Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31235 * 124.05887 * 2 1 4 4 N 1.27339 * 120.04135 * 180.02562 * 3 2 1 5 5 S 1.56632 * 109.73819 * 359.70653 * 4 3 2 6 6 C 1.38244 * 124.05304 * 180.02562 * 2 1 3 7 7 C 1.47174 * 128.48013 * 359.97438 * 6 2 1 8 8 O 1.21620 * 119.99394 * 327.74942 * 7 6 2 9 9 N 1.34771 * 120.00411 * 147.74694 * 7 6 2 10 10 C 1.46595 * 119.75586 * 354.21492 * 9 7 6 11 11 C 1.53881 * 110.71812 * 227.74462 * 10 9 7 12 12 C 1.51983 * 107.29070 * 308.19062 * 11 10 9 13 13 H 1.08990 * 111.56820 * 303.13858 * 12 11 10 14 14 C 1.53707 * 114.99533 * 175.42895 * 12 11 10 15 15 C 1.55300 * 101.81312 * 206.54355 * 14 12 11 16 16 N 1.48164 * 107.04009 * 22.44779 * 15 14 12 17 17 C 1.36935 * 126.39307 * 185.02514 * 16 15 14 18 18 H 1.08003 * 120.00112 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00246 * 359.97089 * 17 16 15 20 20 N 1.31621 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00212 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46681 * 60.00135 * 21 19 17 23 23 H 1.48497 * 109.47452 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47116 * 300.00615 * 21 19 17 25 25 C 1.45496 * 107.20461 * 4.99902 * 16 15 14 26 26 H 1.09006 * 109.56704 * 86.62678 * 25 16 15 27 27 C 1.47798 * 119.75690 * 174.21923 * 9 7 6 28 28 H 1.09003 * 109.47004 * 269.97419 * 1 2 3 29 29 H 1.09005 * 109.46499 * 29.97142 * 1 2 3 30 30 H 1.09001 * 109.47158 * 149.97017 * 1 2 3 31 31 H 1.09007 * 109.22954 * 107.42562 * 10 9 7 32 32 H 1.08998 * 109.22721 * 348.06687 * 10 9 7 33 33 H 1.08999 * 109.89287 * 188.74296 * 11 10 9 34 34 H 1.09001 * 109.95458 * 67.67475 * 11 10 9 35 35 H 1.08995 * 110.95793 * 88.41385 * 14 12 11 36 36 H 1.09000 * 110.99120 * 324.68487 * 14 12 11 37 37 H 1.08995 * 109.91969 * 263.10154 * 15 14 12 38 38 H 1.09000 * 110.08511 * 141.88530 * 15 14 12 39 39 H 0.96997 * 120.00298 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.06150 * 9.52354 * 27 9 7 41 41 H 1.09004 * 110.06218 * 247.96336 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0872 0.0000 4 7 3.5122 0.9980 -0.0005 5 16 3.9366 -0.5097 0.0065 6 6 2.2811 -1.1454 -0.0005 7 6 1.8393 -2.5493 -0.0006 8 8 0.8073 -2.8619 0.5618 9 7 2.5783 -3.4883 -0.6239 10 6 3.7517 -3.0893 -1.4069 11 6 3.7448 -3.7736 -2.7852 12 6 3.5603 -5.2636 -2.5488 13 1 4.3353 -5.6647 -1.8959 14 6 3.4172 -6.1105 -3.8235 15 6 2.5909 -7.3210 -3.3098 16 7 1.8808 -6.8750 -2.0883 17 6 1.1166 -7.6551 -1.2622 18 1 0.6434 -7.2203 -0.3942 19 6 0.9500 -9.0048 -1.5404 20 7 1.5270 -9.5349 -2.5980 21 14 -0.0919 -10.0692 -0.4131 22 1 -1.4779 -9.5376 -0.3721 23 1 -0.1107 -11.4627 -0.9258 24 1 0.4849 -10.0534 0.9552 25 6 2.1476 -5.4534 -1.9303 26 1 1.4189 -4.8793 -2.5026 27 6 2.1997 -4.9126 -0.5131 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3632 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 4.6560 -3.3744 -0.8691 32 1 3.7417 -2.0079 -1.5429 33 1 4.6919 -3.5932 -3.2936 34 1 2.9217 -3.3889 -3.3874 35 1 4.3923 -6.4314 -4.1898 36 1 2.8728 -5.5661 -4.5950 37 1 3.2566 -8.1502 -3.0705 38 1 1.8699 -7.6302 -4.0666 39 1 1.4109 -10.4781 -2.7922 40 1 1.2211 -5.0038 -0.0418 41 1 2.9472 -5.4542 0.0666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041931009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = 75.965933 kcal Electronic energy + Delta-G solvation = -25577.954318 eV Core-core repulsion = 22007.659293 eV Total energy + Delta-G solvation = -3570.295025 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18812 -40.21451 -38.32593 -35.59746 -33.54620 -33.01667 -31.39742 -30.13862 -28.76871 -28.04246 -27.14685 -24.84761 -24.16290 -22.49156 -22.12610 -20.23910 -19.84427 -19.14465 -18.81801 -17.34214 -16.68919 -16.28124 -15.95004 -15.13724 -14.97486 -14.50424 -14.47801 -14.12430 -13.80872 -13.61833 -13.34618 -13.14051 -13.01345 -12.83631 -12.66455 -12.41766 -11.97894 -11.81981 -11.64530 -11.47094 -11.07919 -10.89558 -10.79437 -10.47836 -10.24785 -10.18542 -10.07912 -10.02350 -9.91052 -9.71834 -9.70842 -9.53366 -8.69485 -8.64302 -6.91576 -5.76383 -3.10792 -0.44947 0.53597 1.24773 1.75443 2.64817 2.90975 3.39731 3.44457 3.45364 3.65115 4.22059 4.38862 4.45786 4.62318 4.81516 4.99235 5.06888 5.24576 5.30576 5.38746 5.46678 5.52809 5.56191 5.66796 5.77250 5.88260 5.89241 5.95208 5.99575 6.06720 6.23955 6.34287 6.46278 6.56477 6.64077 6.94931 7.22699 7.43381 7.49784 7.54855 7.76357 7.94017 8.18149 9.13887 9.76931 10.42876 11.35721 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.003692 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.592568 B = 7582.885060 C = 8526.166241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.093 3.907 3 N -0.249 5.249 4 N -0.268 5.268 5 S 0.425 5.575 6 C -0.285 4.285 7 C 0.596 3.404 8 O -0.512 6.512 9 N -0.595 5.595 10 C 0.099 3.901 11 C -0.116 4.116 12 C -0.114 4.114 13 H 0.080 0.920 14 C -0.137 4.137 15 C 0.177 3.823 16 N -0.591 5.591 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.004 4.004 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.156 3.844 26 H 0.025 0.975 27 C 0.118 3.882 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.253 0.747 40 H 0.097 0.903 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 16.615 1.385 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.116 5.116 4 N -0.248 5.248 5 S 0.561 5.439 6 C -0.425 4.425 7 C 0.380 3.620 8 O -0.388 6.388 9 N -0.328 5.328 10 C -0.025 4.025 11 C -0.155 4.155 12 C -0.133 4.133 13 H 0.098 0.902 14 C -0.176 4.176 15 C 0.053 3.947 16 N -0.316 5.316 17 C -0.360 4.360 18 H 0.097 0.903 19 C -0.200 4.200 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.047 3.953 26 H 0.043 0.957 27 C -0.004 4.004 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.115 0.885 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.780 17.317 1.709 19.061 hybrid contribution -1.684 -1.161 0.504 2.106 sum 6.096 16.156 2.213 17.409 Atomic orbital electron populations 1.20419 0.83823 1.04413 1.04519 1.22905 1.00162 0.85141 0.97083 1.70636 0.96986 1.27971 1.16003 1.78765 1.09443 1.16729 1.19864 1.82720 1.09953 1.00318 1.50882 1.27829 0.98136 1.00268 1.16301 1.16543 0.83744 0.81873 0.79856 1.90851 1.22787 1.80306 1.44843 1.48144 1.28119 1.07743 1.48810 1.22019 0.88272 0.98629 0.93621 1.21775 1.02622 0.96195 0.94903 1.22284 0.99164 0.92937 0.98953 0.90156 1.22724 1.00185 0.98653 0.96010 1.21558 0.93604 0.91948 0.87623 1.44156 1.57363 1.02404 1.27691 1.18987 1.22619 0.90066 1.04335 0.90277 1.24781 1.00427 0.96818 0.98021 1.69927 1.47268 1.12252 1.27335 0.86223 0.80174 0.79616 0.79917 1.21059 1.21605 1.21070 1.20986 0.93522 0.88086 0.92721 0.95746 1.21886 1.02509 0.76287 0.99696 0.89004 0.89776 0.89081 0.90496 0.91460 0.90367 0.91178 0.92105 0.92511 0.92564 0.94325 0.93646 0.88466 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 9.81 36.00 0.35 -0.37 16 2 C 0.09 1.14 7.00 -82.85 -0.58 0.56 16 3 N -0.25 -3.20 11.54 33.42 0.39 -2.81 16 4 N -0.27 -3.23 12.51 60.35 0.75 -2.48 16 5 S 0.42 4.11 20.41 -107.50 -2.19 1.92 16 6 C -0.28 -3.51 5.86 -35.95 -0.21 -3.72 16 7 C 0.60 8.81 7.41 -12.63 -0.09 8.71 16 8 O -0.51 -9.12 15.37 5.26 0.08 -9.04 16 9 N -0.59 -8.43 3.01 -174.11 -0.52 -8.96 16 10 C 0.10 1.07 5.43 -3.53 -0.02 1.05 16 11 C -0.12 -1.35 5.72 -26.79 -0.15 -1.50 16 12 C -0.11 -1.76 2.61 -89.51 -0.23 -1.99 16 13 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 14 C -0.14 -2.33 6.54 -25.14 -0.16 -2.50 16 15 C 0.18 4.05 5.45 -1.91 -0.01 4.03 16 16 N -0.59 -14.20 3.35 -162.91 -0.55 -14.75 16 17 C -0.23 -6.19 9.88 -15.06 -0.15 -6.33 16 18 H 0.08 2.05 7.41 -52.48 -0.39 1.66 16 19 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 20 N -0.92 -26.21 10.43 55.49 0.58 -25.63 16 21 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.16 2.99 2.75 -67.83 -0.19 2.80 16 26 H 0.03 0.52 7.93 -51.93 -0.41 0.10 16 27 C 0.12 2.04 5.70 -3.95 -0.02 2.02 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.00 7.42 -51.93 -0.39 0.61 16 31 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.63 4.39 -33.72 -0.15 0.48 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.06 1.43 7.21 -51.93 -0.37 1.05 16 38 H 0.04 0.98 7.76 -51.93 -0.40 0.58 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.10 1.90 6.74 -51.93 -0.35 1.55 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -31.03 337.41 -8.36 -39.39 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.39 Total: -1.98 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.57 Total: 2.56 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.65 Total: -54.63 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -2.19 Total: 1.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.03 -8.36 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041931009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.359 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds