Wall clock time and date at job start Fri Apr 10 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48496 * 109.47192 * 84.80135 * 3 2 1 5 5 H 1.48501 * 109.47124 * 204.80523 * 3 2 1 6 6 H 1.48506 * 109.46597 * 324.80396 * 3 2 1 7 7 C 1.38814 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99275 * 18.46334 * 7 2 1 9 9 N 1.36933 * 119.99970 * 198.46115 * 7 2 1 10 10 C 1.43430 * 120.63104 * 215.59389 * 9 7 2 11 11 C 1.55331 * 116.24190 * 269.35218 * 10 9 7 12 12 C 1.55184 * 108.87352 * 319.46856 * 11 10 9 13 13 O 1.39645 * 110.56826 * 322.14107 * 12 11 10 14 14 C 1.42376 * 108.63199 * 101.17446 * 13 12 11 15 15 H 1.08994 * 108.61919 * 28.42103 * 14 13 12 16 16 C 1.52997 * 108.61877 * 146.33672 * 14 13 12 17 17 N 1.46494 * 109.47094 * 299.99724 * 16 14 13 18 18 C 1.34786 * 120.00099 * 179.97438 * 17 16 14 19 19 O 1.21542 * 119.99860 * 0.02562 * 18 17 16 20 20 C 1.47933 * 120.00025 * 180.02562 * 18 17 16 21 21 C 1.39980 * 120.11582 * 180.02562 * 20 18 17 22 22 C 1.38419 * 117.96912 * 179.97438 * 21 20 18 23 23 C 1.39352 * 118.03475 * 0.02562 * 22 21 20 24 24 O 1.35523 * 120.02595 * 180.02562 * 23 22 21 25 25 N 1.32675 * 119.94504 * 359.97438 * 23 22 21 26 26 N 1.28357 * 122.19640 * 359.72891 * 25 23 22 27 27 C 1.47485 * 113.74964 * 267.33718 * 14 13 12 28 28 H 0.96999 * 120.00813 * 0.02562 * 1 2 3 29 29 H 1.09005 * 108.12920 * 31.11630 * 10 9 7 30 30 H 1.09001 * 108.12354 * 147.59533 * 10 9 7 31 31 H 1.08998 * 109.56412 * 79.28485 * 11 10 9 32 32 H 1.09000 * 109.56733 * 199.64671 * 11 10 9 33 33 H 1.09001 * 109.25871 * 82.42332 * 12 11 10 34 34 H 1.09001 * 109.25748 * 201.86388 * 12 11 10 35 35 H 1.08999 * 109.47067 * 60.00241 * 16 14 13 36 36 H 1.09007 * 109.47131 * 180.02562 * 16 14 13 37 37 H 0.97003 * 120.00192 * 0.02562 * 17 16 14 38 38 H 1.07995 * 121.01164 * 359.97438 * 21 20 18 39 39 H 1.07992 * 120.98393 * 180.02562 * 22 21 20 40 40 H 0.96697 * 113.99880 * 89.99674 * 24 23 22 41 41 H 1.08998 * 110.11643 * 297.75299 * 27 14 13 42 42 H 1.09002 * 110.15022 * 176.20416 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3877 2.1100 1.3943 5 1 3.5983 1.4111 -0.5874 6 1 1.5066 2.6185 -0.8070 7 6 2.0103 -1.2021 0.0005 8 1 1.5120 -2.1135 -0.2953 9 7 3.3268 -1.2323 0.3761 10 6 4.2488 -2.1257 -0.2634 11 6 4.4095 -3.5275 0.3862 12 6 4.4236 -3.3669 1.9297 13 8 5.1162 -2.2112 2.2963 14 6 4.1705 -1.1929 2.6058 15 1 3.2562 -1.6649 2.9656 16 6 4.7413 -0.3199 3.7252 17 7 4.9904 -1.1455 4.9094 18 6 5.4972 -0.5864 6.0262 19 8 5.7471 0.6028 6.0509 20 6 5.7494 -1.4202 7.2219 21 6 6.2751 -0.8420 8.3832 22 6 6.4930 -1.6632 9.4760 23 6 6.1762 -3.0147 9.3531 24 8 6.3728 -3.8550 10.3980 25 7 5.6811 -3.4778 8.2127 26 7 5.4725 -2.7183 7.1991 27 6 3.8340 -0.3268 1.4605 28 1 -0.4851 0.8400 -0.0004 29 1 3.9259 -2.2650 -1.2951 30 1 5.2277 -1.6465 -0.2821 31 1 3.5743 -4.1636 0.0929 32 1 5.3463 -3.9771 0.0572 33 1 3.3982 -3.3023 2.2938 34 1 4.9092 -4.2342 2.3769 35 1 5.6765 0.1310 3.3932 36 1 4.0271 0.4651 3.9738 37 1 4.7913 -2.0947 4.8896 38 1 6.5038 0.2127 8.4253 39 1 6.8965 -1.2683 10.3966 40 1 5.6112 -3.9330 10.9886 41 1 4.7224 0.2037 1.1179 42 1 3.0592 0.3858 1.7435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073526503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:55 Heat of formation + Delta-G solvation = -48.400676 kcal Electronic energy + Delta-G solvation = -27308.123268 eV Core-core repulsion = 23289.682432 eV Total energy + Delta-G solvation = -4018.440837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44855 -41.16889 -40.29840 -38.61318 -37.01556 -36.23518 -34.36025 -33.99296 -33.73282 -32.61347 -30.49448 -27.72404 -27.38055 -26.20236 -25.45054 -24.20003 -22.85977 -22.21272 -21.36295 -20.24880 -19.56203 -19.05780 -18.70061 -17.89428 -17.45556 -17.26090 -16.99626 -16.53071 -16.32106 -16.05505 -15.70512 -15.42710 -15.33101 -14.83071 -14.74723 -14.46333 -14.36366 -14.17850 -13.99339 -13.71809 -13.42036 -13.14235 -13.06236 -13.00450 -12.47018 -12.29981 -11.89367 -11.77138 -11.61781 -11.49407 -11.43200 -11.30521 -10.95873 -10.75217 -10.70719 -10.45381 -10.25897 -8.86543 -8.19703 -5.60135 -0.81082 -0.41278 1.29262 1.38512 1.42884 1.52905 1.78833 2.19898 2.40218 2.42434 2.82096 2.86529 2.96833 3.27855 3.40635 3.62530 3.71579 3.86039 3.88509 3.97160 4.22586 4.28956 4.35184 4.42235 4.45415 4.46804 4.60361 4.67909 4.72208 4.73856 4.89290 4.90094 5.01952 5.14946 5.17803 5.21235 5.31720 5.90049 6.17049 6.25046 6.25840 6.43815 6.87623 6.91676 7.31666 7.57154 8.05171 8.99766 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.003078 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.547382 B = 9095.709083 C = 9832.743913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.022 4.022 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.258 1.258 6 H -0.310 1.310 7 C -0.253 4.253 8 H 0.047 0.953 9 N -0.611 5.611 10 C 0.151 3.849 11 C -0.162 4.162 12 C 0.061 3.939 13 O -0.351 6.351 14 C 0.074 3.926 15 H 0.066 0.934 16 C 0.119 3.881 17 N -0.692 5.692 18 C 0.575 3.425 19 O -0.556 6.556 20 C 0.002 3.998 21 C -0.047 4.047 22 C -0.117 4.117 23 C 0.278 3.722 24 O -0.475 6.475 25 N -0.289 5.289 26 N -0.202 5.202 27 C 0.098 3.902 28 H 0.263 0.737 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.417 0.583 38 H 0.184 0.816 39 H 0.207 0.793 40 H 0.433 0.567 41 H 0.061 0.939 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.674 -4.180 21.376 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.218 4.218 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.182 1.182 6 H -0.239 1.239 7 C -0.383 4.383 8 H 0.065 0.935 9 N -0.334 5.334 10 C 0.024 3.976 11 C -0.202 4.202 12 C -0.016 4.016 13 O -0.269 6.269 14 C 0.014 3.986 15 H 0.084 0.916 16 C -0.005 4.005 17 N -0.342 5.342 18 C 0.359 3.641 19 O -0.434 6.434 20 C -0.146 4.146 21 C -0.076 4.076 22 C -0.146 4.146 23 C 0.093 3.907 24 O -0.286 6.286 25 N -0.143 5.143 26 N -0.051 5.051 27 C -0.026 4.026 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.201 0.799 39 H 0.224 0.776 40 H 0.297 0.703 41 H 0.079 0.921 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.908 -4.615 20.355 25.649 hybrid contribution -0.621 1.366 0.443 1.564 sum 14.287 -3.249 20.798 25.441 Atomic orbital electron populations 1.69945 1.07522 1.27432 1.54678 1.26023 0.95709 1.01014 0.99075 0.85942 0.79311 0.80193 0.77930 1.19409 1.18203 1.23852 1.18680 0.85808 0.92947 1.40830 0.93515 1.44224 1.06230 1.43344 1.39591 1.20500 0.92205 0.90425 0.94455 1.23450 1.01682 0.98564 0.96543 1.22543 0.96115 0.88049 0.94939 1.87606 1.30618 1.21575 1.87132 1.21802 0.91792 0.91153 0.93882 0.91632 1.21681 1.02098 0.93352 0.83408 1.45729 1.62725 1.13912 1.11825 1.17695 0.77602 0.86339 0.82475 1.90799 1.53547 1.15425 1.83623 1.22762 1.01880 0.93378 0.96572 1.22662 0.91327 1.03930 0.89640 1.22952 0.98241 0.91406 1.02013 1.21250 0.91680 0.88677 0.89090 1.84702 1.43553 1.64920 1.35384 1.73002 1.12835 1.30072 0.98378 1.73217 1.10246 1.02715 1.18904 1.21513 0.98356 0.93587 0.89170 0.92778 0.94723 0.93877 0.92468 0.89657 0.93730 0.88818 0.89962 0.89904 0.74575 0.79853 0.77606 0.70283 0.92080 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 13.97 21.65 0.30 -58.09 16 2 C -0.02 -1.26 5.29 84.86 0.45 -0.81 16 3 Si 0.94 44.93 24.67 68.60 1.69 46.62 16 4 H -0.27 -11.93 6.70 99.48 0.67 -11.27 16 5 H -0.26 -11.86 7.01 99.48 0.70 -11.16 16 6 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 7 C -0.25 -13.95 9.98 84.03 0.84 -13.11 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 9 N -0.61 -27.83 2.22 -705.06 -1.56 -29.39 16 10 C 0.15 5.90 5.32 87.75 0.47 6.37 16 11 C -0.16 -5.15 6.75 32.14 0.22 -4.94 16 12 C 0.06 1.85 6.38 72.73 0.46 2.32 16 13 O -0.35 -11.26 9.54 -137.24 -1.31 -12.57 16 14 C 0.07 2.48 2.11 28.87 0.06 2.54 16 15 H 0.07 2.36 6.77 -2.39 -0.02 2.34 16 16 C 0.12 3.54 5.24 86.38 0.45 3.99 16 17 N -0.69 -18.83 5.42 -465.89 -2.53 -21.36 16 18 C 0.58 15.52 7.81 86.81 0.68 16.20 16 19 O -0.56 -17.32 16.39 -3.85 -0.06 -17.39 16 20 C 0.00 0.04 6.83 42.00 0.29 0.32 16 21 C -0.05 -0.69 9.72 22.74 0.22 -0.47 16 22 C -0.12 -1.12 10.14 22.58 0.23 -0.89 16 23 C 0.28 4.04 7.85 84.83 0.67 4.71 16 24 O -0.48 -4.58 13.56 -88.26 -1.20 -5.78 16 25 N -0.29 -6.43 11.54 -170.01 -1.96 -8.39 16 26 N -0.20 -4.88 10.73 -48.50 -0.52 -5.40 16 27 C 0.10 3.93 3.45 83.95 0.29 4.22 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.03 1.41 7.98 -2.38 -0.02 1.39 16 30 H 0.04 1.59 7.98 -2.39 -0.02 1.57 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.50 6.66 -2.39 -0.02 1.48 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.42 10.83 7.67 -92.71 -0.71 10.12 16 38 H 0.18 2.07 7.71 -2.91 -0.02 2.05 16 39 H 0.21 0.16 8.06 -2.91 -0.02 0.14 16 40 H 0.43 -0.51 9.06 -74.06 -0.67 -1.18 16 41 H 0.06 2.31 8.05 -2.39 -0.02 2.29 16 42 H 0.07 2.96 4.29 -2.39 -0.01 2.95 16 Total: -1.00 -74.23 347.03 -2.18 -76.41 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.35 Total: 14.91 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 5.32 Total: 20.44 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -6.27 Total: -122.64 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.57 Total: -35.74 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.69 Total: 46.62 kcal Total: -74.23 -2.18 -76.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073526503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.008 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds