Wall clock time and date at job start Fri Apr 10 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47328 * 239.99935 * 3 2 1 5 5 H 1.48504 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47391 * 119.99816 * 3 2 1 7 7 C 1.38807 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.46574 * 125.30680 * 179.97438 * 9 7 2 11 11 C 1.53266 * 108.15742 * 177.92205 * 10 9 7 12 12 H 1.09006 * 112.58512 * 222.76902 * 11 10 9 13 13 C 1.54800 * 109.74957 * 95.76801 * 11 10 9 14 14 C 1.54940 * 101.49870 * 212.29370 * 13 11 10 15 15 N 1.47348 * 104.89244 * 37.22930 * 14 13 11 16 16 C 1.34779 * 125.52755 * 156.50476 * 15 14 13 17 17 O 1.21285 * 120.00314 * 180.02562 * 16 15 14 18 18 C 1.50707 * 119.99960 * 0.04628 * 16 15 14 19 19 H 1.08996 * 109.46208 * 40.00002 * 18 16 15 20 20 C 1.53042 * 109.46288 * 280.01640 * 18 16 15 21 21 C 1.50786 * 109.19633 * 286.68905 * 20 18 16 22 22 O 1.21235 * 120.02181 * 145.73725 * 21 20 18 23 23 N 1.34554 * 119.96078 * 325.76142 * 21 20 18 24 24 C 1.34339 * 120.99187 * 4.44015 * 23 21 20 25 25 O 1.21539 * 119.21239 * 191.99638 * 24 23 21 26 26 N 1.34298 * 121.58044 * 12.01318 * 24 23 21 27 27 C 1.47205 * 108.94322 * 336.54464 * 15 14 13 28 28 H 1.09004 * 112.72244 * 235.96464 * 27 15 14 29 29 C 1.46607 * 125.30235 * 0.03945 * 9 7 2 30 30 H 0.96993 * 120.00098 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.73945 * 58.23488 * 10 9 7 32 32 H 1.09001 * 109.73921 * 297.60414 * 10 9 7 33 33 H 1.08997 * 111.01652 * 330.34587 * 13 11 10 34 34 H 1.08993 * 111.02249 * 94.24091 * 13 11 10 35 35 H 1.09001 * 110.35296 * 278.37915 * 14 13 11 36 36 H 1.08996 * 110.36044 * 156.08656 * 14 13 11 37 37 H 1.08997 * 109.51654 * 46.59178 * 20 18 16 38 38 H 1.08995 * 109.52082 * 166.76523 * 20 18 16 39 39 H 0.97003 * 119.50387 * 184.41472 * 23 21 20 40 40 H 0.96999 * 119.53169 * 185.71316 * 26 24 23 41 41 H 1.09001 * 109.91111 * 317.13368 * 29 9 7 42 42 H 1.08994 * 109.91477 * 78.22213 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 1.9382 -3.7197 0.0005 11 6 0.8155 -4.7618 0.0533 12 1 1.0338 -5.5778 0.7424 13 6 0.4842 -5.2468 -1.3789 14 6 -1.0337 -5.5359 -1.2637 15 7 -1.5552 -4.4762 -0.3826 16 6 -2.8321 -4.0465 -0.3455 17 8 -3.1528 -3.1638 0.4220 18 6 -3.8615 -4.6630 -1.2573 19 1 -3.6973 -5.7390 -1.3153 20 6 -3.7361 -4.0519 -2.6548 21 6 -4.2774 -2.6448 -2.6310 22 8 -3.7742 -1.7895 -3.3275 23 7 -5.3188 -2.3388 -1.8359 24 6 -5.8344 -3.2471 -0.9911 25 8 -6.8993 -3.0183 -0.4518 26 7 -5.2012 -4.4018 -0.7278 27 6 -0.4552 -3.9625 0.4499 28 1 -0.6699 -4.0251 1.5167 29 6 -0.1341 -2.5237 -0.0008 30 1 -0.4850 0.8400 -0.0004 31 1 2.5827 -3.8285 0.8728 32 1 2.5239 -3.8556 -0.9086 33 1 0.6785 -4.4635 -2.1116 34 1 1.0375 -6.1537 -1.6224 35 1 -1.2000 -6.5162 -0.8172 36 1 -1.5059 -5.4800 -2.2445 37 1 -2.6874 -4.0335 -2.9515 38 1 -4.3062 -4.6495 -3.3661 39 1 -5.7029 -1.4488 -1.8731 40 1 -5.6378 -5.0722 -0.1793 41 1 -0.5739 -1.8097 0.6955 42 1 -0.5221 -2.3504 -1.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076299409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:19 Heat of formation + Delta-G solvation = -46.527229 kcal Electronic energy + Delta-G solvation = -29031.956795 eV Core-core repulsion = 25013.597197 eV Total energy + Delta-G solvation = -4018.359598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88090 -40.12117 -38.82004 -38.12872 -35.78595 -35.08239 -34.27081 -32.44737 -31.11957 -30.71026 -28.74665 -27.11700 -25.66711 -24.49014 -23.51208 -22.85247 -20.93197 -20.40409 -19.69986 -18.91738 -18.22790 -17.75602 -17.22810 -16.87818 -16.34820 -16.09791 -15.61272 -15.30558 -14.88995 -14.66705 -14.57673 -14.15091 -13.90960 -13.59662 -13.43119 -13.15639 -12.78879 -12.56252 -12.38655 -12.20720 -11.99175 -11.62760 -11.30151 -11.06578 -10.86273 -10.77393 -10.52382 -10.37723 -10.27471 -10.24668 -10.18912 -10.08765 -9.80772 -9.71866 -9.22742 -8.59218 -8.37063 -6.82738 -5.61991 -3.04650 1.69926 2.32895 2.62912 2.84094 3.15965 3.22935 3.43222 3.46901 3.50167 4.07039 4.15641 4.30554 4.50977 4.64030 4.64658 4.76862 4.98128 5.01270 5.08848 5.35117 5.39126 5.53794 5.57251 5.73432 5.80161 5.84564 5.93166 6.12426 6.18206 6.23387 6.44206 6.46270 6.58725 6.61440 6.81104 7.16802 7.44926 7.47780 7.62316 7.74603 7.92664 8.10509 8.25750 8.38928 9.24459 9.85749 10.46673 11.42141 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.004955 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.629916 B = 5649.483320 C = 6905.067128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.144 3.856 11 C -0.109 4.109 12 H 0.088 0.912 13 C -0.122 4.122 14 C 0.094 3.906 15 N -0.602 5.602 16 C 0.500 3.500 17 O -0.505 6.505 18 C 0.125 3.875 19 H 0.131 0.869 20 C -0.150 4.150 21 C 0.524 3.476 22 O -0.485 6.485 23 N -0.670 5.670 24 C 0.728 3.272 25 O -0.560 6.560 26 N -0.707 5.707 27 C 0.113 3.887 28 H 0.084 0.916 29 C 0.166 3.834 30 H 0.254 0.746 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.428 0.572 40 H 0.426 0.574 41 H 0.095 0.905 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 -18.088 -5.634 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.128 4.128 12 H 0.107 0.893 13 C -0.160 4.160 14 C -0.029 4.029 15 N -0.337 5.337 16 C 0.284 3.716 17 O -0.379 6.379 18 C 0.015 3.985 19 H 0.148 0.852 20 C -0.190 4.190 21 C 0.310 3.690 22 O -0.355 6.355 23 N -0.339 5.339 24 C 0.428 3.572 25 O -0.434 6.434 26 N -0.366 5.366 27 C 0.010 3.990 28 H 0.102 0.898 29 C 0.040 3.960 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.269 0.731 40 H 0.265 0.735 41 H 0.113 0.887 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.145 -16.788 -5.411 19.031 hybrid contribution 0.338 0.866 0.195 0.950 sum -6.808 -15.922 -5.216 18.085 Atomic orbital electron populations 1.69891 1.04758 1.25178 1.56052 1.24852 0.95698 0.97808 1.01873 0.86192 0.78409 0.83239 0.77834 1.21164 1.21579 1.21106 1.18948 0.90370 0.82227 1.44845 0.90413 1.44131 1.01471 0.99906 1.87245 1.20990 0.93353 0.85559 0.98290 1.22871 0.95783 0.97982 0.96180 0.89347 1.22797 0.93532 1.01945 0.97724 1.22447 0.95723 0.90772 0.93916 1.48532 1.07695 1.37813 1.39654 1.20449 0.82204 0.83907 0.85026 1.90832 1.78881 1.29018 1.39143 1.21058 0.82972 1.02451 0.92022 0.85183 1.22246 1.06527 0.93410 0.96866 1.20647 0.78486 0.91032 0.78793 1.90847 1.55334 1.49452 1.39890 1.44113 1.33802 1.17465 1.38531 1.15489 0.83067 0.79904 0.78717 1.91019 1.22064 1.76716 1.53646 1.44704 1.16304 1.19014 1.56540 1.23016 0.83662 0.97973 0.94348 0.89795 1.21651 0.84455 0.89826 1.00048 0.93539 0.95879 0.95650 0.89725 0.90119 0.91228 0.90951 0.85150 0.85581 0.73081 0.73464 0.88748 0.96247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.00 10.17 55.49 0.56 -27.43 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.61 10.25 -15.06 -0.15 -6.77 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.20 3.37 -172.21 -0.58 -15.78 16 10 C 0.14 2.80 6.65 -3.86 -0.03 2.78 16 11 C -0.11 -1.63 3.91 -88.33 -0.35 -1.97 16 12 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.12 -1.42 6.23 -24.76 -0.15 -1.58 16 14 C 0.09 0.91 6.34 -2.55 -0.02 0.89 16 15 N -0.60 -8.76 2.85 -161.67 -0.46 -9.22 16 16 C 0.50 7.66 6.55 -10.98 -0.07 7.59 16 17 O -0.51 -10.52 16.26 5.55 0.09 -10.42 16 18 C 0.13 1.19 2.92 -69.11 -0.20 0.99 16 19 H 0.13 0.60 7.67 -51.93 -0.40 0.21 16 20 C -0.15 -1.42 5.45 -27.82 -0.15 -1.57 16 21 C 0.52 7.57 7.44 -11.04 -0.08 7.48 16 22 O -0.48 -8.97 17.93 5.60 0.10 -8.87 16 23 N -0.67 -9.46 5.18 -16.02 -0.08 -9.54 16 24 C 0.73 10.25 7.98 -87.74 -0.70 9.55 16 25 O -0.56 -9.48 17.97 5.33 0.10 -9.38 16 26 N -0.71 -7.46 4.91 -60.11 -0.29 -7.75 16 27 C 0.11 2.08 3.88 -65.74 -0.25 1.82 16 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 29 C 0.17 4.09 4.79 -3.38 -0.02 4.08 16 30 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.48 7.74 -51.93 -0.40 0.08 16 33 H 0.08 1.21 7.88 -51.93 -0.41 0.80 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.51 6.18 -51.93 -0.32 0.19 16 37 H 0.13 1.25 6.73 -51.93 -0.35 0.90 16 38 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.43 5.82 8.86 -40.82 -0.36 5.46 16 40 H 0.43 3.45 8.90 -40.82 -0.36 3.09 16 41 H 0.09 2.80 6.22 -51.93 -0.32 2.48 16 42 H 0.02 0.54 7.95 -51.93 -0.41 0.12 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -39.57 340.52 -8.15 -47.73 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.42 Total: 4.83 kcal Atomic # 6 Polarization: 25.31 SS G_CDS: -2.27 Total: 23.04 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -0.86 Total: -69.74 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: 0.29 Total: -28.68 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -39.57 -8.15 -47.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076299409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.199 kcal (2) G-P(sol) polarization free energy of solvation -39.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds