Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00445 * 2 1 4 4 H 1.48506 * 109.47141 * 274.99063 * 3 2 1 5 5 H 1.48502 * 109.46593 * 34.98780 * 3 2 1 6 6 H 1.48497 * 109.47292 * 154.98736 * 3 2 1 7 7 C 1.38820 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00171 * 186.96475 * 7 2 1 9 9 N 1.36937 * 119.99853 * 6.96419 * 7 2 1 10 10 C 1.46659 * 125.33315 * 354.11235 * 9 7 2 11 11 C 1.53681 * 107.96828 * 180.67108 * 10 9 7 12 12 H 1.09007 * 112.77064 * 253.97612 * 11 10 9 13 13 C 1.54160 * 109.50717 * 126.92797 * 11 10 9 14 14 N 1.46752 * 106.58620 * 277.93387 * 13 11 10 15 15 C 1.34774 * 125.33365 * 161.45971 * 14 13 11 16 16 O 1.21285 * 119.99827 * 179.69211 * 15 14 13 17 17 C 1.50695 * 120.00293 * 359.69260 * 15 14 13 18 18 H 1.09007 * 109.46191 * 40.01887 * 17 15 14 19 19 C 1.53017 * 109.45047 * 280.05030 * 17 15 14 20 20 C 1.50803 * 109.18646 * 286.67278 * 19 17 15 21 21 O 1.21238 * 120.01596 * 146.03437 * 20 19 17 22 22 N 1.34560 * 119.96891 * 325.75881 * 20 19 17 23 23 C 1.34346 * 120.98436 * 4.45664 * 22 20 19 24 24 O 1.21532 * 119.20979 * 192.02056 * 23 22 20 25 25 N 1.34299 * 121.57989 * 11.99917 * 23 22 20 26 26 C 1.46661 * 109.33068 * 341.19448 * 14 13 11 27 27 C 1.53672 * 107.96874 * 0.95214 * 26 14 13 28 28 H 1.08996 * 112.77308 * 253.25493 * 27 26 14 29 29 C 1.46761 * 125.33614 * 174.06799 * 9 7 2 30 30 H 0.96995 * 119.99549 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.76872 * 300.29599 * 10 9 7 32 32 H 1.08996 * 109.77038 * 61.02618 * 10 9 7 33 33 H 1.08998 * 110.16117 * 158.59874 * 13 11 10 34 34 H 1.09009 * 109.96036 * 37.15525 * 13 11 10 35 35 H 1.09004 * 109.52775 * 166.75436 * 19 17 15 36 36 H 1.09006 * 109.51185 * 46.58037 * 19 17 15 37 37 H 0.96993 * 119.51116 * 184.44023 * 22 20 19 38 38 H 0.97000 * 119.53082 * 185.71259 * 25 23 22 39 39 H 1.08996 * 109.76437 * 120.58364 * 26 14 13 40 40 H 1.09002 * 109.76391 * 241.32059 * 26 14 13 41 41 H 1.08998 * 110.01140 * 42.28697 * 29 9 7 42 42 H 1.09003 * 110.01672 * 280.90302 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6198 0.8028 6 1 3.5966 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0842 -1.2058 0.1129 9 7 1.3331 -2.3837 -0.1449 10 6 -0.1260 -2.5256 -0.1843 11 6 -0.4530 -4.0190 -0.3410 12 1 -0.7973 -4.2726 -1.3437 13 6 -1.4354 -4.4499 0.7662 14 7 -0.6287 -4.7079 1.9647 15 6 -1.1012 -4.7605 3.2258 16 8 -0.3460 -4.9870 4.1474 17 6 -2.5679 -4.5378 3.4909 18 1 -3.1558 -5.0295 2.7157 19 6 -2.8653 -3.0369 3.4813 20 6 -2.3169 -2.4149 4.7409 21 8 -1.8754 -1.2861 4.7173 22 7 -2.3230 -3.1114 5.8922 23 6 -2.7301 -4.3913 5.9241 24 8 -2.9334 -4.9224 6.9981 25 7 -2.9181 -5.0978 4.7975 26 6 0.7711 -4.9058 1.5744 27 6 0.8656 -4.7429 0.0493 28 1 1.0122 -5.6909 -0.4680 29 6 1.9538 -3.7061 -0.2852 30 1 -0.4849 0.8400 0.0004 31 1 -0.5583 -2.1489 0.7427 32 1 -0.5278 -1.9692 -1.0311 33 1 -1.9625 -5.3564 0.4689 34 1 -2.1494 -3.6498 0.9621 35 1 -3.9430 -2.8793 3.4366 36 1 -2.3929 -2.5777 2.6128 37 1 -2.0290 -2.6831 6.7112 38 1 -3.2914 -5.9915 4.8504 39 1 1.3990 -4.1618 2.0644 40 1 1.0950 -5.9069 1.8591 41 1 2.7875 -3.8026 0.4103 42 1 2.3025 -3.8480 -1.3082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049087298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -84.758978 kcal Electronic energy + Delta-G solvation = -28927.378002 eV Core-core repulsion = 24907.360551 eV Total energy + Delta-G solvation = -4020.017451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.98172 -41.39891 -40.04649 -39.66283 -36.98789 -36.57974 -35.42728 -34.17759 -32.28541 -31.62035 -31.05976 -27.87691 -27.19388 -26.32353 -24.65150 -24.41052 -21.99390 -21.49507 -20.85945 -20.55528 -19.28246 -18.97307 -18.65498 -18.31475 -17.54595 -17.32289 -17.09703 -16.69405 -16.40170 -15.99391 -15.76999 -15.56383 -15.41686 -14.86576 -14.58668 -14.38975 -14.29751 -13.72062 -13.57024 -13.42395 -13.35444 -13.28618 -12.93391 -12.73620 -12.70020 -12.02042 -12.00211 -11.85809 -11.72570 -11.62766 -11.52493 -11.44214 -11.43889 -11.27471 -10.66516 -10.35575 -9.63373 -8.81894 -7.87097 -5.17527 0.55853 1.29076 1.42339 1.43354 1.43821 1.51468 1.73718 2.09944 2.21108 2.48216 3.16795 3.25045 3.32175 3.37258 3.47965 3.71929 3.85685 3.99690 4.02168 4.12488 4.29771 4.36861 4.40958 4.59400 4.72488 4.77741 4.80715 4.91635 5.00756 5.05337 5.09434 5.15441 5.25249 5.45170 5.48616 5.73133 5.75723 5.84911 6.10226 6.25538 6.36537 6.47361 6.97150 7.06466 7.15615 7.84306 8.43220 9.22641 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.004752 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.769273 B = 5890.880928 C = 7112.674627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 0.963 3.037 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.625 5.625 10 C 0.191 3.809 11 C -0.111 4.111 12 H 0.130 0.870 13 C 0.102 3.898 14 N -0.598 5.598 15 C 0.494 3.506 16 O -0.581 6.581 17 C 0.139 3.861 18 H 0.200 0.800 19 C -0.147 4.147 20 C 0.516 3.484 21 O -0.539 6.539 22 N -0.673 5.673 23 C 0.726 3.274 24 O -0.591 6.591 25 N -0.687 5.687 26 C 0.123 3.877 27 C -0.091 4.091 28 H 0.140 0.860 29 C 0.134 3.866 30 H 0.246 0.754 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.180 0.820 36 H 0.123 0.877 37 H 0.424 0.576 38 H 0.441 0.559 39 H 0.023 0.977 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.901 -15.459 -0.607 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.352 5.352 10 C 0.066 3.934 11 C -0.131 4.131 12 H 0.148 0.852 13 C -0.019 4.019 14 N -0.331 5.331 15 C 0.281 3.719 16 O -0.461 6.461 17 C 0.031 3.969 18 H 0.217 0.783 19 C -0.187 4.187 20 C 0.305 3.695 21 O -0.413 6.413 22 N -0.341 5.341 23 C 0.426 3.574 24 O -0.469 6.469 25 N -0.346 5.346 26 C 0.000 4.000 27 C -0.111 4.111 28 H 0.158 0.842 29 C 0.008 3.992 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.197 0.803 36 H 0.142 0.858 37 H 0.265 0.735 38 H 0.284 0.716 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.439 -14.980 0.324 18.851 hybrid contribution 1.309 1.638 0.718 2.216 sum -10.129 -13.342 1.042 16.784 Atomic orbital electron populations 1.70109 1.05699 1.25021 1.57693 1.25451 0.96605 1.00291 1.02571 0.85288 0.77790 0.80250 0.77433 1.20781 1.22539 1.20117 1.19298 0.91316 0.84300 1.42541 0.91117 1.44493 1.02952 1.01973 1.85766 1.20880 0.83285 0.91435 0.97756 1.23199 0.94647 0.94807 1.00416 0.85175 1.22491 0.93565 1.03231 0.82602 1.48288 1.09855 1.68378 1.06531 1.21431 0.92128 0.77129 0.81249 1.90739 1.60377 1.50928 1.44022 1.21276 0.91961 0.95100 0.88612 0.78273 1.22424 1.08215 0.93105 0.94971 1.21623 0.76202 0.85490 0.86161 1.90852 1.43890 1.20765 1.85779 1.44241 1.63530 1.12784 1.13546 1.15656 0.76262 0.80554 0.84915 1.90997 1.57152 1.69696 1.29038 1.44622 1.66515 1.20462 1.03026 1.21704 0.82777 1.00107 0.95458 1.22874 0.95449 0.99466 0.93275 0.84186 1.21469 0.94946 0.84827 0.97933 0.94455 0.97306 0.96971 0.85459 0.89317 0.80274 0.85842 0.73499 0.71612 0.95875 0.90464 0.95736 0.95085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.82 10.30 21.65 0.22 -54.60 16 2 C -0.05 -3.14 5.48 84.86 0.46 -2.67 16 3 Si 0.96 46.77 29.56 68.60 2.03 48.80 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.25 -13.77 10.24 84.04 0.86 -12.91 16 8 H 0.07 3.92 7.84 -2.91 -0.02 3.90 16 9 N -0.63 -30.47 3.38 -697.70 -2.35 -32.82 16 10 C 0.19 8.18 4.79 86.58 0.42 8.59 16 11 C -0.11 -2.87 4.08 -9.34 -0.04 -2.91 16 12 H 0.13 2.58 8.14 -2.38 -0.02 2.56 16 13 C 0.10 1.84 5.47 86.72 0.47 2.31 16 14 N -0.60 -15.12 3.31 -817.19 -2.70 -17.82 16 15 C 0.49 13.11 6.72 87.66 0.59 13.70 16 16 O -0.58 -21.43 16.46 -3.05 -0.05 -21.48 16 17 C 0.14 2.12 2.95 44.27 0.13 2.25 16 18 H 0.20 0.50 7.65 -2.38 -0.02 0.48 16 19 C -0.15 -2.74 5.48 29.89 0.16 -2.58 16 20 C 0.52 15.25 7.44 87.72 0.65 15.91 16 21 O -0.54 -21.71 17.93 -2.90 -0.05 -21.76 16 22 N -0.67 -18.41 5.18 -441.64 -2.29 -20.69 16 23 C 0.73 18.73 7.98 179.34 1.43 20.16 16 24 O -0.59 -18.80 17.97 -3.82 -0.07 -18.87 16 25 N -0.69 -11.75 4.91 -462.67 -2.27 -14.02 16 26 C 0.12 3.65 6.24 86.57 0.54 4.19 16 27 C -0.09 -2.39 4.08 -9.41 -0.04 -2.42 16 28 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 29 C 0.13 4.98 6.40 86.66 0.55 5.53 16 30 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.01 0.43 6.87 -2.39 -0.02 0.42 16 32 H 0.01 0.59 7.32 -2.39 -0.02 0.58 16 33 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.48 5.89 -2.38 -0.01 1.47 16 35 H 0.18 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.12 2.84 6.66 -2.38 -0.02 2.82 16 37 H 0.42 11.39 8.86 -92.71 -0.82 10.56 16 38 H 0.44 4.98 8.90 -92.71 -0.83 4.16 16 39 H 0.02 0.93 7.47 -2.39 -0.02 0.91 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 41 H 0.02 0.96 7.78 -2.39 -0.02 0.94 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -90.93 340.06 -1.89 -92.81 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -0.55 Total: 11.31 kcal Atomic # 6 Polarization: 42.95 SS G_CDS: 6.20 Total: 49.15 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -9.39 Total: -139.95 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -0.17 Total: -62.11 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -90.93 -1.89 -92.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049087298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.055 kcal (2) G-P(sol) polarization free energy of solvation -90.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds