Wall clock time and date at job start Fri Apr 10 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99854 * 2 1 4 4 H 1.48497 * 109.46958 * 270.00132 * 3 2 1 5 5 H 1.48503 * 109.46981 * 29.99911 * 3 2 1 6 6 H 1.48495 * 109.47012 * 150.00092 * 3 2 1 7 7 C 1.38805 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00502 * 169.22833 * 7 2 1 9 9 N 1.36949 * 119.99916 * 349.23114 * 7 2 1 10 10 C 1.47162 * 120.98781 * 328.38261 * 9 7 2 11 11 C 1.53296 * 108.41520 * 230.54676 * 10 9 7 12 12 O 1.42961 * 109.22055 * 307.72126 * 11 10 9 13 13 C 1.42968 * 114.16754 * 62.57838 * 12 11 10 14 14 C 1.47142 * 120.98239 * 148.46181 * 9 7 2 15 15 H 1.09001 * 109.68414 * 249.19719 * 14 9 7 16 16 C 1.53001 * 109.68578 * 9.71034 * 14 9 7 17 17 N 1.46493 * 109.47201 * 298.65181 * 16 14 9 18 18 C 1.34774 * 120.00176 * 179.97438 * 17 16 14 19 19 O 1.21568 * 120.00312 * 359.97438 * 18 17 16 20 20 C 1.47724 * 120.00188 * 179.97438 * 18 17 16 21 21 C 1.40945 * 125.97422 * 179.97438 * 20 18 17 22 22 C 1.36174 * 107.94828 * 179.65707 * 21 20 18 23 23 N 1.35807 * 107.31216 * 0.72911 * 22 21 20 24 24 N 1.31836 * 125.97446 * 359.97438 * 20 18 17 25 25 C 1.47433 * 108.06449 * 179.03119 * 23 22 21 26 26 C 1.54647 * 102.35175 * 344.69503 * 25 23 22 27 27 O 1.36122 * 140.87395 * 180.68705 * 22 21 20 28 28 H 0.96993 * 119.99944 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.64788 * 110.82187 * 10 9 7 30 30 H 1.09000 * 109.68562 * 350.28948 * 10 9 7 31 31 H 1.08994 * 109.51461 * 187.79709 * 11 10 9 32 32 H 1.09000 * 109.51017 * 67.64302 * 11 10 9 33 33 H 1.09001 * 109.51266 * 177.49312 * 13 12 11 34 34 H 1.08994 * 109.55145 * 57.36881 * 13 12 11 35 35 H 1.08998 * 109.47461 * 178.64523 * 16 14 9 36 36 H 1.09007 * 109.46894 * 58.65025 * 16 14 9 37 37 H 0.97004 * 120.00069 * 359.97438 * 17 16 14 38 38 H 1.07999 * 126.02878 * 359.67664 * 21 20 18 39 39 H 1.08999 * 110.82624 * 226.48055 * 25 23 22 40 40 H 1.08992 * 110.82419 * 102.91097 * 25 23 22 41 41 H 1.09007 * 110.85293 * 266.66553 * 26 25 23 42 42 H 1.08993 * 111.02682 * 143.11155 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0761 -1.2103 -0.1743 9 7 1.3438 -2.3775 0.2227 10 6 0.1598 -2.4239 1.0954 11 6 0.3521 -3.5543 2.1129 12 8 0.6775 -4.7614 1.4194 13 6 1.9042 -4.7035 0.6875 14 6 1.7913 -3.6319 -0.4029 15 1 1.0663 -3.9469 -1.1534 16 6 3.1561 -3.4212 -1.0615 17 7 3.0414 -2.4020 -2.1075 18 6 4.1253 -2.0494 -2.8266 19 8 5.1984 -2.5766 -2.6069 20 6 4.0095 -1.0221 -3.8818 21 6 5.0556 -0.5593 -4.7052 22 6 4.5420 0.3774 -5.5497 23 7 3.2231 0.5087 -5.2536 24 7 2.9095 -0.3778 -4.2181 25 6 2.6549 1.5374 -6.1438 26 6 3.9209 2.2329 -6.6960 27 8 4.9166 1.2015 -6.5663 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7300 -2.6170 0.4960 30 1 0.0516 -1.4737 1.6184 31 1 -0.5690 -3.6961 2.6781 32 1 1.1625 -3.2963 2.7947 33 1 2.0997 -5.6721 0.2274 34 1 2.7208 -4.4502 1.3636 35 1 3.4952 -4.3583 -1.5028 36 1 3.8748 -3.0921 -0.3109 37 1 2.1852 -1.9810 -2.2826 38 1 6.0834 -0.8896 -4.6725 39 1 2.0406 2.2404 -5.5811 40 1 2.0818 1.0789 -6.9496 41 1 4.1813 3.1018 -6.0915 42 1 3.7882 2.5148 -7.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050954613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:25 Heat of formation + Delta-G solvation = 27.861437 kcal Electronic energy + Delta-G solvation = -28138.271570 eV Core-core repulsion = 24123.137706 eV Total energy + Delta-G solvation = -4015.133863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25246 -39.47791 -38.55552 -37.88547 -35.30399 -33.57835 -33.31602 -31.61077 -30.50520 -29.79662 -28.80604 -27.20575 -25.90517 -24.02302 -23.41969 -22.57393 -21.57685 -21.24951 -19.77796 -19.41202 -17.82567 -17.14284 -16.55189 -16.30065 -15.94390 -15.76038 -15.34561 -15.25879 -14.71963 -14.66330 -14.47750 -14.15890 -13.91764 -13.77292 -13.43287 -13.28165 -12.90081 -12.83147 -12.59569 -12.44426 -11.89960 -11.55973 -11.36831 -11.03411 -10.84934 -10.79292 -10.68756 -10.39202 -10.24735 -10.02804 -9.78559 -9.61731 -9.15743 -8.97234 -8.64521 -8.46958 -8.28843 -6.68874 -5.87887 -3.36988 1.51006 1.87781 2.21891 2.73009 3.30514 3.36765 3.41322 3.65607 3.78855 3.84673 4.34293 4.37784 4.50515 4.55926 4.74825 4.95547 5.02865 5.16835 5.28539 5.31432 5.43337 5.60618 5.63616 5.75351 5.87712 5.94813 6.03934 6.09514 6.17489 6.23512 6.35283 6.48117 6.54571 6.77049 6.84999 7.04155 7.09141 7.50761 7.54439 7.73931 7.88705 8.19982 8.32507 8.72051 9.09015 9.69434 10.28268 11.19061 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.004362 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.637033 B = 6418.031873 C = 7542.433848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.015 3.985 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.134 3.866 17 N -0.676 5.676 18 C 0.595 3.405 19 O -0.545 6.545 20 C 0.059 3.941 21 C -0.214 4.214 22 C 0.223 3.777 23 N -0.415 5.415 24 N -0.199 5.199 25 C 0.098 3.902 26 C 0.042 3.958 27 O -0.281 6.281 28 H 0.254 0.746 29 H 0.029 0.971 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.423 0.577 38 H 0.164 0.836 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 1.709 -10.351 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.184 4.184 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.010 3.990 17 N -0.327 5.327 18 C 0.377 3.623 19 O -0.422 6.422 20 C -0.109 4.109 21 C -0.244 4.244 22 C 0.056 3.944 23 N -0.211 5.211 24 N -0.028 5.028 25 C -0.023 4.023 26 C -0.034 4.034 27 O -0.189 6.189 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.262 0.738 38 H 0.181 0.819 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.108 1.528 -10.102 10.679 hybrid contribution 0.718 1.708 -0.347 1.885 sum 3.826 3.235 -10.448 11.587 Atomic orbital electron populations 1.69975 1.05149 1.25531 1.53489 1.25085 0.95213 0.98089 1.00041 0.86408 0.79341 0.84023 0.77812 1.21313 1.21594 1.20388 1.19164 0.91240 0.83261 1.44747 0.91041 1.44084 1.32566 1.02979 1.52055 1.21402 0.88982 0.96713 0.90967 1.23352 0.99155 0.86594 0.95204 1.87801 1.40711 1.36201 1.66377 1.22859 0.86804 0.98648 0.93950 1.21439 0.93653 0.89432 0.93776 0.94018 1.21267 0.97932 0.90136 0.89664 1.45917 1.12413 1.40212 1.34156 1.16732 0.84599 0.80773 0.80199 1.90753 1.27596 1.54991 1.68873 1.22094 0.90995 0.99000 0.98760 1.20015 1.01344 1.04206 0.98836 1.20759 0.85943 0.96364 0.91298 1.50710 1.08277 1.32888 1.29270 1.77934 1.20873 1.03593 1.00365 1.23205 0.97633 0.88887 0.92593 1.24429 0.83817 0.90778 1.04424 1.87103 1.46625 1.38360 1.46777 0.93571 0.95272 0.89065 0.90270 0.94088 0.89842 0.93414 0.91807 0.90999 0.73824 0.81882 0.86950 0.87748 0.88932 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 11.17 55.49 0.62 -23.99 16 2 C 0.02 0.41 5.06 -17.43 -0.09 0.32 16 3 Si 0.89 21.59 29.57 -169.99 -5.03 16.57 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.46 7.09 -15.06 -0.11 -6.57 16 8 H 0.07 1.86 5.84 -52.49 -0.31 1.55 16 9 N -0.59 -13.81 3.03 -164.29 -0.50 -14.31 16 10 C 0.14 3.31 5.38 -3.53 -0.02 3.30 16 11 C 0.03 0.67 6.99 37.31 0.26 0.93 16 12 O -0.39 -7.64 10.74 -35.23 -0.38 -8.02 16 13 C 0.06 1.00 6.29 37.31 0.23 1.23 16 14 C 0.12 2.46 3.20 -67.43 -0.22 2.24 16 15 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.13 2.52 4.44 -4.04 -0.02 2.50 16 17 N -0.68 -13.64 3.81 -61.29 -0.23 -13.87 16 18 C 0.59 12.08 7.83 -12.39 -0.10 11.98 16 19 O -0.55 -11.81 16.90 5.31 0.09 -11.72 16 20 C 0.06 1.14 7.09 -82.97 -0.59 0.55 16 21 C -0.21 -3.63 10.60 -39.30 -0.42 -4.05 16 22 C 0.22 3.41 8.32 -16.53 -0.14 3.28 16 23 N -0.41 -6.49 5.01 -59.63 -0.30 -6.79 16 24 N -0.20 -3.83 12.39 33.32 0.41 -3.42 16 25 C 0.10 0.93 8.10 -2.67 -0.02 0.91 16 26 C 0.04 0.31 8.08 38.02 0.31 0.61 16 27 O -0.28 -3.41 11.19 -20.13 -0.23 -3.64 16 28 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.29 6.36 -51.93 -0.33 1.96 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 37 H 0.42 9.19 7.08 -40.82 -0.29 8.91 16 38 H 0.16 2.51 8.06 -52.49 -0.42 2.08 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -32.60 346.29 -6.75 -39.35 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.52 Total: 7.37 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: -0.91 Total: 17.25 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.00 Total: -62.38 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.51 Total: -23.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.60 -6.75 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.212 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds