Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00445 * 2 1 4 4 H 1.48506 * 109.47141 * 274.99063 * 3 2 1 5 5 H 1.48502 * 109.46593 * 34.98780 * 3 2 1 6 6 H 1.48497 * 109.47292 * 154.98736 * 3 2 1 7 7 C 1.38820 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00171 * 186.96475 * 7 2 1 9 9 N 1.36937 * 119.99853 * 6.96419 * 7 2 1 10 10 C 1.46659 * 125.33315 * 354.11235 * 9 7 2 11 11 C 1.53681 * 107.96828 * 180.67108 * 10 9 7 12 12 H 1.09007 * 112.77064 * 253.97612 * 11 10 9 13 13 C 1.54160 * 109.50717 * 126.92797 * 11 10 9 14 14 N 1.46752 * 106.58620 * 277.93387 * 13 11 10 15 15 C 1.34774 * 125.33365 * 161.45971 * 14 13 11 16 16 O 1.21285 * 119.99827 * 179.69211 * 15 14 13 17 17 C 1.50695 * 120.00293 * 359.69260 * 15 14 13 18 18 H 1.09007 * 109.46191 * 40.01887 * 17 15 14 19 19 C 1.53017 * 109.45047 * 280.05030 * 17 15 14 20 20 C 1.50803 * 109.18646 * 286.67278 * 19 17 15 21 21 O 1.21238 * 120.01596 * 146.03437 * 20 19 17 22 22 N 1.34560 * 119.96891 * 325.75881 * 20 19 17 23 23 C 1.34346 * 120.98436 * 4.45664 * 22 20 19 24 24 O 1.21532 * 119.20979 * 192.02056 * 23 22 20 25 25 N 1.34299 * 121.57989 * 11.99917 * 23 22 20 26 26 C 1.46661 * 109.33068 * 341.19448 * 14 13 11 27 27 C 1.53672 * 107.96874 * 0.95214 * 26 14 13 28 28 H 1.08996 * 112.77308 * 253.25493 * 27 26 14 29 29 C 1.46761 * 125.33614 * 174.06799 * 9 7 2 30 30 H 0.96995 * 119.99549 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.76872 * 300.29599 * 10 9 7 32 32 H 1.08996 * 109.77038 * 61.02618 * 10 9 7 33 33 H 1.08998 * 110.16117 * 158.59874 * 13 11 10 34 34 H 1.09009 * 109.96036 * 37.15525 * 13 11 10 35 35 H 1.09004 * 109.52775 * 166.75436 * 19 17 15 36 36 H 1.09006 * 109.51185 * 46.58037 * 19 17 15 37 37 H 0.96993 * 119.51116 * 184.44023 * 22 20 19 38 38 H 0.97000 * 119.53082 * 185.71259 * 25 23 22 39 39 H 1.08996 * 109.76437 * 120.58364 * 26 14 13 40 40 H 1.09002 * 109.76391 * 241.32059 * 26 14 13 41 41 H 1.08998 * 110.01140 * 42.28697 * 29 9 7 42 42 H 1.09003 * 110.01672 * 280.90302 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6198 0.8028 6 1 3.5966 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0842 -1.2058 0.1129 9 7 1.3331 -2.3837 -0.1449 10 6 -0.1260 -2.5256 -0.1843 11 6 -0.4530 -4.0190 -0.3410 12 1 -0.7973 -4.2726 -1.3437 13 6 -1.4354 -4.4499 0.7662 14 7 -0.6287 -4.7079 1.9647 15 6 -1.1012 -4.7605 3.2258 16 8 -0.3460 -4.9870 4.1474 17 6 -2.5679 -4.5378 3.4909 18 1 -3.1558 -5.0295 2.7157 19 6 -2.8653 -3.0369 3.4813 20 6 -2.3169 -2.4149 4.7409 21 8 -1.8754 -1.2861 4.7173 22 7 -2.3230 -3.1114 5.8922 23 6 -2.7301 -4.3913 5.9241 24 8 -2.9334 -4.9224 6.9981 25 7 -2.9181 -5.0978 4.7975 26 6 0.7711 -4.9058 1.5744 27 6 0.8656 -4.7429 0.0493 28 1 1.0122 -5.6909 -0.4680 29 6 1.9538 -3.7061 -0.2852 30 1 -0.4849 0.8400 0.0004 31 1 -0.5583 -2.1489 0.7427 32 1 -0.5278 -1.9692 -1.0311 33 1 -1.9625 -5.3564 0.4689 34 1 -2.1494 -3.6498 0.9621 35 1 -3.9430 -2.8793 3.4366 36 1 -2.3929 -2.5777 2.6128 37 1 -2.0290 -2.6831 6.7112 38 1 -3.2914 -5.9915 4.8504 39 1 1.3990 -4.1618 2.0644 40 1 1.0950 -5.9069 1.8591 41 1 2.7875 -3.8026 0.4103 42 1 2.3025 -3.8480 -1.3082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049087298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -53.007035 kcal Electronic energy + Delta-G solvation = -28926.001134 eV Core-core repulsion = 24907.360551 eV Total energy + Delta-G solvation = -4018.640584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92364 -40.20692 -38.83976 -38.38959 -35.88776 -35.07992 -34.31451 -32.47299 -31.16787 -30.29236 -29.57982 -26.58388 -25.68979 -24.97994 -23.53804 -23.03839 -20.73184 -20.10244 -19.59355 -19.50024 -18.22559 -17.74460 -17.27987 -16.88005 -16.42226 -16.16892 -15.94006 -15.34830 -14.99550 -14.66963 -14.55114 -14.20035 -13.75826 -13.74684 -13.35402 -13.15333 -13.07492 -12.42485 -12.40370 -12.19784 -12.03536 -11.68515 -11.44377 -10.96280 -10.90562 -10.82032 -10.51188 -10.48478 -10.29110 -10.23461 -10.18468 -10.11065 -9.95073 -9.70329 -9.35539 -8.62649 -8.50820 -6.87383 -5.77887 -3.09372 1.68894 2.27896 2.49206 2.78090 3.12907 3.19390 3.39791 3.45660 3.47781 4.08278 4.15908 4.29192 4.47936 4.63839 4.67160 4.85741 5.02665 5.12586 5.17930 5.31859 5.46960 5.50063 5.57273 5.61934 5.79886 5.94543 6.05554 6.10996 6.16358 6.22317 6.32078 6.47773 6.54558 6.57474 6.73135 7.13049 7.41916 7.45975 7.49926 7.54970 7.75150 8.03867 8.09688 8.21886 9.18325 9.78628 10.41255 11.34642 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.004752 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.769273 B = 5890.880928 C = 7112.674627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.185 3.815 11 C -0.123 4.123 12 H 0.096 0.904 13 C 0.103 3.897 14 N -0.597 5.597 15 C 0.505 3.495 16 O -0.528 6.528 17 C 0.126 3.874 18 H 0.133 0.867 19 C -0.152 4.152 20 C 0.521 3.479 21 O -0.480 6.480 22 N -0.672 5.672 23 C 0.728 3.272 24 O -0.561 6.561 25 N -0.707 5.707 26 C 0.122 3.878 27 C -0.111 4.111 28 H 0.091 0.909 29 C 0.144 3.856 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.426 0.574 38 H 0.426 0.574 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 -12.538 1.203 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.060 3.940 11 C -0.142 4.142 12 H 0.114 0.886 13 C -0.020 4.020 14 N -0.331 5.331 15 C 0.290 3.710 16 O -0.404 6.404 17 C 0.016 3.984 18 H 0.151 0.849 19 C -0.193 4.193 20 C 0.308 3.692 21 O -0.349 6.349 22 N -0.342 5.342 23 C 0.428 3.572 24 O -0.437 6.437 25 N -0.365 5.365 26 C 0.000 4.000 27 C -0.131 4.131 28 H 0.109 0.891 29 C 0.017 3.983 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.267 0.733 38 H 0.265 0.735 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -9.300 -11.989 2.185 15.330 hybrid contribution 0.521 0.718 0.144 0.898 sum -8.779 -11.271 2.330 14.476 Atomic orbital electron populations 1.69917 1.04887 1.25170 1.56567 1.24769 0.95713 0.97643 1.01744 0.86134 0.78809 0.83647 0.77422 1.21589 1.21680 1.20640 1.19020 0.91134 0.82417 1.43512 0.90449 1.44167 1.01351 1.01126 1.86090 1.21070 0.85004 0.86734 1.01204 1.23259 0.93540 1.00256 0.97194 0.88597 1.22215 0.94581 1.00056 0.85114 1.48158 1.10269 1.69064 1.05569 1.20492 0.90302 0.78309 0.81919 1.90755 1.58540 1.48538 1.42532 1.21042 0.94496 0.95351 0.87511 0.84932 1.22303 1.05626 0.93060 0.98298 1.20741 0.77465 0.86148 0.84861 1.90877 1.41029 1.18160 1.84880 1.44172 1.64058 1.12431 1.13544 1.15499 0.76550 0.80795 0.84356 1.91014 1.55770 1.69264 1.27605 1.44722 1.67898 1.20137 1.03772 1.21843 0.82099 1.00979 0.95090 1.22877 0.97469 0.98943 0.93824 0.89063 1.21238 0.93681 0.85530 0.97830 0.93684 0.93624 0.93348 0.91610 0.90341 0.85356 0.84371 0.73267 0.73465 0.90481 0.92152 0.94500 0.96101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.90 10.30 55.49 0.57 -25.33 16 2 C 0.00 -0.05 5.48 -17.43 -0.10 -0.15 16 3 Si 0.91 22.08 29.56 -169.99 -5.02 17.06 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.31 10.24 -15.06 -0.15 -6.46 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.60 -14.31 3.38 -171.88 -0.58 -14.89 16 10 C 0.18 3.94 4.79 -3.60 -0.02 3.92 16 11 C -0.12 -1.81 4.08 -88.38 -0.36 -2.17 16 12 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 13 C 0.10 1.19 5.47 -3.30 -0.02 1.17 16 14 N -0.60 -8.42 3.31 -172.23 -0.57 -8.99 16 15 C 0.50 7.28 6.72 -10.99 -0.07 7.21 16 16 O -0.53 -9.81 16.46 5.55 0.09 -9.72 16 17 C 0.13 1.22 2.95 -69.13 -0.20 1.01 16 18 H 0.13 0.69 7.65 -51.92 -0.40 0.29 16 19 C -0.15 -1.62 5.48 -27.82 -0.15 -1.78 16 20 C 0.52 7.67 7.44 -11.03 -0.08 7.59 16 21 O -0.48 -9.18 17.93 5.59 0.10 -9.08 16 22 N -0.67 -9.12 5.18 -16.02 -0.08 -9.20 16 23 C 0.73 9.81 7.98 -87.73 -0.70 9.11 16 24 O -0.56 -9.09 17.97 5.34 0.10 -9.00 16 25 N -0.71 -7.20 4.91 -60.12 -0.29 -7.49 16 26 C 0.12 1.91 6.24 -3.61 -0.02 1.88 16 27 C -0.11 -1.63 4.08 -88.48 -0.36 -1.99 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 C 0.14 2.71 6.40 -3.39 -0.02 2.69 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.05 1.10 6.87 -51.93 -0.36 0.74 16 32 H 0.05 1.17 7.32 -51.93 -0.38 0.79 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.84 5.89 -51.92 -0.31 0.54 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.14 1.70 6.66 -51.93 -0.35 1.36 16 37 H 0.43 5.41 8.86 -40.82 -0.36 5.04 16 38 H 0.43 3.27 8.90 -40.82 -0.36 2.91 16 39 H 0.08 1.50 7.47 -51.93 -0.39 1.11 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.70 7.78 -51.93 -0.40 0.30 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -37.09 340.06 -8.22 -45.30 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.39 Total: 4.16 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: -2.26 Total: 22.04 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.96 Total: -65.89 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: 0.29 Total: -27.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.09 -8.22 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049087298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.702 kcal (2) G-P(sol) polarization free energy of solvation -37.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds