Wall clock time and date at job start Fri Apr 10 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47090 * 269.99517 * 3 2 1 5 5 H 1.48491 * 109.47230 * 29.99938 * 3 2 1 6 6 H 1.48499 * 109.46746 * 149.99613 * 3 2 1 7 7 C 1.38806 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00390 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.47535 * 125.65951 * 359.97438 * 9 7 2 11 11 C 1.55155 * 105.01089 * 203.92908 * 10 9 7 12 12 C 1.53863 * 101.40709 * 324.35776 * 11 10 9 13 13 C 1.52571 * 115.91039 * 264.43427 * 12 11 10 14 14 N 1.47848 * 85.79940 * 264.95200 * 13 12 11 15 15 C 1.34783 * 134.36336 * 156.44347 * 14 13 12 16 16 O 1.21283 * 120.00057 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99945 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47033 * 179.97438 * 17 15 14 19 19 H 1.08996 * 110.53383 * 55.69569 * 18 17 15 20 20 N 1.47314 * 110.59738 * 292.87008 * 18 17 15 21 21 C 1.34525 * 106.61752 * 241.47245 * 20 18 17 22 22 O 1.21544 * 123.77188 * 179.97438 * 21 20 18 23 23 N 1.33788 * 112.45874 * 0.02562 * 21 20 18 24 24 C 1.35116 * 111.68768 * 359.90716 * 23 21 20 25 25 O 1.21235 * 127.33900 * 180.09811 * 24 23 21 26 26 C 1.48114 * 91.16974 * 336.48809 * 14 13 12 27 27 C 1.47368 * 125.65949 * 179.97438 * 9 7 2 28 28 H 0.97008 * 120.00062 * 0.02562 * 1 2 3 29 29 H 1.09004 * 110.33457 * 322.80911 * 10 9 7 30 30 H 1.08997 * 110.33493 * 84.94390 * 10 9 7 31 31 H 1.09000 * 111.03793 * 206.32407 * 11 10 9 32 32 H 1.09001 * 111.03664 * 82.38449 * 11 10 9 33 33 H 1.09002 * 113.84494 * 19.20150 * 13 12 11 34 34 H 1.08999 * 113.84317 * 150.70766 * 13 12 11 35 35 H 1.09003 * 109.47137 * 299.99343 * 17 15 14 36 36 H 1.09000 * 109.47243 * 59.99571 * 17 15 14 37 37 H 0.97003 * 126.69392 * 61.43440 * 20 18 17 38 38 H 0.97010 * 124.17559 * 180.02562 * 23 21 20 39 39 H 1.09000 * 113.72968 * 269.32307 * 26 14 13 40 40 H 1.09001 * 114.03249 * 137.74926 * 26 14 13 41 41 H 1.09007 * 109.98161 * 58.60528 * 27 9 7 42 42 H 1.09000 * 109.98500 * 297.30659 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1427 -2.5335 0.0005 11 6 -0.4075 -3.9362 0.6084 12 6 0.7824 -4.7381 0.0530 13 6 0.5149 -5.5307 -1.2229 14 7 0.2509 -6.6763 -0.3265 15 6 -0.4561 -7.8182 -0.4397 16 8 -1.0511 -8.0636 -1.4677 17 6 -0.5082 -8.7895 0.7113 18 6 -1.3713 -9.9923 0.3250 19 1 -0.9981 -10.4526 -0.5898 20 7 -2.7794 -9.5899 0.1654 21 6 -3.4834 -10.2832 1.0784 22 8 -4.6870 -10.1876 1.2184 23 7 -2.7106 -11.0888 1.8157 24 6 -1.4117 -11.0033 1.4536 25 8 -0.4743 -11.6069 1.9299 26 6 1.0725 -6.0667 0.7445 27 6 1.9329 -3.7307 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5999 -1.7606 0.6184 30 1 -0.5285 -2.4812 -1.0175 31 1 -1.3540 -4.3441 0.2535 32 1 -0.3819 -3.9019 1.6976 33 1 -0.3616 -5.1928 -1.7759 34 1 1.3940 -5.6589 -1.8545 35 1 0.5009 -9.1271 0.9478 36 1 -0.9404 -8.2975 1.5826 37 1 -3.1305 -8.9495 -0.4730 38 1 -3.0420 -11.6649 2.5223 39 1 2.1219 -6.3598 0.7130 40 1 0.6366 -6.1496 1.7401 41 1 2.5726 -3.8501 0.8750 42 1 2.5146 -3.8764 -0.9097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072822517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:47 Heat of formation + Delta-G solvation = -10.676123 kcal Electronic energy + Delta-G solvation = -27119.670126 eV Core-core repulsion = 23102.865148 eV Total energy + Delta-G solvation = -4016.804977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.73093 -40.68544 -39.01881 -38.63002 -36.53780 -35.72022 -34.36367 -32.37321 -31.43181 -29.56665 -28.69427 -26.78939 -26.05054 -25.12965 -23.62745 -23.06178 -21.83100 -20.45176 -19.53432 -18.71758 -18.45780 -17.50148 -17.07000 -17.01884 -16.70634 -16.25924 -16.02853 -15.81581 -15.53507 -14.88200 -14.74890 -14.55703 -14.31741 -13.85063 -13.79261 -13.33103 -13.13233 -12.60252 -12.37551 -12.23668 -12.01228 -11.78907 -11.45309 -11.28840 -11.03539 -10.84647 -10.79774 -10.73056 -10.57398 -10.17566 -10.12274 -9.98605 -9.90238 -9.83649 -9.61624 -8.76053 -8.70626 -6.92249 -5.72188 -3.14357 1.11402 2.03426 2.39591 2.55285 2.63924 2.82486 3.35954 3.41074 3.43059 3.51988 4.03532 4.20973 4.40243 4.41221 4.53408 4.85819 4.90599 5.01086 5.06894 5.15857 5.34697 5.39179 5.44928 5.53416 5.59226 5.65969 5.76389 5.77823 6.04487 6.17573 6.40172 6.44451 6.46107 6.55276 6.58553 6.63713 6.93081 7.42089 7.54643 7.58501 7.77757 7.79350 7.91275 8.27959 9.14428 9.75202 10.39048 11.31766 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028244 B = 0.002446 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.134039 B =11444.294969 C =11801.023935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.120 4.120 12 C -0.103 4.103 13 C 0.127 3.873 14 N -0.636 5.636 15 C 0.538 3.462 16 O -0.548 6.548 17 C -0.139 4.139 18 C 0.109 3.891 19 H 0.138 0.862 20 N -0.709 5.709 21 C 0.701 3.299 22 O -0.544 6.544 23 N -0.681 5.681 24 C 0.532 3.468 25 O -0.463 6.463 26 C 0.112 3.888 27 C 0.151 3.849 28 H 0.253 0.747 29 H 0.107 0.893 30 H 0.013 0.987 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.448 0.552 38 H 0.433 0.567 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.031 0.969 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -20.238 3.068 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.029 3.971 11 C -0.158 4.158 12 C -0.104 4.104 13 C 0.006 3.994 14 N -0.370 5.370 15 C 0.327 3.673 16 O -0.427 6.427 17 C -0.180 4.180 18 C -0.001 4.001 19 H 0.156 0.844 20 N -0.376 5.376 21 C 0.400 3.600 22 O -0.417 6.417 23 N -0.352 5.352 24 C 0.317 3.683 25 O -0.332 6.332 26 C -0.011 4.011 27 C 0.025 3.975 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.295 0.705 38 H 0.275 0.725 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.382 -20.539 2.776 20.772 hybrid contribution 0.301 0.799 -0.007 0.854 sum -1.081 -19.740 2.769 19.963 Atomic orbital electron populations 1.69787 1.04914 1.24897 1.57394 1.24791 0.95723 0.97770 1.02275 0.86074 0.78524 0.83295 0.77595 1.21608 1.21647 1.20677 1.19059 0.90504 0.82353 1.43364 0.90414 1.44576 1.01856 0.99576 1.87000 1.21980 0.84631 0.92157 0.98358 1.22711 0.94619 0.98393 1.00099 1.22467 0.99588 0.93311 0.95050 1.23107 1.01333 0.80865 0.94098 1.50208 1.48404 1.18950 1.19470 1.19823 0.78905 0.80283 0.88268 1.90707 1.45947 1.75104 1.30973 1.21826 1.02702 0.94291 0.99214 1.21771 0.84326 0.94472 0.99487 0.84443 1.45670 1.06690 1.46566 1.38633 1.15912 0.85126 0.79199 0.79735 1.91075 1.10879 1.68627 1.71167 1.44393 1.09967 1.43214 1.37623 1.20802 0.82383 0.82103 0.83038 1.90867 1.38875 1.46282 1.57168 1.23278 0.95448 0.89986 0.92342 1.20987 0.92624 0.85531 0.98366 0.93652 0.87545 0.96872 0.92204 0.91522 0.89732 0.89491 0.86227 0.87606 0.70487 0.72462 0.89181 0.89771 0.95110 0.95569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.91 10.09 55.49 0.56 -25.35 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.22 -5.92 10.28 -15.06 -0.15 -6.08 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.28 3.41 -170.36 -0.58 -14.86 16 10 C 0.15 3.46 5.90 -2.33 -0.01 3.44 16 11 C -0.12 -2.00 6.42 -25.14 -0.16 -2.17 16 12 C -0.10 -1.48 0.98 -154.68 -0.15 -1.63 16 13 C 0.13 1.71 8.07 -3.52 -0.03 1.68 16 14 N -0.64 -7.34 3.63 -184.29 -0.67 -8.01 16 15 C 0.54 5.93 7.95 -10.98 -0.09 5.84 16 16 O -0.55 -7.53 15.72 5.55 0.09 -7.44 16 17 C -0.14 -1.02 5.22 -27.88 -0.15 -1.17 16 18 C 0.11 0.80 3.16 -68.20 -0.22 0.58 16 19 H 0.14 0.91 8.01 -51.93 -0.42 0.50 16 20 N -0.71 -6.07 5.88 -59.19 -0.35 -6.41 16 21 C 0.70 6.77 9.00 -88.02 -0.79 5.98 16 22 O -0.54 -7.33 18.04 5.33 0.10 -7.23 16 23 N -0.68 -4.83 5.71 -15.71 -0.09 -4.92 16 24 C 0.53 4.03 8.17 -10.40 -0.08 3.95 16 25 O -0.46 -4.59 18.02 5.60 0.10 -4.49 16 26 C 0.11 1.16 7.95 -3.38 -0.03 1.14 16 27 C 0.15 2.72 6.75 -3.56 -0.02 2.70 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.11 2.75 5.89 -51.93 -0.31 2.45 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 34 H 0.09 1.09 8.00 -51.93 -0.42 0.67 16 35 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.45 4.11 8.18 -40.82 -0.33 3.78 16 38 H 0.43 2.21 8.96 -40.82 -0.37 1.85 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.03 0.54 8.09 -51.92 -0.42 0.12 16 42 H 0.03 0.47 7.85 -51.93 -0.41 0.06 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -33.12 352.83 -8.12 -41.24 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.59 Total: 1.98 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: -1.98 Total: 13.90 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -1.13 Total: -59.55 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.28 Total: -19.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.12 -8.12 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072822517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.563 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds