27 C -0.07 -1.70 10.37 22.58 0.23 -1.46 16 28 C 0.11 4.60 6.02 86.35 0.52 5.12 16 29 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.07 3.50 6.14 -2.39 -0.01 3.48 16 32 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 33 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.42 6.66 7.38 -92.71 -0.68 5.98 16 37 H 0.23 -0.12 7.44 -2.91 -0.02 -0.15 16 38 H 0.42 -1.45 7.91 -92.71 -0.73 -2.18 16 39 H 0.42 1.27 8.93 -92.71 -0.83 0.44 16 40 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 Total: -1.00 -87.00 357.45 -2.64 -89.64 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -1.89 Total: 4.70 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 6.00 Total: 27.64 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -7.10 Total: -114.26 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.68 Total: -53.19 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -87.00 -2.64 -89.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035612567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.875 kcal (2) G-P(sol) polarization free energy of solvation -87.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds