Wall clock time and date at job start Fri Apr 10 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99961 * 2 1 4 4 C 1.50702 * 109.47109 * 275.56935 * 3 2 1 5 5 H 1.07996 * 119.99956 * 4.82764 * 4 3 2 6 6 C 1.37878 * 119.99712 * 184.82606 * 4 3 2 7 7 N 1.31511 * 120.00285 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99467 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46889 * 60.00690 * 8 6 4 10 10 H 1.48506 * 109.47065 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47546 * 300.00037 * 8 6 4 12 12 S 1.65592 * 119.99833 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40473 * 341.92441 * 12 2 1 14 14 O 1.42100 * 106.40280 * 209.00618 * 12 2 1 15 15 N 1.65597 * 107.21917 * 95.46582 * 12 2 1 16 16 C 1.47149 * 120.98311 * 95.75513 * 15 12 2 17 17 C 1.53303 * 108.38636 * 129.48945 * 16 15 12 18 18 H 1.09006 * 109.50804 * 292.37866 * 17 16 15 19 19 C 1.52998 * 109.51416 * 172.23089 * 17 16 15 20 20 O 1.42898 * 109.47097 * 175.25620 * 19 17 16 21 21 O 1.42959 * 109.22130 * 52.30340 * 17 16 15 22 22 C 1.42965 * 114.16476 * 297.42239 * 21 17 16 23 23 C 1.53003 * 109.50953 * 182.50620 * 22 21 17 24 24 C 1.53002 * 109.51039 * 302.65364 * 22 21 17 25 25 C 1.47156 * 120.98332 * 275.78291 * 15 12 2 26 26 H 1.09009 * 109.47279 * 269.99963 * 1 2 3 27 27 H 1.09000 * 109.47000 * 29.99735 * 1 2 3 28 28 H 1.08994 * 109.47209 * 150.00292 * 1 2 3 29 29 H 1.08998 * 109.47326 * 35.56787 * 3 2 1 30 30 H 1.08999 * 109.47011 * 155.56804 * 3 2 1 31 31 H 0.97003 * 119.99565 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.67993 * 9.76697 * 16 15 12 33 33 H 1.08996 * 109.68495 * 249.21110 * 16 15 12 34 34 H 1.09008 * 109.46760 * 295.25091 * 19 17 16 35 35 H 1.08999 * 109.47170 * 55.24759 * 19 17 16 36 36 H 0.96698 * 113.99982 * 179.97438 * 20 19 17 37 37 H 1.09005 * 109.46996 * 60.00153 * 23 22 21 38 38 H 1.09005 * 109.47055 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.47020 * 299.99613 * 23 22 21 40 40 H 1.09000 * 109.47073 * 66.43599 * 24 22 21 41 41 H 1.09004 * 109.46739 * 186.43310 * 24 22 21 42 42 H 1.08993 * 109.47492 * 306.43471 * 24 22 21 43 43 H 1.08987 * 109.68247 * 110.78840 * 25 15 12 44 44 H 1.09002 * 109.71170 * 350.24802 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7727 -1.4141 5 1 1.8432 1.2465 -2.2224 6 6 3.0703 2.9055 -1.6760 7 7 3.6626 3.5459 -0.6918 8 14 3.2342 3.5297 -3.4290 9 1 1.8881 3.8490 -3.9685 10 1 4.0752 4.7536 -3.4420 11 1 3.8691 2.4833 -4.2698 12 16 2.2930 -1.4341 0.0006 13 8 1.3713 -2.4294 0.4240 14 8 3.5261 -1.1853 0.6615 15 7 2.6686 -1.7840 -1.5738 16 6 3.9798 -1.4257 -2.1373 17 6 4.5695 -2.6670 -2.8168 18 1 4.8108 -3.4153 -2.0618 19 6 5.8393 -2.2787 -3.5770 20 8 6.4485 -3.4528 -4.1177 21 8 3.6105 -3.2032 -3.7314 22 6 2.4014 -3.6526 -3.1149 23 6 1.4817 -4.2598 -4.1762 24 6 2.7290 -4.7081 -2.0568 25 6 1.7007 -2.4619 -2.4508 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6553 2.0013 0.5977 30 1 3.1895 1.1155 0.4251 31 1 4.1843 4.3426 -0.8762 32 1 4.6439 -1.0936 -1.3394 33 1 3.8588 -0.6285 -2.8707 34 1 5.5831 -1.5963 -4.3875 35 1 6.5351 -1.7890 -2.8958 36 1 7.2604 -3.2816 -4.6142 37 1 1.9824 -5.1036 -4.6511 38 1 0.5603 -4.6026 -3.7055 39 1 1.2474 -3.5062 -4.9281 40 1 3.2867 -4.2453 -1.2425 41 1 1.8032 -5.1323 -1.6680 42 1 3.3304 -5.4984 -2.5058 43 1 1.3502 -1.7690 -3.2155 44 1 0.8552 -2.8159 -1.8609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420749542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:47 Heat of formation + Delta-G solvation = -164.115593 kcal Electronic energy + Delta-G solvation = -28312.839284 eV Core-core repulsion = 24392.531872 eV Total energy + Delta-G solvation = -3920.307412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.86222 -36.89204 -36.65518 -35.53029 -35.30131 -34.53378 -33.66628 -32.54059 -29.81955 -27.84549 -27.39203 -26.42971 -25.15325 -24.37835 -22.30025 -21.76996 -19.54990 -18.50234 -17.44141 -17.35841 -16.91190 -16.60516 -16.44939 -15.72759 -15.11361 -14.86678 -14.73846 -14.49969 -14.27589 -13.81485 -13.47216 -13.28978 -13.18232 -12.65870 -12.44062 -12.33237 -12.21897 -12.12904 -12.09106 -11.83033 -11.77436 -11.66269 -11.29821 -11.22214 -11.20467 -11.15302 -11.00237 -10.83565 -10.57133 -10.27898 -10.12932 -10.03056 -9.86702 -9.82063 -8.58129 -8.49468 -8.07462 -6.16570 -4.23710 1.15791 3.20921 3.27412 3.27445 3.35135 3.66132 3.99333 4.17539 4.30950 4.73660 4.83762 4.91863 5.00517 5.10070 5.17053 5.19426 5.27697 5.43509 5.45480 5.54417 5.56233 5.61567 5.71466 5.76017 5.81718 5.84444 6.00189 6.03070 6.08202 6.19840 6.21210 6.32962 6.37416 6.50420 6.75075 7.27303 7.35578 7.36388 7.57648 7.60533 7.80248 8.09537 8.81715 9.42548 10.91140 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.006502 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.397480 B = 4305.012262 C = 5531.424116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.786 3.214 13 O -0.995 6.995 14 O -0.977 6.977 15 N -1.000 6.000 16 C 0.099 3.901 17 C 0.080 3.920 18 H 0.070 0.930 19 C 0.084 3.916 20 O -0.567 6.567 21 O -0.359 6.359 22 C 0.103 3.897 23 C -0.135 4.135 24 C -0.175 4.175 25 C 0.100 3.900 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.265 0.735 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.377 0.623 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -12.067 -5.943 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.838 5.838 3 C 0.122 3.878 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.796 3.204 13 O -0.979 6.979 14 O -0.961 6.961 15 N -0.838 5.838 16 C -0.027 4.027 17 C 0.021 3.979 18 H 0.088 0.912 19 C 0.006 3.994 20 O -0.372 6.372 21 O -0.278 6.278 22 C 0.062 3.938 23 C -0.192 4.192 24 C -0.232 4.232 25 C -0.026 4.026 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.224 0.776 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.240 -12.685 -4.994 13.689 hybrid contribution 0.424 1.229 -1.308 1.844 sum -0.816 -11.456 -6.302 13.100 Atomic orbital electron populations 1.21238 0.80071 1.02163 1.00666 1.57677 1.14211 1.23494 1.88454 1.19215 0.92165 0.78897 0.97499 1.21503 1.32090 1.10942 0.93348 0.91971 1.24956 0.95198 0.96474 0.97210 1.69926 1.32549 1.18851 1.31355 0.86643 0.78202 0.78365 0.84707 1.20233 1.21185 1.20050 1.01764 0.73034 0.72811 0.72806 1.93527 1.65110 1.58836 1.80474 1.93560 1.44775 1.85790 1.71989 1.58164 1.21904 1.72806 1.30936 1.21902 0.83999 0.96403 1.00386 1.22429 0.87960 0.95449 0.92098 0.91214 1.22125 0.92525 0.87361 0.97386 1.86511 1.43858 1.32769 1.74052 1.87992 1.25995 1.80589 1.33267 1.21780 0.85927 0.92754 0.93351 1.21710 0.98119 1.01244 0.98157 1.22368 1.02714 0.99038 0.99115 1.22036 0.91516 0.94160 0.94885 0.93754 0.90780 0.92782 0.94671 0.93016 0.92473 0.87629 0.89687 0.92352 0.91556 0.77650 0.91572 0.90905 0.91591 0.92444 0.91150 0.91642 0.90631 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.80 10.32 59.85 0.62 2.42 16 2 N -1.00 -20.56 3.23 -123.05 -0.40 -20.96 16 3 C 0.24 5.97 5.43 -5.20 -0.03 5.95 16 4 C -0.54 -13.72 9.38 -34.44 -0.32 -14.04 16 5 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 8 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 S 2.79 55.75 6.12 -107.50 -0.66 55.10 16 13 O -1.00 -19.99 15.82 -57.17 -0.90 -20.90 16 14 O -0.98 -22.34 15.31 -57.17 -0.88 -23.22 16 15 N -1.00 -17.45 2.82 -113.06 -0.32 -17.76 16 16 C 0.10 1.69 6.01 -3.53 -0.02 1.67 16 17 C 0.08 1.22 2.68 -26.58 -0.07 1.15 16 18 H 0.07 1.08 6.40 -51.93 -0.33 0.75 16 19 C 0.08 1.09 6.71 37.16 0.25 1.34 16 20 O -0.57 -7.11 13.63 -39.97 -0.54 -7.65 16 21 O -0.36 -5.59 9.83 -39.97 -0.39 -5.98 16 22 C 0.10 1.41 1.11 -90.47 -0.10 1.31 16 23 C -0.13 -1.45 8.85 37.16 0.33 -1.13 16 24 C -0.17 -2.34 7.94 37.16 0.30 -2.05 16 25 C 0.10 1.49 5.36 -3.53 -0.02 1.47 16 26 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.05 0.81 7.64 -51.93 -0.40 0.41 16 29 H 0.04 0.90 8.11 -51.93 -0.42 0.47 16 30 H 0.05 1.39 6.98 -51.93 -0.36 1.03 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.11 1.88 6.84 -51.93 -0.35 1.53 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.38 2.80 9.12 45.56 0.42 3.22 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.86 6.33 -51.93 -0.33 0.53 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.08 8.14 -51.94 -0.42 0.66 16 44 H 0.09 1.30 7.08 -51.93 -0.37 0.94 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -32.45 364.27 -8.40 -40.84 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.34 Total: 4.23 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 0.83 Total: -0.30 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.02 Total: -62.76 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -2.72 Total: -57.75 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 55.75 SS G_CDS: -0.66 Total: 55.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.45 -8.40 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420749542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.272 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds