Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47026 * 2 1 4 4 N 1.31244 * 124.05698 * 270.16872 * 3 2 1 5 5 N 1.27331 * 120.04079 * 180.33857 * 4 3 2 6 6 S 1.56643 * 109.73936 * 359.71798 * 5 4 3 7 7 C 1.38242 * 124.05625 * 90.00301 * 3 2 1 8 8 C 1.47169 * 128.47582 * 359.97438 * 7 3 2 9 9 O 1.21617 * 120.00175 * 359.70451 * 8 7 3 10 10 N 1.34780 * 119.99975 * 179.70310 * 8 7 3 11 11 C 1.47394 * 125.59106 * 359.97438 * 10 8 7 12 12 C 1.54852 * 104.81373 * 204.60818 * 11 10 8 13 13 C 1.55122 * 101.77640 * 322.81202 * 12 11 10 14 14 H 1.08996 * 114.15847 * 158.73092 * 13 12 11 15 15 C 1.54042 * 108.25655 * 286.10378 * 13 12 11 16 16 N 1.46700 * 106.83100 * 135.80858 * 15 13 12 17 17 C 1.36938 * 125.32021 * 162.08285 * 16 15 13 18 18 H 1.08000 * 120.00565 * 359.71841 * 17 16 15 19 19 C 1.38819 * 119.99735 * 179.71325 * 17 16 15 20 20 N 1.31615 * 120.00156 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47082 * 90.00424 * 21 19 17 23 23 H 1.48501 * 109.47053 * 210.00561 * 21 19 17 24 24 H 1.48499 * 109.46977 * 330.00298 * 21 19 17 25 25 C 1.46636 * 109.35511 * 341.81529 * 16 15 13 26 26 C 1.46735 * 125.58749 * 180.02562 * 10 8 7 27 27 H 1.09001 * 111.83778 * 55.81311 * 26 10 8 28 28 H 1.09000 * 109.46875 * 299.99564 * 1 2 3 29 29 H 1.08994 * 109.47230 * 60.00166 * 1 2 3 30 30 H 1.08997 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47129 * 239.99719 * 2 1 3 32 32 H 1.08996 * 109.47352 * 120.00367 * 2 1 3 33 33 H 1.08996 * 110.37139 * 85.77554 * 11 10 8 34 34 H 1.08999 * 110.37268 * 323.43957 * 11 10 8 35 35 H 1.08992 * 110.97117 * 204.69065 * 12 11 10 36 36 H 1.09002 * 111.00094 * 80.94567 * 12 11 10 37 37 H 1.09003 * 109.98893 * 16.45827 * 15 13 12 38 38 H 1.09007 * 109.98432 * 255.14846 * 15 13 12 39 39 H 0.97001 * 120.00483 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.75361 * 120.92460 * 25 16 15 41 41 H 1.08998 * 109.75812 * 241.62515 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2742 2.1148 -1.0873 5 7 2.7040 3.3101 -0.9982 6 16 2.8495 3.7089 0.5096 7 6 2.2904 2.1507 1.1453 8 6 2.1427 1.7343 2.5491 9 8 1.7414 0.6170 2.8131 10 7 2.4522 2.5913 3.5423 11 6 2.9475 3.9680 3.3642 12 6 3.7242 4.2810 4.6668 13 6 2.8537 3.5668 5.7338 14 1 3.3806 3.3406 6.6607 15 6 1.5719 4.3948 5.9439 16 7 0.4541 3.4454 5.9800 17 6 -0.7919 3.7082 6.4836 18 1 -1.0116 4.6794 6.9019 19 6 -1.7728 2.7263 6.4564 20 7 -1.5051 1.5426 5.9470 21 14 -3.4723 3.0845 7.1439 22 1 -4.3375 3.6287 6.0666 23 1 -4.0676 1.8302 7.6709 24 1 -3.3628 4.0794 8.2409 25 6 0.8777 2.1731 5.3867 26 6 2.3524 2.3062 4.9782 27 1 2.9242 1.4210 5.2566 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1131 4.6590 3.2447 34 1 3.6133 4.0233 2.5030 35 1 3.7623 5.3548 4.8498 36 1 4.7278 3.8570 4.6347 37 1 1.4404 5.0940 5.1182 38 1 1.6298 4.9381 6.8872 39 1 -2.1903 0.8563 5.9283 40 1 0.7690 1.3715 6.1174 41 1 0.2701 1.9557 4.5083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076007218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = 75.484113 kcal Electronic energy + Delta-G solvation = -25971.804145 eV Core-core repulsion = 22401.488226 eV Total energy + Delta-G solvation = -3570.315918 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.99472 -40.28081 -37.92692 -34.95700 -34.30815 -32.42070 -31.00962 -30.54139 -28.94180 -27.57094 -26.33307 -24.86423 -24.01080 -23.05292 -21.88642 -20.61385 -19.76032 -18.80397 -18.51454 -17.13665 -16.69207 -16.25119 -15.95629 -15.12048 -14.84074 -14.56293 -14.27975 -14.07830 -13.86205 -13.49276 -13.30799 -12.90663 -12.75368 -12.45005 -12.38950 -12.08431 -11.99922 -11.70228 -11.41495 -11.33435 -11.07163 -10.88367 -10.81449 -10.57332 -10.40897 -10.24408 -10.04503 -9.95049 -9.83180 -9.76658 -9.72287 -9.67933 -8.63051 -8.39827 -6.85995 -5.71610 -3.07695 -0.25696 0.78574 1.45720 1.95889 2.95474 3.18114 3.38798 3.43547 3.46145 3.85824 4.35569 4.45703 4.56803 4.57404 4.86595 4.96424 5.15108 5.32199 5.35611 5.37912 5.39783 5.44487 5.60021 5.62949 5.74909 5.81548 5.90075 5.98671 6.05062 6.19420 6.20854 6.29559 6.38050 6.40697 6.54926 6.75915 7.42155 7.58882 7.63667 7.70622 7.83857 8.21350 8.26913 9.19791 9.80692 10.43149 11.38433 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.004810 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.877169 B = 5820.047038 C = 6936.468251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C 0.097 3.903 4 N -0.249 5.249 5 N -0.277 5.277 6 S 0.412 5.588 7 C -0.272 4.272 8 C 0.611 3.389 9 O -0.501 6.501 10 N -0.594 5.594 11 C 0.089 3.911 12 C -0.119 4.119 13 C -0.109 4.109 14 H 0.103 0.897 15 C 0.141 3.859 16 N -0.602 5.602 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.175 3.825 26 C 0.116 3.884 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.018 0.982 38 H 0.037 0.963 39 H 0.254 0.746 40 H 0.055 0.945 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.670 3.318 -8.036 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.050 4.050 4 N -0.115 5.115 5 N -0.256 5.256 6 S 0.550 5.450 7 C -0.413 4.413 8 C 0.396 3.604 9 O -0.376 6.376 10 N -0.328 5.328 11 C -0.035 4.035 12 C -0.157 4.157 13 C -0.129 4.129 14 H 0.121 0.879 15 C 0.014 3.986 16 N -0.329 5.329 17 C -0.363 4.363 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.050 3.950 26 C 0.013 3.987 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.763 4.072 -9.097 16.193 hybrid contribution -1.398 -0.859 0.805 1.828 sum 11.365 3.213 -8.291 14.430 Atomic orbital electron populations 1.21672 0.93192 1.02752 1.02447 1.20284 0.97122 0.86329 1.04736 1.22962 0.96992 0.99838 0.85204 1.70666 1.13545 0.99177 1.28117 1.78701 1.18437 1.10577 1.17920 1.82749 1.47039 1.15356 0.99871 1.27841 1.13897 0.99381 1.00191 1.15941 0.78802 0.84546 0.81114 1.90853 1.45106 1.19329 1.82330 1.48213 1.64446 1.13320 1.06778 1.22608 0.98267 0.84293 0.98381 1.22717 0.98254 1.01562 0.93184 1.23186 0.96989 0.95109 0.97628 0.87905 1.21322 0.86401 0.92518 0.98329 1.44211 1.08439 1.09218 1.71037 1.18999 0.86143 0.97994 1.33185 0.90397 1.24829 0.98359 0.96004 1.00964 1.69967 1.32893 1.03632 1.49711 0.86147 0.84233 0.77010 0.78507 1.21655 1.21611 1.20659 1.21287 0.86598 0.88834 0.98296 1.22749 1.01126 0.97504 0.77337 0.89635 0.91646 0.92803 0.91284 0.89772 0.87556 0.89948 0.91569 0.89352 0.90630 0.96440 0.94496 0.93585 0.92682 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.89 37.16 0.37 -1.55 16 2 C -0.04 -0.58 5.94 -27.89 -0.17 -0.75 16 3 C 0.10 1.44 6.25 -82.84 -0.52 0.92 16 4 N -0.25 -3.79 11.54 33.42 0.39 -3.40 16 5 N -0.28 -3.97 12.51 60.35 0.75 -3.22 16 6 S 0.41 4.98 19.59 -107.50 -2.11 2.88 16 7 C -0.27 -4.12 6.65 -35.96 -0.24 -4.36 16 8 C 0.61 10.74 7.39 -12.63 -0.09 10.64 16 9 O -0.50 -10.24 14.77 5.26 0.08 -10.16 16 10 N -0.59 -9.72 2.98 -163.71 -0.49 -10.20 16 11 C 0.09 1.11 5.30 -2.58 -0.01 1.10 16 12 C -0.12 -1.27 6.34 -24.63 -0.16 -1.43 16 13 C -0.11 -1.61 4.33 -87.74 -0.38 -1.99 16 14 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.14 2.61 6.45 -3.39 -0.02 2.59 16 16 N -0.60 -14.74 3.38 -171.95 -0.58 -15.32 16 17 C -0.24 -6.40 10.25 -15.06 -0.15 -6.55 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 20 N -0.92 -27.01 10.24 55.49 0.57 -26.44 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.18 4.19 4.92 -3.66 -0.02 4.17 16 26 C 0.12 2.08 3.61 -66.28 -0.24 1.84 16 27 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.11 1.51 6.48 -51.93 -0.34 1.18 16 33 H 0.08 1.08 7.18 -51.93 -0.37 0.71 16 34 H 0.07 0.67 5.12 -33.26 -0.17 0.50 16 35 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.32 6.52 -51.93 -0.34 -0.02 16 38 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.06 1.49 7.34 -51.93 -0.38 1.11 16 41 H 0.06 1.55 6.64 -51.93 -0.35 1.20 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -32.55 337.33 -8.35 -40.90 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.29 Total: -1.49 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.73 Total: 4.40 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.64 Total: -58.58 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -2.11 Total: 2.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.55 -8.35 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076007218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.385 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds