Wall clock time and date at job start Fri Apr 10 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48499 * 109.47492 * 270.00348 * 3 2 1 5 5 H 1.48503 * 109.46889 * 30.00277 * 3 2 1 6 6 H 1.48496 * 109.47274 * 150.00177 * 3 2 1 7 7 C 1.38821 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00083 * 190.75148 * 7 2 1 9 9 N 1.36937 * 119.99699 * 10.75916 * 7 2 1 10 10 C 1.47150 * 120.98612 * 31.17032 * 9 7 2 11 11 C 1.53298 * 108.38494 * 129.48592 * 10 9 7 12 12 O 1.42960 * 109.22248 * 52.30238 * 11 10 9 13 13 C 1.42963 * 114.16731 * 297.42170 * 12 11 10 14 14 C 1.47156 * 120.97969 * 211.19347 * 9 7 2 15 15 H 1.09004 * 109.68011 * 110.75197 * 14 9 7 16 16 C 1.53005 * 109.67805 * 350.23668 * 14 9 7 17 17 N 1.46496 * 109.47016 * 60.59949 * 16 14 9 18 18 C 1.34780 * 120.00146 * 179.97438 * 17 16 14 19 19 O 1.21618 * 119.99168 * 359.97438 * 18 17 16 20 20 C 1.47392 * 120.00410 * 179.72169 * 18 17 16 21 21 C 1.38201 * 126.46050 * 359.95971 * 20 18 17 22 22 N 1.34265 * 108.39759 * 179.83063 * 21 20 18 23 23 H 0.96998 * 125.39162 * 180.14391 * 22 21 20 24 24 C 1.37784 * 109.21021 * 0.44232 * 22 21 20 25 25 C 1.46808 * 125.84731 * 179.76249 * 24 22 21 26 26 N 1.34781 * 119.99951 * 359.95807 * 25 24 22 27 27 O 1.21674 * 120.00479 * 179.97438 * 25 24 22 28 28 C 1.36349 * 108.30171 * 359.72529 * 24 22 21 29 29 H 0.97003 * 120.00107 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.68699 * 249.21237 * 10 9 7 31 31 H 1.09002 * 109.68127 * 9.73225 * 10 9 7 32 32 H 1.08997 * 109.51479 * 172.22519 * 11 10 9 33 33 H 1.09000 * 109.51398 * 292.33028 * 11 10 9 34 34 H 1.08999 * 109.51331 * 302.65391 * 13 12 11 35 35 H 1.09000 * 109.51376 * 182.50175 * 13 12 11 36 36 H 1.08991 * 109.47112 * 300.59343 * 16 14 9 37 37 H 1.09001 * 109.46526 * 180.58966 * 16 14 9 38 38 H 0.96996 * 120.00643 * 359.97438 * 17 16 14 39 39 H 1.08010 * 125.80309 * 0.02562 * 21 20 18 40 40 H 0.97002 * 120.00355 * 0.02562 * 26 25 24 41 41 H 0.96997 * 119.99670 * 180.02562 * 26 25 24 42 42 H 1.08005 * 126.49272 * 180.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0760 -1.2105 0.1739 9 7 1.3435 -2.3776 -0.2225 10 6 0.1537 -2.4220 -1.0872 11 6 0.3407 -3.5491 -2.1093 12 8 0.6714 -4.7581 -1.4217 13 6 1.9025 -4.7014 -0.6972 14 6 1.7955 -3.6335 0.3972 15 1 1.0752 -3.9507 1.1514 16 6 3.1643 -3.4235 1.0480 17 7 3.0591 -2.3942 2.0851 18 6 4.1477 -2.0411 2.7969 19 8 5.2172 -2.5774 2.5785 20 6 4.0434 -1.0011 3.8362 21 6 2.9032 -0.3045 4.1894 22 7 3.2172 0.5496 5.1766 23 1 2.5992 1.1583 5.6106 24 6 4.5579 0.4292 5.4709 25 6 5.2867 1.1954 6.4892 26 7 4.6390 2.1137 7.2334 27 8 6.4756 1.0018 6.6612 28 6 5.0914 -0.5240 4.6550 29 1 -0.4850 0.8401 0.0004 30 1 -0.7322 -2.6176 -0.4830 31 1 0.0413 -1.4701 -1.6061 32 1 -0.5838 -3.6899 -2.6692 33 1 1.1461 -3.2880 -2.7959 34 1 2.7141 -4.4449 -1.3781 35 1 2.1016 -5.6712 -0.2413 36 1 3.8813 -3.1051 0.2914 37 1 3.5004 -4.3583 1.4967 38 1 2.2061 -1.9667 2.2595 39 1 1.9250 -0.4285 3.7486 40 1 3.6912 2.2681 7.0965 41 1 5.1207 2.6202 7.9059 42 1 6.1202 -0.8525 4.6381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051247122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:40 Heat of formation + Delta-G solvation = -71.298075 kcal Electronic energy + Delta-G solvation = -27791.700347 eV Core-core repulsion = 23772.266605 eV Total energy + Delta-G solvation = -4019.433743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.61220 -40.62538 -40.01252 -39.50577 -36.87781 -35.23473 -34.92122 -33.33068 -32.43906 -31.99929 -30.51769 -28.93954 -27.08828 -25.19951 -24.33249 -23.99658 -22.96951 -21.37531 -21.32195 -20.54619 -20.05814 -18.56452 -17.96878 -17.53053 -17.39834 -17.02693 -16.82300 -16.39586 -16.23585 -16.15871 -15.98896 -15.39703 -15.37015 -15.08912 -14.88910 -14.63468 -14.58330 -14.40303 -14.05863 -13.51527 -13.37411 -13.07227 -12.85737 -12.72015 -12.43771 -12.08947 -11.95325 -11.80961 -11.55639 -11.27547 -11.02476 -10.87726 -10.59648 -10.52595 -10.24144 -9.79333 -9.40907 -8.57163 -7.82015 -5.32836 0.31929 0.79551 1.41275 1.49528 1.56838 1.90794 2.14965 2.28189 2.47510 2.57576 2.66252 3.07958 3.33439 3.49295 3.87956 3.90752 4.04522 4.12089 4.20936 4.28887 4.38652 4.51765 4.63503 4.68780 4.70104 4.73705 4.84344 4.88811 5.05394 5.16917 5.34271 5.36099 5.51149 5.63957 5.69938 5.76203 5.76241 6.20431 6.33855 6.40333 6.42495 6.83033 7.13840 7.16393 7.45173 7.80953 8.37705 9.21935 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015984 B = 0.003968 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.360460 B = 7054.192415 C = 8196.424556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.022 4.022 3 Si 0.937 3.063 4 H -0.300 1.300 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.065 0.935 9 N -0.605 5.605 10 C 0.150 3.850 11 C 0.044 3.956 12 O -0.397 6.397 13 C 0.056 3.944 14 C 0.129 3.871 15 H 0.043 0.957 16 C 0.141 3.859 17 N -0.689 5.689 18 C 0.578 3.422 19 O -0.603 6.603 20 C -0.255 4.255 21 C 0.107 3.893 22 N -0.500 5.500 23 H 0.442 0.558 24 C -0.069 4.069 25 C 0.599 3.401 26 N -0.828 5.828 27 O -0.578 6.578 28 C -0.070 4.070 29 H 0.251 0.749 30 H 0.011 0.989 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.117 0.883 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.413 0.587 39 H 0.206 0.794 40 H 0.415 0.585 41 H 0.419 0.581 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 1.693 10.443 10.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.219 4.219 3 Si 0.767 3.233 4 H -0.228 1.228 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.025 3.975 11 C -0.034 4.034 12 O -0.316 6.316 13 C -0.023 4.023 14 C 0.022 3.978 15 H 0.060 0.940 16 C 0.017 3.983 17 N -0.339 5.339 18 C 0.367 3.633 19 O -0.486 6.486 20 C -0.265 4.265 21 C -0.037 4.037 22 N -0.096 5.096 23 H 0.285 0.715 24 C -0.180 4.180 25 C 0.385 3.615 26 N -0.392 5.392 27 O -0.457 6.457 28 C -0.097 4.097 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.251 0.749 39 H 0.223 0.777 40 H 0.246 0.754 41 H 0.252 0.748 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.414 1.200 10.413 10.490 hybrid contribution -0.288 2.035 0.030 2.056 sum -0.701 3.235 10.442 10.954 Atomic orbital electron populations 1.70083 1.05788 1.25545 1.55361 1.25440 0.95567 0.99565 1.01302 0.85748 0.78369 0.81979 0.77179 1.22829 1.21100 1.20577 1.19264 0.91019 0.84038 1.42591 0.91725 1.44293 1.31816 1.03650 1.53315 1.21236 0.88213 0.96814 0.91268 1.23233 1.00399 0.85434 0.94314 1.87807 1.41022 1.35736 1.66997 1.22996 0.86063 0.99788 0.93420 1.21531 0.93729 0.88233 0.94257 0.93951 1.21109 0.96546 0.90928 0.89707 1.45768 1.12019 1.40435 1.35662 1.17709 0.83378 0.81459 0.80707 1.90687 1.29514 1.57686 1.70745 1.19643 0.95593 1.06063 1.05164 1.22829 0.99960 0.90691 0.90213 1.41529 1.08151 1.31401 1.28559 0.71500 1.19811 0.84899 1.07190 1.06142 1.16974 0.85581 0.79190 0.79785 1.43429 1.14811 1.40647 1.40318 1.90878 1.16404 1.68581 1.69859 1.21050 0.99048 0.95348 0.94214 0.93947 0.97116 0.91568 0.87837 0.94102 0.93498 0.86501 0.93486 0.90345 0.74950 0.77705 0.75448 0.74816 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.48 11.13 21.65 0.24 -46.24 16 2 C -0.02 -1.05 5.06 84.86 0.43 -0.62 16 3 Si 0.94 40.73 29.57 68.60 2.03 42.75 16 4 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -11.21 7.06 84.04 0.59 -10.62 16 8 H 0.07 3.19 5.81 -2.91 -0.02 3.17 16 9 N -0.60 -26.28 3.03 -673.71 -2.04 -28.32 16 10 C 0.15 6.49 5.38 86.36 0.46 6.96 16 11 C 0.04 1.58 6.99 72.08 0.50 2.08 16 12 O -0.40 -14.13 10.74 -148.98 -1.60 -15.73 16 13 C 0.06 1.80 6.29 72.08 0.45 2.25 16 14 C 0.13 4.67 3.21 44.97 0.14 4.82 16 15 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 16 C 0.14 5.06 4.45 86.38 0.38 5.44 16 17 N -0.69 -25.09 3.76 -466.40 -1.75 -26.84 16 18 C 0.58 22.55 7.81 86.65 0.68 23.23 16 19 O -0.60 -27.65 16.92 -4.09 -0.07 -27.72 16 20 C -0.26 -8.42 6.13 -20.12 -0.12 -8.54 16 21 C 0.11 2.59 11.43 84.31 0.96 3.55 16 22 N -0.50 -8.87 5.91 -183.35 -1.08 -9.96 16 23 H 0.44 3.43 8.14 -92.71 -0.75 2.68 16 24 C -0.07 -1.72 6.99 40.01 0.28 -1.44 16 25 C 0.60 14.06 8.06 86.48 0.70 14.75 16 26 N -0.83 -9.47 8.87 -176.30 -1.56 -11.04 16 27 O -0.58 -19.07 17.69 -4.27 -0.08 -19.14 16 28 C -0.07 -2.29 10.37 22.58 0.23 -2.06 16 29 H 0.25 12.45 8.31 -92.71 -0.77 11.68 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 3.21 6.33 -2.39 -0.02 3.19 16 32 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.05 1.88 7.57 -2.39 -0.02 1.86 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.41 14.77 6.22 -92.71 -0.58 14.19 16 39 H 0.21 4.26 7.44 -2.91 -0.02 4.24 16 40 H 0.41 1.73 7.91 -92.71 -0.73 1.00 16 41 H 0.42 3.61 8.93 -92.71 -0.83 2.78 16 42 H 0.14 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -73.10 349.86 -1.99 -75.10 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -1.77 Total: 27.32 kcal Atomic # 6 Polarization: 34.10 SS G_CDS: 5.70 Total: 39.80 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.20 Total: -122.39 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -1.74 Total: -62.59 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -73.10 -1.99 -75.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051247122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.798 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds