Wall clock time and date at job start Fri Apr 10 2020 18:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99655 * 2 1 4 4 H 1.48497 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47337 * 299.99974 * 3 2 1 6 6 H 1.48501 * 109.47314 * 59.99948 * 3 2 1 7 7 C 1.38809 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00123 * 160.67910 * 7 2 1 9 9 N 1.36939 * 119.99962 * 340.68304 * 7 2 1 10 10 C 1.43424 * 120.63250 * 155.67941 * 9 7 2 11 11 C 1.55332 * 116.23861 * 269.37261 * 10 9 7 12 12 C 1.55180 * 108.87303 * 319.46769 * 11 10 9 13 13 O 1.39647 * 110.57552 * 322.14552 * 12 11 10 14 14 C 1.42368 * 108.63702 * 101.16825 * 13 12 11 15 15 H 1.09003 * 108.62215 * 28.43405 * 14 13 12 16 16 C 1.52998 * 108.62079 * 146.34512 * 14 13 12 17 17 N 1.46501 * 109.47234 * 300.00342 * 16 14 13 18 18 C 1.34771 * 120.00213 * 180.02562 * 17 16 14 19 19 O 1.21515 * 120.00174 * 359.97438 * 18 17 16 20 20 C 1.48151 * 120.00231 * 179.97438 * 18 17 16 21 21 C 1.39899 * 121.11864 * 359.97438 * 20 18 17 22 22 N 1.31769 * 119.78673 * 179.72949 * 21 20 18 23 23 N 1.28276 * 122.41411 * 0.24337 * 22 21 20 24 24 C 1.32279 * 122.44323 * 0.02562 * 23 22 21 25 25 O 1.35702 * 120.08240 * 179.97438 * 24 23 22 26 26 C 1.39234 * 119.83159 * 359.97438 * 24 23 22 27 27 C 1.46920 * 113.79096 * 267.45787 * 14 13 12 28 28 H 0.96995 * 120.00458 * 359.97438 * 1 2 3 29 29 H 1.09007 * 108.12422 * 147.61966 * 10 9 7 30 30 H 1.08994 * 107.96998 * 31.00967 * 10 9 7 31 31 H 1.08997 * 109.56852 * 199.65164 * 11 10 9 32 32 H 1.08999 * 109.56701 * 79.28819 * 11 10 9 33 33 H 1.09007 * 109.25977 * 201.85997 * 12 11 10 34 34 H 1.09005 * 109.25654 * 82.42362 * 12 11 10 35 35 H 1.09001 * 109.47645 * 180.02562 * 16 14 13 36 36 H 1.09005 * 109.47272 * 59.99768 * 16 14 13 37 37 H 0.97005 * 119.99495 * 359.97438 * 17 16 14 38 38 H 1.07999 * 120.10812 * 359.97438 * 21 20 18 39 39 H 0.96703 * 113.99450 * 89.99840 * 25 24 23 40 40 H 1.08001 * 121.11205 * 180.02562 * 26 24 23 41 41 H 1.09006 * 109.99152 * 176.12687 * 27 14 13 42 42 H 1.08998 * 109.98971 * 297.49237 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0448 -1.2283 -0.3100 9 7 1.3835 -2.3548 0.3912 10 6 1.8499 -3.6319 -0.0656 11 6 1.2155 -4.1648 -1.3796 12 6 -0.3038 -3.8489 -1.3676 13 8 -0.8280 -4.0077 -0.0830 14 6 -0.9692 -2.7225 0.5128 15 1 -1.1301 -1.9885 -0.2768 16 6 -2.2000 -2.7379 1.4216 17 7 -3.3899 -3.0526 0.6270 18 6 -4.5979 -3.1207 1.2205 19 8 -4.7002 -2.9216 2.4149 20 6 -5.8013 -3.4384 0.4168 21 6 -5.7107 -3.6713 -0.9597 22 7 -6.7973 -3.9570 -1.6481 23 7 -7.9569 -4.0283 -1.1044 24 6 -8.1488 -3.8199 0.1877 25 8 -9.3971 -3.9072 0.7127 26 6 -7.0668 -3.5108 1.0077 27 6 0.1948 -2.3060 1.3067 28 1 -0.4850 0.8400 0.0004 29 1 1.6634 -4.3624 0.7216 30 1 2.9276 -3.5632 -0.2129 31 1 1.3638 -5.2426 -1.4456 32 1 1.6832 -3.6769 -2.2348 33 1 -0.8170 -4.5250 -2.0515 34 1 -0.4598 -2.8209 -1.6949 35 1 -2.3217 -1.7590 1.8853 36 1 -2.0702 -3.4937 2.1963 37 1 -3.3082 -3.2112 -0.3265 38 1 -4.7527 -3.6209 -1.4557 39 1 -9.6325 -4.7926 1.0223 40 1 -7.1998 -3.3372 2.0653 41 1 0.0501 -1.2907 1.6759 42 1 0.3399 -2.9904 2.1425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073649012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:04 Heat of formation + Delta-G solvation = -20.955262 kcal Electronic energy + Delta-G solvation = -27551.873794 eV Core-core repulsion = 23534.623079 eV Total energy + Delta-G solvation = -4017.250714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62161 -39.75680 -38.85240 -37.95052 -35.16327 -34.82094 -33.65545 -32.31551 -31.73996 -31.18454 -28.80866 -26.54760 -25.42025 -24.83318 -24.70949 -22.66287 -21.15069 -20.85563 -19.69747 -19.30513 -18.38173 -17.70198 -17.09990 -16.63682 -16.16006 -16.02687 -15.66661 -15.10724 -14.97686 -14.69161 -14.27969 -14.21064 -13.97523 -13.79982 -13.38327 -13.09564 -12.71248 -12.61735 -12.41214 -12.09853 -11.70784 -11.50127 -11.32948 -10.94188 -10.83439 -10.61470 -10.58647 -10.51870 -10.21624 -10.14802 -10.03936 -9.79037 -9.73385 -9.59841 -9.01575 -8.88799 -8.59519 -6.90488 -6.00312 -3.38486 -0.03479 0.36901 2.49779 2.82458 3.05057 3.28046 3.30152 3.37873 3.39233 3.84115 4.04367 4.32013 4.37660 4.46035 4.56507 4.64863 5.12478 5.20330 5.20916 5.42085 5.53317 5.60090 5.73168 5.81469 5.84596 6.02020 6.20742 6.23475 6.31933 6.38271 6.57674 6.60595 6.69378 6.77911 6.87698 6.88047 7.00742 7.22271 7.41454 7.65797 7.99797 8.03940 8.22479 8.24440 8.99498 9.67569 10.21224 11.09103 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.003098 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.132297 B = 9037.021560 C = 9609.332596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.160 3.840 11 C -0.172 4.172 12 C 0.066 3.934 13 O -0.370 6.370 14 C 0.059 3.941 15 H 0.109 0.891 16 C 0.119 3.881 17 N -0.698 5.698 18 C 0.555 3.445 19 O -0.529 6.529 20 C -0.107 4.107 21 C 0.062 3.938 22 N -0.213 5.213 23 N -0.246 5.246 24 C 0.255 3.745 25 O -0.471 6.471 26 C -0.078 4.078 27 C 0.143 3.857 28 H 0.255 0.745 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.402 0.598 38 H 0.182 0.818 39 H 0.408 0.592 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 -8.850 0.264 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.308 5.308 10 C 0.031 3.969 11 C -0.213 4.213 12 C -0.012 4.012 13 O -0.289 6.289 14 C 0.000 4.000 15 H 0.127 0.873 16 C -0.004 4.004 17 N -0.348 5.348 18 C 0.339 3.661 19 O -0.407 6.407 20 C -0.121 4.121 21 C -0.104 4.104 22 N -0.056 5.056 23 N -0.099 5.099 24 C 0.069 3.931 25 O -0.276 6.276 26 C -0.109 4.109 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.237 0.763 38 H 0.199 0.801 39 H 0.266 0.734 40 H 0.186 0.814 41 H 0.123 0.877 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.810 -8.495 -0.272 14.551 hybrid contribution 1.100 0.892 0.753 1.604 sum -10.710 -7.603 0.482 13.143 Atomic orbital electron populations 1.69851 1.05233 1.25658 1.54727 1.24890 0.95320 0.98375 1.00972 0.86194 0.79405 0.83688 0.77297 1.20365 1.21810 1.21506 1.19313 0.93748 0.85108 1.39505 0.91198 1.44121 1.34088 1.01532 1.51041 1.20390 0.95994 0.87747 0.92772 1.23571 0.96872 0.99145 1.01711 1.22374 0.93561 1.00841 0.84450 1.87514 1.83316 1.28961 1.29092 1.22244 0.93754 0.85058 0.98922 0.87338 1.21868 0.82645 1.01541 0.94358 1.45864 1.06660 1.69391 1.12876 1.17831 0.82774 0.78465 0.87066 1.90799 1.85836 1.49684 1.14334 1.21381 0.95441 1.00256 0.95006 1.24670 1.00574 0.93864 0.91287 1.73086 0.93635 1.09100 1.29791 1.72792 1.16162 1.10468 1.10489 1.20771 0.85834 0.96577 0.89881 1.84819 1.27091 1.36205 1.79506 1.22781 0.90494 0.94357 1.03265 1.20740 0.85394 1.01452 0.90631 0.93492 0.94972 0.94814 0.93120 0.92418 0.92921 0.91801 0.89742 0.91330 0.76292 0.80107 0.73376 0.81368 0.87722 0.96157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -22.70 9.56 55.49 0.53 -22.16 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 20.30 29.60 -169.99 -5.03 15.26 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.20 9.61 -15.06 -0.14 -6.34 16 8 H 0.07 1.77 7.87 -52.48 -0.41 1.35 16 9 N -0.59 -13.40 2.61 -174.50 -0.46 -13.85 16 10 C 0.16 3.20 5.33 -4.43 -0.02 3.18 16 11 C -0.17 -3.01 6.75 -24.34 -0.16 -3.18 16 12 C 0.07 1.12 6.38 38.31 0.24 1.37 16 13 O -0.37 -6.59 9.54 -31.96 -0.30 -6.90 16 14 C 0.06 1.09 1.95 -29.64 -0.06 1.04 16 15 H 0.11 2.28 5.23 -51.93 -0.27 2.01 16 16 C 0.12 1.96 5.24 -4.04 -0.02 1.94 16 17 N -0.70 -9.71 5.39 -61.15 -0.33 -10.04 16 18 C 0.55 7.81 7.80 -12.19 -0.10 7.71 16 19 O -0.53 -9.05 16.49 5.35 0.09 -8.96 16 20 C -0.11 -1.24 5.92 -104.60 -0.62 -1.86 16 21 C 0.06 0.66 10.84 -16.96 -0.18 0.48 16 22 N -0.21 -2.66 11.48 30.79 0.35 -2.31 16 23 N -0.25 -3.11 11.50 30.49 0.35 -2.76 16 24 C 0.26 2.70 7.85 -16.99 -0.13 2.57 16 25 O -0.47 -3.89 13.57 -18.81 -0.26 -4.14 16 26 C -0.08 -0.82 9.72 -38.61 -0.38 -1.20 16 27 C 0.14 3.03 4.71 -4.94 -0.02 3.00 16 28 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 29 H 0.03 0.63 7.99 -51.92 -0.41 0.21 16 30 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.24 6.66 -51.93 -0.35 0.89 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.40 4.83 6.48 -40.82 -0.26 4.57 16 38 H 0.18 1.49 6.53 -52.49 -0.34 1.15 16 39 H 0.41 1.12 9.06 45.56 0.41 1.53 16 40 H 0.17 1.59 7.79 -52.49 -0.41 1.18 16 41 H 0.10 2.45 6.03 -51.93 -0.31 2.14 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -29.93 346.83 -5.96 -35.88 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.45 Total: 6.06 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.68 Total: 8.68 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.45 Total: -51.12 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.47 Total: -20.00 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.93 -5.96 -35.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073649012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.925 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds