Wall clock time and date at job start Fri Apr 10 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47328 * 239.99935 * 3 2 1 5 5 H 1.48504 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47391 * 119.99816 * 3 2 1 7 7 C 1.38807 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.46574 * 125.30680 * 179.97438 * 9 7 2 11 11 C 1.53266 * 108.15742 * 177.92205 * 10 9 7 12 12 H 1.09006 * 112.58512 * 222.76902 * 11 10 9 13 13 C 1.54800 * 109.74957 * 95.76801 * 11 10 9 14 14 C 1.54940 * 101.49870 * 212.29370 * 13 11 10 15 15 N 1.47348 * 104.89244 * 37.22930 * 14 13 11 16 16 C 1.34779 * 125.52755 * 156.50476 * 15 14 13 17 17 O 1.21285 * 120.00314 * 180.02562 * 16 15 14 18 18 C 1.50707 * 119.99960 * 0.04628 * 16 15 14 19 19 H 1.08996 * 109.46208 * 40.00002 * 18 16 15 20 20 C 1.53042 * 109.46288 * 280.01640 * 18 16 15 21 21 C 1.50786 * 109.19633 * 286.68905 * 20 18 16 22 22 O 1.21235 * 120.02181 * 145.73725 * 21 20 18 23 23 N 1.34554 * 119.96078 * 325.76142 * 21 20 18 24 24 C 1.34339 * 120.99187 * 4.44015 * 23 21 20 25 25 O 1.21539 * 119.21239 * 191.99638 * 24 23 21 26 26 N 1.34298 * 121.58044 * 12.01318 * 24 23 21 27 27 C 1.47205 * 108.94322 * 336.54464 * 15 14 13 28 28 H 1.09004 * 112.72244 * 235.96464 * 27 15 14 29 29 C 1.46607 * 125.30235 * 0.03945 * 9 7 2 30 30 H 0.96993 * 120.00098 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.73945 * 58.23488 * 10 9 7 32 32 H 1.09001 * 109.73921 * 297.60414 * 10 9 7 33 33 H 1.08997 * 111.01652 * 330.34587 * 13 11 10 34 34 H 1.08993 * 111.02249 * 94.24091 * 13 11 10 35 35 H 1.09001 * 110.35296 * 278.37915 * 14 13 11 36 36 H 1.08996 * 110.36044 * 156.08656 * 14 13 11 37 37 H 1.08997 * 109.51654 * 46.59178 * 20 18 16 38 38 H 1.08995 * 109.52082 * 166.76523 * 20 18 16 39 39 H 0.97003 * 119.50387 * 184.41472 * 23 21 20 40 40 H 0.96999 * 119.53169 * 185.71316 * 26 24 23 41 41 H 1.09001 * 109.91111 * 317.13368 * 29 9 7 42 42 H 1.08994 * 109.91477 * 78.22213 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 1.9382 -3.7197 0.0005 11 6 0.8155 -4.7618 0.0533 12 1 1.0338 -5.5778 0.7424 13 6 0.4842 -5.2468 -1.3789 14 6 -1.0337 -5.5359 -1.2637 15 7 -1.5552 -4.4762 -0.3826 16 6 -2.8321 -4.0465 -0.3455 17 8 -3.1528 -3.1638 0.4220 18 6 -3.8615 -4.6630 -1.2573 19 1 -3.6973 -5.7390 -1.3153 20 6 -3.7361 -4.0519 -2.6548 21 6 -4.2774 -2.6448 -2.6310 22 8 -3.7742 -1.7895 -3.3275 23 7 -5.3188 -2.3388 -1.8359 24 6 -5.8344 -3.2471 -0.9911 25 8 -6.8993 -3.0183 -0.4518 26 7 -5.2012 -4.4018 -0.7278 27 6 -0.4552 -3.9625 0.4499 28 1 -0.6699 -4.0251 1.5167 29 6 -0.1341 -2.5237 -0.0008 30 1 -0.4850 0.8400 -0.0004 31 1 2.5827 -3.8285 0.8728 32 1 2.5239 -3.8556 -0.9086 33 1 0.6785 -4.4635 -2.1116 34 1 1.0375 -6.1537 -1.6224 35 1 -1.2000 -6.5162 -0.8172 36 1 -1.5059 -5.4800 -2.2445 37 1 -2.6874 -4.0335 -2.9515 38 1 -4.3062 -4.6495 -3.3661 39 1 -5.7029 -1.4488 -1.8731 40 1 -5.6378 -5.0722 -0.1793 41 1 -0.5739 -1.8097 0.6955 42 1 -0.5221 -2.3504 -1.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076299409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:18 Heat of formation + Delta-G solvation = -81.720650 kcal Electronic energy + Delta-G solvation = -29033.482896 eV Core-core repulsion = 25013.597197 eV Total energy + Delta-G solvation = -4019.885699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.94571 -41.36961 -40.01578 -39.46446 -36.91661 -36.68188 -35.40071 -34.15650 -32.39980 -31.90361 -30.34798 -28.53231 -26.91869 -26.25441 -24.62232 -23.92680 -22.39082 -21.72981 -20.89908 -20.17722 -19.28599 -18.99812 -18.75843 -18.27002 -17.51220 -17.25101 -17.01139 -16.50675 -16.39538 -15.96012 -15.77460 -15.50735 -15.22249 -15.05662 -14.67756 -14.39099 -14.22573 -13.73070 -13.55703 -13.43422 -13.35034 -13.15588 -12.91431 -12.75626 -12.54383 -12.26471 -11.99437 -11.88646 -11.69276 -11.57114 -11.42954 -11.41422 -11.39633 -11.36490 -10.75914 -10.30342 -9.60808 -8.93028 -7.82517 -5.27062 0.58376 1.32652 1.38488 1.42981 1.49878 1.51620 1.78809 2.12840 2.22560 2.45129 3.19563 3.28124 3.29034 3.39698 3.62706 3.68069 3.84249 4.03751 4.05022 4.14886 4.36815 4.39604 4.44756 4.55011 4.61268 4.75362 4.81616 4.90365 4.97580 5.13062 5.16988 5.24669 5.26302 5.44279 5.53837 5.58383 5.74024 5.79518 6.12864 6.22406 6.39724 6.59112 7.03448 7.05532 7.15256 7.77681 8.36240 9.18440 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.004955 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.629916 B = 5649.483320 C = 6905.067128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.073 4.073 3 Si 0.979 3.021 4 H -0.272 1.272 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.625 5.625 10 C 0.133 3.867 11 C -0.091 4.091 12 H 0.131 0.869 13 C -0.118 4.118 14 C 0.089 3.911 15 N -0.600 5.600 16 C 0.485 3.515 17 O -0.578 6.578 18 C 0.140 3.860 19 H 0.206 0.794 20 C -0.143 4.143 21 C 0.513 3.487 22 O -0.541 6.541 23 N -0.676 5.676 24 C 0.725 3.275 25 O -0.595 6.595 26 N -0.689 5.689 27 C 0.118 3.882 28 H 0.067 0.933 29 C 0.186 3.814 30 H 0.239 0.761 31 H 0.027 0.973 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.187 0.813 39 H 0.422 0.578 40 H 0.440 0.560 41 H 0.030 0.970 42 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.617 -23.270 -6.924 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.266 4.266 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.370 4.370 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.008 3.992 11 C -0.110 4.110 12 H 0.149 0.851 13 C -0.155 4.155 14 C -0.031 4.031 15 N -0.334 5.334 16 C 0.272 3.728 17 O -0.457 6.457 18 C 0.031 3.969 19 H 0.223 0.777 20 C -0.182 4.182 21 C 0.303 3.697 22 O -0.415 6.415 23 N -0.344 5.344 24 C 0.425 3.575 25 O -0.472 6.472 26 N -0.348 5.348 27 C 0.013 3.987 28 H 0.085 0.915 29 C 0.059 3.941 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.204 0.796 39 H 0.262 0.738 40 H 0.282 0.718 41 H 0.048 0.952 42 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -6.019 -22.101 -6.714 23.870 hybrid contribution 0.102 2.502 0.636 2.584 sum -5.917 -19.599 -6.078 21.356 Atomic orbital electron populations 1.70269 1.06535 1.24620 1.58293 1.25771 0.96448 1.01553 1.02793 0.85144 0.77012 0.78564 0.78623 1.19757 1.22903 1.19669 1.19441 0.91144 0.83645 1.42725 0.89359 1.44476 1.02168 1.01625 1.86892 1.21319 0.95189 0.84000 0.98647 1.22921 0.91319 0.97105 0.99702 0.85063 1.22835 0.95938 1.02727 0.94025 1.22957 0.93946 0.90974 0.95233 1.48638 1.06713 1.38464 1.39545 1.21712 0.83275 0.82983 0.84852 1.90816 1.80261 1.32205 1.42391 1.21372 0.79956 1.05756 0.89772 0.77691 1.22477 1.07446 0.90240 0.98083 1.21785 0.77575 0.93011 0.77364 1.90821 1.56881 1.51602 1.42227 1.44272 1.33887 1.17549 1.38660 1.15688 0.82862 0.80580 0.78352 1.90990 1.23819 1.77619 1.54821 1.44632 1.16382 1.17792 1.55945 1.22582 0.87213 0.94682 0.94213 0.91481 1.21138 0.83936 0.93059 0.95918 0.95207 0.95495 0.94569 0.93226 0.85310 0.85980 0.87317 0.84701 0.79570 0.73798 0.71762 0.95217 1.00532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.85 10.17 21.65 0.22 -62.63 16 2 C -0.07 -4.44 5.48 84.86 0.47 -3.98 16 3 Si 0.98 48.69 29.55 68.60 2.03 50.72 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.24 -13.95 10.25 84.03 0.86 -13.09 16 8 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 9 N -0.63 -32.72 3.37 -698.76 -2.36 -35.08 16 10 C 0.13 5.01 6.65 86.45 0.58 5.59 16 11 C -0.09 -2.43 3.91 -9.31 -0.04 -2.46 16 12 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 13 C -0.12 -2.14 6.23 31.87 0.20 -1.94 16 14 C 0.09 1.13 6.34 86.88 0.55 1.68 16 15 N -0.60 -15.97 2.85 -783.79 -2.24 -18.20 16 16 C 0.48 14.17 6.55 87.66 0.57 14.74 16 17 O -0.58 -25.19 16.26 -3.04 -0.05 -25.24 16 18 C 0.14 2.05 2.92 44.28 0.13 2.18 16 19 H 0.21 0.09 7.67 -2.39 -0.02 0.07 16 20 C -0.14 -2.15 5.45 29.89 0.16 -1.99 16 21 C 0.51 14.93 7.44 87.72 0.65 15.58 16 22 O -0.54 -21.12 17.93 -2.89 -0.05 -21.18 16 23 N -0.68 -19.90 5.18 -441.67 -2.29 -22.19 16 24 C 0.72 20.32 7.98 179.34 1.43 21.75 16 25 O -0.59 -20.56 17.97 -3.84 -0.07 -20.63 16 26 N -0.69 -12.69 4.91 -462.63 -2.27 -14.96 16 27 C 0.12 4.31 3.88 46.03 0.18 4.48 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 C 0.19 9.75 4.79 86.75 0.42 10.17 16 30 H 0.24 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.04 1.30 7.74 -2.39 -0.02 1.28 16 33 H 0.05 1.28 7.88 -2.39 -0.02 1.26 16 34 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.11 0.68 6.18 -2.39 -0.01 0.66 16 37 H 0.14 2.05 6.73 -2.39 -0.02 2.03 16 38 H 0.19 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.42 12.67 8.86 -92.71 -0.82 11.85 16 40 H 0.44 5.65 8.90 -92.71 -0.83 4.83 16 41 H 0.03 1.93 6.22 -2.39 -0.01 1.91 16 42 H -0.02 -1.38 7.95 -2.39 -0.02 -1.40 16 Total: -1.00 -103.46 340.52 -1.47 -104.94 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -0.56 Total: 11.74 kcal Atomic # 6 Polarization: 46.55 SS G_CDS: 6.16 Total: 52.71 kcal Atomic # 7 Polarization: -144.13 SS G_CDS: -8.93 Total: -153.06 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -0.17 Total: -67.05 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.72 kcal Total: -103.46 -1.47 -104.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076299409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.215 kcal (2) G-P(sol) polarization free energy of solvation -103.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds