Wall clock time and date at job start Fri Apr 10 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47090 * 269.99517 * 3 2 1 5 5 H 1.48491 * 109.47230 * 29.99938 * 3 2 1 6 6 H 1.48499 * 109.46746 * 149.99613 * 3 2 1 7 7 C 1.38806 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00390 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.47535 * 125.65951 * 359.97438 * 9 7 2 11 11 C 1.55155 * 105.01089 * 203.92908 * 10 9 7 12 12 C 1.53863 * 101.40709 * 324.35776 * 11 10 9 13 13 C 1.52571 * 115.91039 * 264.43427 * 12 11 10 14 14 N 1.47848 * 85.79940 * 264.95200 * 13 12 11 15 15 C 1.34783 * 134.36336 * 156.44347 * 14 13 12 16 16 O 1.21283 * 120.00057 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99945 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47033 * 179.97438 * 17 15 14 19 19 H 1.08996 * 110.53383 * 55.69569 * 18 17 15 20 20 N 1.47314 * 110.59738 * 292.87008 * 18 17 15 21 21 C 1.34525 * 106.61752 * 241.47245 * 20 18 17 22 22 O 1.21544 * 123.77188 * 179.97438 * 21 20 18 23 23 N 1.33788 * 112.45874 * 0.02562 * 21 20 18 24 24 C 1.35116 * 111.68768 * 359.90716 * 23 21 20 25 25 O 1.21235 * 127.33900 * 180.09811 * 24 23 21 26 26 C 1.48114 * 91.16974 * 336.48809 * 14 13 12 27 27 C 1.47368 * 125.65949 * 179.97438 * 9 7 2 28 28 H 0.97008 * 120.00062 * 0.02562 * 1 2 3 29 29 H 1.09004 * 110.33457 * 322.80911 * 10 9 7 30 30 H 1.08997 * 110.33493 * 84.94390 * 10 9 7 31 31 H 1.09000 * 111.03793 * 206.32407 * 11 10 9 32 32 H 1.09001 * 111.03664 * 82.38449 * 11 10 9 33 33 H 1.09002 * 113.84494 * 19.20150 * 13 12 11 34 34 H 1.08999 * 113.84317 * 150.70766 * 13 12 11 35 35 H 1.09003 * 109.47137 * 299.99343 * 17 15 14 36 36 H 1.09000 * 109.47243 * 59.99571 * 17 15 14 37 37 H 0.97003 * 126.69392 * 61.43440 * 20 18 17 38 38 H 0.97010 * 124.17559 * 180.02562 * 23 21 20 39 39 H 1.09000 * 113.72968 * 269.32307 * 26 14 13 40 40 H 1.09001 * 114.03249 * 137.74926 * 26 14 13 41 41 H 1.09007 * 109.98161 * 58.60528 * 27 9 7 42 42 H 1.09000 * 109.98500 * 297.30659 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1427 -2.5335 0.0005 11 6 -0.4075 -3.9362 0.6084 12 6 0.7824 -4.7381 0.0530 13 6 0.5149 -5.5307 -1.2229 14 7 0.2509 -6.6763 -0.3265 15 6 -0.4561 -7.8182 -0.4397 16 8 -1.0511 -8.0636 -1.4677 17 6 -0.5082 -8.7895 0.7113 18 6 -1.3713 -9.9923 0.3250 19 1 -0.9981 -10.4526 -0.5898 20 7 -2.7794 -9.5899 0.1654 21 6 -3.4834 -10.2832 1.0784 22 8 -4.6870 -10.1876 1.2184 23 7 -2.7106 -11.0888 1.8157 24 6 -1.4117 -11.0033 1.4536 25 8 -0.4743 -11.6069 1.9299 26 6 1.0725 -6.0667 0.7445 27 6 1.9329 -3.7307 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5999 -1.7606 0.6184 30 1 -0.5285 -2.4812 -1.0175 31 1 -1.3540 -4.3441 0.2535 32 1 -0.3819 -3.9019 1.6976 33 1 -0.3616 -5.1928 -1.7759 34 1 1.3940 -5.6589 -1.8545 35 1 0.5009 -9.1271 0.9478 36 1 -0.9404 -8.2975 1.5826 37 1 -3.1305 -8.9495 -0.4730 38 1 -3.0420 -11.6649 2.5223 39 1 2.1219 -6.3598 0.7130 40 1 0.6366 -6.1496 1.7401 41 1 2.5726 -3.8501 0.8750 42 1 2.5146 -3.8764 -0.9097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072822517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:47 Heat of formation + Delta-G solvation = -37.234058 kcal Electronic energy + Delta-G solvation = -27120.821764 eV Core-core repulsion = 23102.865148 eV Total energy + Delta-G solvation = -4017.956616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.41772 -41.72196 -39.79632 -39.61848 -37.42422 -37.13626 -35.02677 -34.07570 -32.29530 -31.05870 -30.03582 -27.82279 -27.26951 -26.23023 -25.07218 -23.75780 -22.49773 -22.16911 -20.48378 -19.66098 -19.41036 -18.63589 -18.24074 -17.76877 -17.72375 -17.09545 -16.86487 -16.79995 -16.63557 -16.35495 -15.69346 -15.58333 -15.50871 -15.25262 -14.69322 -14.18644 -14.10552 -13.95207 -13.67539 -13.49621 -13.29577 -12.94123 -12.82948 -12.78025 -12.45727 -12.23991 -12.00296 -11.87485 -11.74841 -11.52657 -11.51534 -11.45708 -11.28189 -10.80304 -10.70925 -10.57249 -9.69079 -8.84203 -7.74127 -5.17488 0.45737 1.37794 1.49592 1.50468 1.57927 1.59141 1.73311 1.91960 2.13465 2.52585 2.85725 3.31735 3.42174 3.42715 3.50614 3.68966 3.79026 3.86176 4.14467 4.22732 4.31388 4.44138 4.46423 4.59569 4.65682 4.67231 4.72402 4.80629 4.91295 4.95399 5.05463 5.11497 5.23131 5.26479 5.51519 5.65667 5.72548 5.85873 5.86276 6.31514 6.34292 6.72035 7.05175 7.07988 7.14364 7.82977 8.46125 9.27801 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028244 B = 0.002446 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.134039 B =11444.294969 C =11801.023935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.232 4.232 8 H 0.085 0.915 9 N -0.627 5.627 10 C 0.156 3.844 11 C -0.101 4.101 12 C -0.101 4.101 13 C 0.124 3.876 14 N -0.636 5.636 15 C 0.536 3.464 16 O -0.580 6.580 17 C -0.129 4.129 18 C 0.111 3.889 19 H 0.148 0.852 20 N -0.707 5.707 21 C 0.705 3.295 22 O -0.586 6.586 23 N -0.668 5.668 24 C 0.546 3.454 25 O -0.480 6.480 26 C 0.130 3.870 27 C 0.147 3.853 28 H 0.244 0.756 29 H 0.068 0.932 30 H -0.020 1.020 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.120 0.880 37 H 0.446 0.554 38 H 0.442 0.558 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.046 0.954 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -22.363 4.249 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.103 0.897 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.140 4.140 12 C -0.102 4.102 13 C 0.002 3.998 14 N -0.370 5.370 15 C 0.327 3.673 16 O -0.461 6.461 17 C -0.169 4.169 18 C 0.002 3.998 19 H 0.166 0.834 20 N -0.371 5.371 21 C 0.404 3.596 22 O -0.462 6.462 23 N -0.339 5.339 24 C 0.332 3.668 25 O -0.350 6.350 26 C 0.009 3.991 27 C 0.022 3.978 28 H 0.054 0.946 29 H 0.086 0.914 30 H -0.002 1.002 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.292 0.708 38 H 0.287 0.713 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.064 0.936 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.501 -22.714 3.980 23.065 hybrid contribution -0.242 1.443 -0.445 1.529 sum 0.259 -21.271 3.535 21.565 Atomic orbital electron populations 1.70063 1.06245 1.24809 1.59022 1.25597 0.96534 1.00949 1.03153 0.85101 0.77767 0.79380 0.77238 1.21791 1.22382 1.19115 1.19468 0.91114 0.83709 1.41787 0.89740 1.44890 1.02504 1.01129 1.86821 1.21707 0.84328 0.94788 0.96129 1.22449 0.96214 0.95029 1.00291 1.22347 0.96808 0.94178 0.96873 1.23020 1.00950 0.81924 0.93954 1.50166 1.48826 1.18787 1.19230 1.20411 0.77805 0.80267 0.88787 1.90706 1.47011 1.75751 1.32598 1.21826 1.04264 0.93101 0.97743 1.21866 0.83491 0.94608 0.99849 0.83430 1.45706 1.07317 1.46033 1.38040 1.15946 0.84625 0.79218 0.79799 1.91051 1.12775 1.70004 1.72406 1.44231 1.09630 1.42690 1.37393 1.20641 0.81976 0.81641 0.82554 1.90878 1.39301 1.47059 1.57778 1.23340 0.97148 0.85981 0.92648 1.21196 0.93970 0.83658 0.98954 0.94578 0.91384 1.00214 0.91396 0.90516 0.91935 0.88394 0.83553 0.86179 0.70819 0.71330 0.86276 0.87288 0.93570 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.69 10.09 21.65 0.22 -55.48 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.98 44.45 29.55 68.60 2.03 46.48 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.23 -12.31 10.28 84.03 0.86 -11.45 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -29.87 3.41 -692.88 -2.36 -32.23 16 10 C 0.16 7.25 5.90 86.92 0.51 7.77 16 11 C -0.10 -3.31 6.42 31.62 0.20 -3.10 16 12 C -0.10 -2.67 0.98 -52.12 -0.05 -2.72 16 13 C 0.12 3.12 8.07 85.98 0.69 3.82 16 14 N -0.64 -12.57 3.63 -855.36 -3.10 -15.67 16 15 C 0.54 10.16 7.95 87.66 0.70 10.86 16 16 O -0.58 -14.87 15.72 -3.04 -0.05 -14.91 16 17 C -0.13 -1.36 5.22 29.85 0.16 -1.21 16 18 C 0.11 1.29 3.16 44.37 0.14 1.43 16 19 H 0.15 1.52 8.01 -2.39 -0.02 1.51 16 20 N -0.71 -10.84 5.88 -459.61 -2.70 -13.54 16 21 C 0.70 12.62 9.00 179.44 1.61 14.23 16 22 O -0.59 -15.50 18.04 -3.85 -0.07 -15.57 16 23 N -0.67 -8.06 5.71 -440.68 -2.52 -10.58 16 24 C 0.55 6.69 8.17 87.88 0.72 7.41 16 25 O -0.48 -8.03 18.02 -2.89 -0.05 -8.08 16 26 C 0.13 2.09 7.95 85.92 0.68 2.77 16 27 C 0.15 5.04 6.75 86.22 0.58 5.63 16 28 H 0.24 14.03 8.31 -92.70 -0.77 13.26 16 29 H 0.07 3.71 5.89 -2.38 -0.01 3.69 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 34 H 0.10 2.25 8.00 -2.39 -0.02 2.23 16 35 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.45 7.68 8.18 -92.71 -0.76 6.93 16 38 H 0.44 3.67 8.96 -92.70 -0.83 2.84 16 39 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 1.31 8.12 -2.39 -0.02 1.29 16 41 H 0.05 1.46 8.09 -2.38 -0.02 1.44 16 42 H 0.03 1.02 7.85 -2.39 -0.02 1.01 16 Total: -1.00 -75.04 352.83 -1.84 -76.88 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.51 Total: 10.66 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 7.28 Total: 32.04 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -10.47 Total: -127.51 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.17 Total: -38.56 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.04 -1.84 -76.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072822517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.651 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds