Wall clock time and date at job start Fri Apr 10 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99961 * 2 1 4 4 C 1.50702 * 109.47109 * 275.56935 * 3 2 1 5 5 H 1.07996 * 119.99956 * 4.82764 * 4 3 2 6 6 C 1.37878 * 119.99712 * 184.82606 * 4 3 2 7 7 N 1.31511 * 120.00285 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99467 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46889 * 60.00690 * 8 6 4 10 10 H 1.48506 * 109.47065 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47546 * 300.00037 * 8 6 4 12 12 S 1.65592 * 119.99833 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40473 * 341.92441 * 12 2 1 14 14 O 1.42100 * 106.40280 * 209.00618 * 12 2 1 15 15 N 1.65597 * 107.21917 * 95.46582 * 12 2 1 16 16 C 1.47149 * 120.98311 * 95.75513 * 15 12 2 17 17 C 1.53303 * 108.38636 * 129.48945 * 16 15 12 18 18 H 1.09006 * 109.50804 * 292.37866 * 17 16 15 19 19 C 1.52998 * 109.51416 * 172.23089 * 17 16 15 20 20 O 1.42898 * 109.47097 * 175.25620 * 19 17 16 21 21 O 1.42959 * 109.22130 * 52.30340 * 17 16 15 22 22 C 1.42965 * 114.16476 * 297.42239 * 21 17 16 23 23 C 1.53003 * 109.50953 * 182.50620 * 22 21 17 24 24 C 1.53002 * 109.51039 * 302.65364 * 22 21 17 25 25 C 1.47156 * 120.98332 * 275.78291 * 15 12 2 26 26 H 1.09009 * 109.47279 * 269.99963 * 1 2 3 27 27 H 1.09000 * 109.47000 * 29.99735 * 1 2 3 28 28 H 1.08994 * 109.47209 * 150.00292 * 1 2 3 29 29 H 1.08998 * 109.47326 * 35.56787 * 3 2 1 30 30 H 1.08999 * 109.47011 * 155.56804 * 3 2 1 31 31 H 0.97003 * 119.99565 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.67993 * 9.76697 * 16 15 12 33 33 H 1.08996 * 109.68495 * 249.21110 * 16 15 12 34 34 H 1.09008 * 109.46760 * 295.25091 * 19 17 16 35 35 H 1.08999 * 109.47170 * 55.24759 * 19 17 16 36 36 H 0.96698 * 113.99982 * 179.97438 * 20 19 17 37 37 H 1.09005 * 109.46996 * 60.00153 * 23 22 21 38 38 H 1.09005 * 109.47055 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.47020 * 299.99613 * 23 22 21 40 40 H 1.09000 * 109.47073 * 66.43599 * 24 22 21 41 41 H 1.09004 * 109.46739 * 186.43310 * 24 22 21 42 42 H 1.08993 * 109.47492 * 306.43471 * 24 22 21 43 43 H 1.08987 * 109.68247 * 110.78840 * 25 15 12 44 44 H 1.09002 * 109.71170 * 350.24802 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7727 -1.4141 5 1 1.8432 1.2465 -2.2224 6 6 3.0703 2.9055 -1.6760 7 7 3.6626 3.5459 -0.6918 8 14 3.2342 3.5297 -3.4290 9 1 1.8881 3.8490 -3.9685 10 1 4.0752 4.7536 -3.4420 11 1 3.8691 2.4833 -4.2698 12 16 2.2930 -1.4341 0.0006 13 8 1.3713 -2.4294 0.4240 14 8 3.5261 -1.1853 0.6615 15 7 2.6686 -1.7840 -1.5738 16 6 3.9798 -1.4257 -2.1373 17 6 4.5695 -2.6670 -2.8168 18 1 4.8108 -3.4153 -2.0618 19 6 5.8393 -2.2787 -3.5770 20 8 6.4485 -3.4528 -4.1177 21 8 3.6105 -3.2032 -3.7314 22 6 2.4014 -3.6526 -3.1149 23 6 1.4817 -4.2598 -4.1762 24 6 2.7290 -4.7081 -2.0568 25 6 1.7007 -2.4619 -2.4508 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6553 2.0013 0.5977 30 1 3.1895 1.1155 0.4251 31 1 4.1843 4.3426 -0.8762 32 1 4.6439 -1.0936 -1.3394 33 1 3.8588 -0.6285 -2.8707 34 1 5.5831 -1.5963 -4.3875 35 1 6.5351 -1.7890 -2.8958 36 1 7.2604 -3.2816 -4.6142 37 1 1.9824 -5.1036 -4.6511 38 1 0.5603 -4.6026 -3.7055 39 1 1.2474 -3.5062 -4.9281 40 1 3.2867 -4.2453 -1.2425 41 1 1.8032 -5.1323 -1.6680 42 1 3.3304 -5.4984 -2.5058 43 1 1.3502 -1.7690 -3.2155 44 1 0.8552 -2.8159 -1.8609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420749542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:46 Heat of formation + Delta-G solvation = -190.027596 kcal Electronic energy + Delta-G solvation = -28313.962913 eV Core-core repulsion = 24392.531872 eV Total energy + Delta-G solvation = -3921.431041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02636 -38.47546 -37.71178 -37.24571 -36.98025 -35.84148 -34.74620 -34.49307 -30.95674 -29.67866 -28.35049 -27.59548 -26.81188 -25.64279 -24.16438 -22.87132 -20.75334 -19.97618 -18.98235 -18.61439 -18.40290 -18.26771 -17.81819 -17.22337 -16.61846 -16.14286 -16.03609 -15.75728 -15.60030 -15.19615 -14.95700 -14.79631 -14.30072 -14.09233 -13.96816 -13.72615 -13.58186 -13.45159 -13.36620 -13.18527 -13.01549 -13.00012 -12.94697 -12.77046 -12.69326 -12.50553 -12.39288 -12.30535 -12.06228 -11.96394 -11.76940 -11.33285 -11.20724 -10.92157 -10.58434 -9.91373 -9.68999 -8.17234 -6.31512 -0.42553 1.44090 1.44601 1.52648 1.83429 2.40537 2.45476 2.58961 3.07725 3.14937 3.38108 3.61946 3.74844 3.89573 3.98117 4.05105 4.10896 4.19579 4.27344 4.32235 4.48642 4.61854 4.65603 4.67427 4.70728 4.77326 4.79466 4.87972 4.94414 4.99629 5.02071 5.04917 5.22376 5.23050 5.31698 5.40170 5.51014 5.73369 5.90865 6.08864 6.23299 6.80441 6.89732 7.38974 8.90641 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.006502 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.397480 B = 4305.012262 C = 5531.424116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.003 6.003 3 C 0.258 3.742 4 C -0.539 4.539 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.927 5.927 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.263 1.263 12 S 2.796 3.204 13 O -0.995 6.995 14 O -1.012 7.012 15 N -0.998 5.998 16 C 0.100 3.900 17 C 0.083 3.917 18 H 0.063 0.937 19 C 0.087 3.913 20 O -0.581 6.581 21 O -0.368 6.368 22 C 0.097 3.903 23 C -0.130 4.130 24 C -0.174 4.174 25 C 0.093 3.907 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -13.187 -8.080 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.845 5.845 3 C 0.135 3.865 4 C -0.578 4.578 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.567 5.567 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.187 1.187 12 S 2.807 3.193 13 O -0.979 6.979 14 O -0.996 6.996 15 N -0.838 5.838 16 C -0.027 4.027 17 C 0.023 3.977 18 H 0.081 0.919 19 C 0.008 3.992 20 O -0.390 6.390 21 O -0.287 6.287 22 C 0.056 3.944 23 C -0.187 4.187 24 C -0.232 4.232 25 C -0.032 4.032 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.191 -13.828 -7.139 15.715 hybrid contribution 0.685 1.504 -0.613 1.763 sum -1.506 -12.324 -7.752 14.637 Atomic orbital electron populations 1.21495 0.77929 1.03507 1.02007 1.57611 1.15720 1.22183 1.88951 1.18782 0.90816 0.80076 0.96854 1.21726 1.31600 1.10768 0.93726 0.91197 1.25772 0.94902 0.96762 1.01063 1.70059 1.33601 1.19444 1.33584 0.85636 0.78364 0.77861 0.80023 1.19501 1.21347 1.18732 1.01295 0.72256 0.72540 0.73253 1.93516 1.64964 1.58492 1.80954 1.93511 1.46433 1.86196 1.73485 1.57956 1.22629 1.72763 1.30454 1.21894 0.83708 0.97383 0.99668 1.22383 0.88858 0.94116 0.92315 0.91891 1.22073 0.91918 0.87524 0.97657 1.86445 1.45304 1.32711 1.74527 1.87994 1.26565 1.80513 1.33642 1.22025 0.85754 0.92292 0.94315 1.21733 0.98281 1.01283 0.97429 1.22378 1.03283 0.99062 0.98446 1.22336 0.91398 0.94682 0.94792 0.92510 0.90588 0.90263 0.96367 0.96218 0.92504 0.89252 0.90341 0.91906 0.90315 0.75090 0.91022 0.88713 0.91308 0.94588 0.89681 0.90935 0.89887 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.15 10.32 127.77 1.32 4.47 16 2 N -1.00 -41.34 3.23 -543.22 -1.75 -43.10 16 3 C 0.26 12.93 5.43 85.64 0.46 13.40 16 4 C -0.54 -27.44 9.38 25.60 0.24 -27.20 16 5 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 6 C 0.01 0.78 5.46 84.66 0.46 1.24 16 7 N -0.93 -52.60 13.29 21.45 0.28 -52.31 16 8 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 12 S 2.80 111.95 6.12 -56.49 -0.35 111.60 16 13 O -1.00 -38.92 15.82 -128.00 -2.02 -40.95 16 14 O -1.01 -47.73 15.31 -128.00 -1.96 -49.69 16 15 N -1.00 -34.24 2.82 -511.62 -1.44 -35.68 16 16 C 0.10 3.40 6.01 86.36 0.52 3.92 16 17 C 0.08 2.47 2.68 30.70 0.08 2.55 16 18 H 0.06 1.95 6.40 -2.38 -0.02 1.93 16 19 C 0.09 2.14 6.71 71.98 0.48 2.62 16 20 O -0.58 -13.55 13.63 -144.44 -1.97 -15.52 16 21 O -0.37 -10.82 9.83 -144.44 -1.42 -12.24 16 22 C 0.10 2.46 1.11 -10.69 -0.01 2.44 16 23 C -0.13 -2.40 8.85 71.98 0.64 -1.76 16 24 C -0.17 -4.36 7.94 71.98 0.57 -3.79 16 25 C 0.09 2.58 5.36 86.35 0.46 3.04 16 26 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.08 2.45 8.07 -2.39 -0.02 2.44 16 28 H 0.08 2.18 7.64 -2.39 -0.02 2.16 16 29 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 30 H 0.02 1.11 6.98 -2.39 -0.02 1.09 16 31 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.09 3.31 6.84 -2.39 -0.02 3.29 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.40 5.11 9.12 -74.06 -0.68 4.43 16 37 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.03 1.04 6.33 -2.39 -0.02 1.03 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.11 2.66 7.08 -2.39 -0.02 2.64 16 Total: -1.00 -69.16 364.27 -3.05 -72.21 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.32 Total: 21.89 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.23 Total: 0.94 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -2.91 Total: -131.09 kcal Atomic # 8 Polarization: -111.03 SS G_CDS: -7.37 Total: -118.40 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 111.95 SS G_CDS: -0.35 Total: 111.60 kcal Total: -69.16 -3.05 -72.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420749542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.820 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds