Wall clock time and date at job start Fri Apr 10 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31235 * 124.05887 * 2 1 4 4 N 1.27339 * 120.04135 * 180.02562 * 3 2 1 5 5 S 1.56632 * 109.73819 * 359.70653 * 4 3 2 6 6 C 1.38244 * 124.05304 * 180.02562 * 2 1 3 7 7 C 1.47174 * 128.48013 * 359.97438 * 6 2 1 8 8 O 1.21620 * 119.99394 * 327.74942 * 7 6 2 9 9 N 1.34771 * 120.00411 * 147.74694 * 7 6 2 10 10 C 1.46595 * 119.75586 * 354.21492 * 9 7 6 11 11 C 1.53881 * 110.71812 * 227.74462 * 10 9 7 12 12 C 1.51983 * 107.29070 * 308.19062 * 11 10 9 13 13 H 1.08990 * 111.56820 * 303.13858 * 12 11 10 14 14 C 1.53707 * 114.99533 * 175.42895 * 12 11 10 15 15 C 1.55300 * 101.81312 * 206.54355 * 14 12 11 16 16 N 1.48164 * 107.04009 * 22.44779 * 15 14 12 17 17 C 1.36935 * 126.39307 * 185.02514 * 16 15 14 18 18 H 1.08003 * 120.00112 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00246 * 359.97089 * 17 16 15 20 20 N 1.31621 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00212 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46681 * 60.00135 * 21 19 17 23 23 H 1.48497 * 109.47452 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47116 * 300.00615 * 21 19 17 25 25 C 1.45496 * 107.20461 * 4.99902 * 16 15 14 26 26 H 1.09006 * 109.56704 * 86.62678 * 25 16 15 27 27 C 1.47798 * 119.75690 * 174.21923 * 9 7 6 28 28 H 1.09003 * 109.47004 * 269.97419 * 1 2 3 29 29 H 1.09005 * 109.46499 * 29.97142 * 1 2 3 30 30 H 1.09001 * 109.47158 * 149.97017 * 1 2 3 31 31 H 1.09007 * 109.22954 * 107.42562 * 10 9 7 32 32 H 1.08998 * 109.22721 * 348.06687 * 10 9 7 33 33 H 1.08999 * 109.89287 * 188.74296 * 11 10 9 34 34 H 1.09001 * 109.95458 * 67.67475 * 11 10 9 35 35 H 1.08995 * 110.95793 * 88.41385 * 14 12 11 36 36 H 1.09000 * 110.99120 * 324.68487 * 14 12 11 37 37 H 1.08995 * 109.91969 * 263.10154 * 15 14 12 38 38 H 1.09000 * 110.08511 * 141.88530 * 15 14 12 39 39 H 0.96997 * 120.00298 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.06150 * 9.52354 * 27 9 7 41 41 H 1.09004 * 110.06218 * 247.96336 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0872 0.0000 4 7 3.5122 0.9980 -0.0005 5 16 3.9366 -0.5097 0.0065 6 6 2.2811 -1.1454 -0.0005 7 6 1.8393 -2.5493 -0.0006 8 8 0.8073 -2.8619 0.5618 9 7 2.5783 -3.4883 -0.6239 10 6 3.7517 -3.0893 -1.4069 11 6 3.7448 -3.7736 -2.7852 12 6 3.5603 -5.2636 -2.5488 13 1 4.3353 -5.6647 -1.8959 14 6 3.4172 -6.1105 -3.8235 15 6 2.5909 -7.3210 -3.3098 16 7 1.8808 -6.8750 -2.0883 17 6 1.1166 -7.6551 -1.2622 18 1 0.6434 -7.2203 -0.3942 19 6 0.9500 -9.0048 -1.5404 20 7 1.5270 -9.5349 -2.5980 21 14 -0.0919 -10.0692 -0.4131 22 1 -1.4779 -9.5376 -0.3721 23 1 -0.1107 -11.4627 -0.9258 24 1 0.4849 -10.0534 0.9552 25 6 2.1476 -5.4534 -1.9303 26 1 1.4189 -4.8793 -2.5026 27 6 2.1997 -4.9126 -0.5131 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3632 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 4.6560 -3.3744 -0.8691 32 1 3.7417 -2.0079 -1.5429 33 1 4.6919 -3.5932 -3.2936 34 1 2.9217 -3.3889 -3.3874 35 1 4.3923 -6.4314 -4.1898 36 1 2.8728 -5.5661 -4.5950 37 1 3.2566 -8.1502 -3.0705 38 1 1.8699 -7.6302 -4.0666 39 1 1.4109 -10.4781 -2.7922 40 1 1.2211 -5.0038 -0.0418 41 1 2.9472 -5.4542 0.0666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041931009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:10 Heat of formation + Delta-G solvation = 55.446993 kcal Electronic energy + Delta-G solvation = -25578.844086 eV Core-core repulsion = 22007.659293 eV Total energy + Delta-G solvation = -3571.184793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13906 -41.40436 -39.69460 -36.98519 -34.70768 -34.44503 -32.92639 -31.48088 -30.30822 -29.15300 -28.04914 -26.56426 -25.55524 -23.70511 -23.21697 -21.81161 -21.27639 -20.26208 -19.71300 -18.72187 -18.17179 -17.39961 -17.13635 -16.67583 -16.37047 -15.81140 -15.73462 -15.46363 -15.23005 -14.81808 -14.51092 -14.22163 -14.06518 -13.85676 -13.84823 -13.63525 -13.51359 -13.15546 -13.07678 -12.73465 -12.66013 -12.57711 -12.18817 -12.03137 -11.75203 -11.59902 -11.51637 -11.40530 -11.16216 -11.04013 -10.83976 -10.70482 -10.58148 -9.85171 -8.89691 -7.84820 -5.19687 -1.36440 -0.34075 0.38168 0.81939 1.45974 1.48013 1.52432 1.55095 1.79757 2.50451 2.75835 3.22564 3.33802 3.46560 3.51193 3.70087 3.89046 3.94210 4.19048 4.21009 4.24756 4.31980 4.45149 4.59190 4.61436 4.66388 4.69585 4.78521 4.84185 4.88750 5.08721 5.09797 5.14692 5.21714 5.30889 5.49224 5.58308 5.68357 5.80549 6.11669 6.20570 6.54513 6.80550 7.09393 7.78060 8.44613 9.25833 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.003692 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.592568 B = 7582.885060 C = 8526.166241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.095 3.905 3 N -0.270 5.270 4 N -0.289 5.289 5 S 0.521 5.479 6 C -0.315 4.315 7 C 0.598 3.402 8 O -0.553 6.553 9 N -0.593 5.593 10 C 0.091 3.909 11 C -0.108 4.108 12 C -0.096 4.096 13 H 0.085 0.915 14 C -0.122 4.122 15 C 0.180 3.820 16 N -0.612 5.612 17 C -0.237 4.237 18 H 0.078 0.922 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.970 3.030 22 H -0.283 1.283 23 H -0.293 1.293 24 H -0.276 1.276 25 C 0.146 3.854 26 H 0.008 0.992 27 C 0.131 3.869 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.024 0.976 38 H -0.002 1.002 39 H 0.247 0.753 40 H 0.066 0.934 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 18.883 1.529 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.135 5.135 4 N -0.270 5.270 5 S 0.658 5.342 6 C -0.455 4.455 7 C 0.383 3.617 8 O -0.432 6.432 9 N -0.326 5.326 10 C -0.031 4.031 11 C -0.147 4.147 12 C -0.116 4.116 13 H 0.103 0.897 14 C -0.160 4.160 15 C 0.055 3.945 16 N -0.337 5.337 17 C -0.366 4.366 18 H 0.096 0.904 19 C -0.253 4.253 20 N -0.597 5.597 21 Si 0.798 3.202 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.202 1.202 25 C 0.038 3.962 26 H 0.026 0.974 27 C 0.008 3.992 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.016 0.984 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.132 19.647 1.850 22.183 hybrid contribution -2.365 -1.830 0.453 3.025 sum 7.767 17.817 2.303 19.572 Atomic orbital electron populations 1.20460 0.83187 1.04644 1.04915 1.23137 1.00876 0.85057 0.96200 1.70717 0.97201 1.28226 1.17358 1.78530 1.09474 1.18821 1.20138 1.82293 1.06539 0.97682 1.47707 1.27583 1.00635 0.98827 1.18486 1.16783 0.83071 0.82776 0.79042 1.90827 1.24610 1.81219 1.46516 1.48125 1.29086 1.06176 1.49183 1.22361 0.87816 0.99738 0.93178 1.21782 1.04730 0.92538 0.95604 1.22215 0.96229 0.95753 0.97378 0.89658 1.22594 1.00359 0.96173 0.96867 1.21370 0.92661 0.93966 0.86477 1.44415 1.57164 1.04402 1.27741 1.19293 1.22354 0.90598 1.04388 0.90380 1.25524 1.02121 0.98122 0.99570 1.70135 1.48788 1.11881 1.28889 0.85288 0.78698 0.77674 0.78525 1.20889 1.21940 1.20169 1.21141 0.95732 0.85211 0.94086 0.97437 1.21460 1.01146 0.78447 0.98119 0.88517 0.87945 0.90348 0.87439 0.89542 0.86133 0.91639 0.89394 0.91378 0.95790 0.98404 0.94417 0.91541 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 9.81 71.24 0.70 -0.72 16 2 C 0.09 2.16 7.00 42.65 0.30 2.46 16 3 N -0.27 -6.36 11.54 -48.19 -0.56 -6.91 16 4 N -0.29 -6.12 12.51 37.02 0.46 -5.66 16 5 S 0.52 8.10 20.41 -56.49 -1.15 6.94 16 6 C -0.32 -7.12 5.86 24.62 0.14 -6.97 16 7 C 0.60 17.10 7.41 86.59 0.64 17.74 16 8 O -0.55 -20.09 15.37 -4.09 -0.06 -20.15 16 9 N -0.59 -15.79 3.01 -823.00 -2.48 -18.26 16 10 C 0.09 1.59 5.43 86.66 0.47 2.06 16 11 C -0.11 -2.02 5.72 30.56 0.17 -1.85 16 12 C -0.10 -2.73 2.61 -10.07 -0.03 -2.76 16 13 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 14 C -0.12 -3.92 6.54 31.62 0.21 -3.72 16 15 C 0.18 8.48 5.45 86.85 0.47 8.95 16 16 N -0.61 -30.28 3.35 -669.32 -2.24 -32.53 16 17 C -0.24 -13.09 9.88 84.03 0.83 -12.26 16 18 H 0.08 4.20 7.41 -2.91 -0.02 4.18 16 19 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 20 N -0.95 -56.25 10.43 21.65 0.23 -56.03 16 21 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 C 0.15 5.60 2.75 45.60 0.13 5.72 16 26 H 0.01 0.34 7.93 -2.38 -0.02 0.32 16 27 C 0.13 4.55 5.70 85.73 0.49 5.03 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.08 1.74 7.42 -2.39 -0.02 1.72 16 31 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.09 1.19 4.39 -13.97 -0.06 1.13 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.35 7.98 -2.39 -0.02 1.33 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 37 H 0.02 1.26 7.21 -2.39 -0.02 1.24 16 38 H 0.00 -0.13 7.76 -2.39 -0.02 -0.14 16 39 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.07 2.71 6.74 -2.39 -0.02 2.69 16 41 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -72.13 337.41 2.22 -69.91 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.00 Total: 4.00 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 4.99 Total: 10.79 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -4.59 Total: -119.39 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.06 Total: -20.15 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 8.10 SS G_CDS: -1.15 Total: 6.94 kcal Total: -72.13 2.22 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041931009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.353 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds