Wall clock time and date at job start Fri Apr 10 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48496 * 109.47192 * 84.80135 * 3 2 1 5 5 H 1.48501 * 109.47124 * 204.80523 * 3 2 1 6 6 H 1.48506 * 109.46597 * 324.80396 * 3 2 1 7 7 C 1.38814 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99275 * 18.46334 * 7 2 1 9 9 N 1.36933 * 119.99970 * 198.46115 * 7 2 1 10 10 C 1.43430 * 120.63104 * 215.59389 * 9 7 2 11 11 C 1.55331 * 116.24190 * 269.35218 * 10 9 7 12 12 C 1.55184 * 108.87352 * 319.46856 * 11 10 9 13 13 O 1.39645 * 110.56826 * 322.14107 * 12 11 10 14 14 C 1.42376 * 108.63199 * 101.17446 * 13 12 11 15 15 H 1.08994 * 108.61919 * 28.42103 * 14 13 12 16 16 C 1.52997 * 108.61877 * 146.33672 * 14 13 12 17 17 N 1.46494 * 109.47094 * 299.99724 * 16 14 13 18 18 C 1.34786 * 120.00099 * 179.97438 * 17 16 14 19 19 O 1.21542 * 119.99860 * 0.02562 * 18 17 16 20 20 C 1.47933 * 120.00025 * 180.02562 * 18 17 16 21 21 C 1.39980 * 120.11582 * 180.02562 * 20 18 17 22 22 C 1.38419 * 117.96912 * 179.97438 * 21 20 18 23 23 C 1.39352 * 118.03475 * 0.02562 * 22 21 20 24 24 O 1.35523 * 120.02595 * 180.02562 * 23 22 21 25 25 N 1.32675 * 119.94504 * 359.97438 * 23 22 21 26 26 N 1.28357 * 122.19640 * 359.72891 * 25 23 22 27 27 C 1.47485 * 113.74964 * 267.33718 * 14 13 12 28 28 H 0.96999 * 120.00813 * 0.02562 * 1 2 3 29 29 H 1.09005 * 108.12920 * 31.11630 * 10 9 7 30 30 H 1.09001 * 108.12354 * 147.59533 * 10 9 7 31 31 H 1.08998 * 109.56412 * 79.28485 * 11 10 9 32 32 H 1.09000 * 109.56733 * 199.64671 * 11 10 9 33 33 H 1.09001 * 109.25871 * 82.42332 * 12 11 10 34 34 H 1.09001 * 109.25748 * 201.86388 * 12 11 10 35 35 H 1.08999 * 109.47067 * 60.00241 * 16 14 13 36 36 H 1.09007 * 109.47131 * 180.02562 * 16 14 13 37 37 H 0.97003 * 120.00192 * 0.02562 * 17 16 14 38 38 H 1.07995 * 121.01164 * 359.97438 * 21 20 18 39 39 H 1.07992 * 120.98393 * 180.02562 * 22 21 20 40 40 H 0.96697 * 113.99880 * 89.99674 * 24 23 22 41 41 H 1.08998 * 110.11643 * 297.75299 * 27 14 13 42 42 H 1.09002 * 110.15022 * 176.20416 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3877 2.1100 1.3943 5 1 3.5983 1.4111 -0.5874 6 1 1.5066 2.6185 -0.8070 7 6 2.0103 -1.2021 0.0005 8 1 1.5120 -2.1135 -0.2953 9 7 3.3268 -1.2323 0.3761 10 6 4.2488 -2.1257 -0.2634 11 6 4.4095 -3.5275 0.3862 12 6 4.4236 -3.3669 1.9297 13 8 5.1162 -2.2112 2.2963 14 6 4.1705 -1.1929 2.6058 15 1 3.2562 -1.6649 2.9656 16 6 4.7413 -0.3199 3.7252 17 7 4.9904 -1.1455 4.9094 18 6 5.4972 -0.5864 6.0262 19 8 5.7471 0.6028 6.0509 20 6 5.7494 -1.4202 7.2219 21 6 6.2751 -0.8420 8.3832 22 6 6.4930 -1.6632 9.4760 23 6 6.1762 -3.0147 9.3531 24 8 6.3728 -3.8550 10.3980 25 7 5.6811 -3.4778 8.2127 26 7 5.4725 -2.7183 7.1991 27 6 3.8340 -0.3268 1.4605 28 1 -0.4851 0.8400 -0.0004 29 1 3.9259 -2.2650 -1.2951 30 1 5.2277 -1.6465 -0.2821 31 1 3.5743 -4.1636 0.0929 32 1 5.3463 -3.9771 0.0572 33 1 3.3982 -3.3023 2.2938 34 1 4.9092 -4.2342 2.3769 35 1 5.6765 0.1310 3.3932 36 1 4.0271 0.4651 3.9738 37 1 4.7913 -2.0947 4.8896 38 1 6.5038 0.2127 8.4253 39 1 6.8965 -1.2683 10.3966 40 1 5.6112 -3.9330 10.9886 41 1 4.7224 0.2037 1.1179 42 1 3.0592 0.3858 1.7435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073526503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:56 Heat of formation + Delta-G solvation = -18.427685 kcal Electronic energy + Delta-G solvation = -27306.823542 eV Core-core repulsion = 23289.682432 eV Total energy + Delta-G solvation = -4017.141110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70149 -39.92327 -39.09438 -38.00895 -35.32444 -35.00128 -33.66273 -32.66331 -31.93990 -31.56378 -28.98132 -26.46370 -25.77007 -25.26303 -24.54306 -22.65102 -21.43909 -21.18075 -19.72046 -19.67182 -18.60839 -18.05719 -17.10831 -16.67398 -16.41111 -15.89205 -15.62489 -15.43846 -15.21930 -14.67760 -14.52536 -14.33090 -14.04678 -13.94652 -13.49138 -13.04077 -12.85485 -12.82022 -12.61542 -12.43516 -12.28677 -12.05422 -11.58045 -11.28219 -10.85224 -10.76924 -10.60729 -10.44904 -10.22625 -10.19431 -10.07923 -10.02308 -9.82842 -9.62428 -9.13722 -9.04597 -8.66314 -6.96261 -6.04228 -3.47998 -0.09315 0.22645 2.25251 2.72947 2.91388 3.23702 3.24935 3.43822 3.48692 3.60272 4.07750 4.19220 4.24480 4.42665 4.45197 4.48349 4.69901 5.07870 5.24099 5.29145 5.31228 5.39339 5.45483 5.57611 5.68522 5.75568 5.83481 5.94461 5.99392 6.08328 6.21935 6.34230 6.41665 6.49892 6.53304 6.70739 6.73008 6.85984 7.33528 7.62170 7.92856 7.94810 8.06879 8.34052 8.87305 9.62743 10.06424 11.11251 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.003078 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.547382 B = 9095.709083 C = 9832.743913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.300 1.300 7 C -0.268 4.268 8 H 0.083 0.917 9 N -0.599 5.599 10 C 0.159 3.841 11 C -0.170 4.170 12 C 0.062 3.938 13 O -0.354 6.354 14 C 0.062 3.938 15 H 0.076 0.924 16 C 0.110 3.890 17 N -0.692 5.692 18 C 0.573 3.427 19 O -0.531 6.531 20 C 0.019 3.981 21 C -0.048 4.048 22 C -0.140 4.140 23 C 0.272 3.728 24 O -0.472 6.472 25 N -0.254 5.254 26 N -0.180 5.180 27 C 0.100 3.900 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.414 0.586 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.410 0.590 41 H 0.049 0.951 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.076 -4.237 18.910 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.168 4.168 3 Si 0.708 3.292 4 H -0.213 1.213 5 H -0.191 1.191 6 H -0.228 1.228 7 C -0.397 4.397 8 H 0.100 0.900 9 N -0.321 5.321 10 C 0.031 3.969 11 C -0.211 4.211 12 C -0.016 4.016 13 O -0.272 6.272 14 C 0.002 3.998 15 H 0.094 0.906 16 C -0.014 4.014 17 N -0.342 5.342 18 C 0.355 3.645 19 O -0.407 6.407 20 C -0.128 4.128 21 C -0.077 4.077 22 C -0.170 4.170 23 C 0.087 3.913 24 O -0.279 6.279 25 N -0.107 5.107 26 N -0.029 5.029 27 C -0.025 4.025 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.250 0.750 38 H 0.186 0.814 39 H 0.181 0.819 40 H 0.269 0.731 41 H 0.067 0.933 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.279 -4.628 17.853 22.157 hybrid contribution 0.142 1.544 1.122 1.914 sum 12.422 -3.084 18.975 22.888 Atomic orbital electron populations 1.69822 1.05882 1.26783 1.52000 1.25438 0.95168 0.97804 0.98420 0.86912 0.80633 0.84426 0.77204 1.21334 1.19074 1.22806 1.18832 0.84228 0.94290 1.42312 0.89960 1.44147 1.07286 1.42316 1.38309 1.20327 0.92647 0.89101 0.94829 1.23543 1.00461 1.00858 0.96217 1.22464 0.96445 0.87304 0.95374 1.87599 1.30871 1.21532 1.87194 1.22139 0.91728 0.91370 0.94550 0.90637 1.21916 1.02209 0.93816 0.83435 1.45805 1.62522 1.13900 1.12007 1.17423 0.78540 0.86440 0.82115 1.90823 1.52450 1.14359 1.83081 1.22988 0.99922 0.93444 0.96415 1.22442 0.91996 1.02955 0.90274 1.22586 1.00333 0.92783 1.01328 1.21066 0.93105 0.87658 0.89449 1.84738 1.42088 1.65286 1.35763 1.73117 1.10959 1.29416 0.97237 1.73312 1.09309 1.02347 1.17966 1.21473 0.98649 0.93601 0.88763 0.92614 0.93422 0.94953 0.91953 0.92386 0.92259 0.91880 0.90225 0.89737 0.74965 0.81383 0.81867 0.73052 0.93301 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.97 55.49 0.78 -26.07 16 2 C 0.03 0.89 5.29 -17.43 -0.09 0.80 16 3 Si 0.88 21.54 24.67 -169.99 -4.19 17.35 16 4 H -0.29 -6.69 6.70 56.52 0.38 -6.31 16 5 H -0.27 -6.43 7.01 56.52 0.40 -6.03 16 6 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 7 C -0.27 -7.20 9.98 -15.06 -0.15 -7.35 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 N -0.60 -13.66 2.22 -174.20 -0.39 -14.05 16 10 C 0.16 3.17 5.32 -4.43 -0.02 3.14 16 11 C -0.17 -2.84 6.75 -24.34 -0.16 -3.00 16 12 C 0.06 0.99 6.38 38.31 0.24 1.24 16 13 O -0.35 -5.99 9.54 -31.95 -0.30 -6.30 16 14 C 0.06 1.07 2.11 -29.39 -0.06 1.01 16 15 H 0.08 1.36 6.77 -51.93 -0.35 1.01 16 16 C 0.11 1.69 5.24 -4.05 -0.02 1.67 16 17 N -0.69 -9.69 5.42 -61.22 -0.33 -10.02 16 18 C 0.57 7.97 7.81 -12.29 -0.10 7.87 16 19 O -0.53 -8.53 16.39 5.33 0.09 -8.45 16 20 C 0.02 0.23 6.83 -82.85 -0.57 -0.34 16 21 C -0.05 -0.41 9.72 -38.86 -0.38 -0.79 16 22 C -0.14 -0.93 10.14 -39.10 -0.40 -1.33 16 23 C 0.27 2.34 7.85 -16.77 -0.13 2.21 16 24 O -0.47 -3.01 13.56 -18.26 -0.25 -3.26 16 25 N -0.25 -2.99 11.54 30.55 0.35 -2.63 16 26 N -0.18 -2.25 10.73 33.32 0.36 -1.89 16 27 C 0.10 2.05 3.45 -4.68 -0.02 2.04 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.05 0.97 7.98 -51.93 -0.41 0.56 16 30 H 0.03 0.62 7.98 -51.93 -0.41 0.21 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.01 6.66 -51.93 -0.35 0.66 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.41 5.50 7.67 -40.82 -0.31 5.18 16 38 H 0.17 1.19 7.71 -52.49 -0.40 0.78 16 39 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.41 0.42 9.06 45.56 0.41 0.84 16 41 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 42 H 0.08 1.85 4.29 -51.93 -0.22 1.62 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -33.52 347.03 -5.11 -38.63 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.59 Total: 4.29 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -1.85 Total: 7.17 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.77 Total: -54.67 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.47 Total: -18.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.19 Total: 17.35 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.52 -5.11 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073526503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.207 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds