Wall clock time and date at job start Fri Apr 10 2020 18:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35122 * 125.54924 * 2 1 4 4 C 1.40983 * 108.24109 * 179.97438 * 3 2 1 5 5 N 1.33304 * 126.35885 * 180.02562 * 4 3 2 6 6 C 1.32912 * 119.99903 * 359.97438 * 5 4 3 7 7 O 1.21596 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99939 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.46726 * 179.97438 * 8 6 5 10 10 N 1.46504 * 109.47004 * 179.97438 * 9 8 6 11 11 C 1.47101 * 125.55561 * 90.00179 * 10 9 8 12 12 C 1.54091 * 103.77384 * 179.97438 * 11 10 9 13 13 O 1.45703 * 104.00828 * 359.97438 * 12 11 10 14 14 C 1.33771 * 109.47758 * 359.76249 * 13 12 11 15 15 O 1.21512 * 123.07083 * 180.24285 * 14 13 12 16 16 N 1.37284 * 107.28321 * 359.76076 * 4 3 2 17 17 H 0.96998 * 126.34329 * 180.25859 * 16 4 3 18 18 N 1.36334 * 125.55091 * 179.97438 * 2 1 3 19 19 C 1.46500 * 125.86516 * 0.02562 * 18 2 1 20 20 C 1.50706 * 109.46949 * 84.99868 * 19 18 2 21 21 H 1.07995 * 120.00167 * 359.72205 * 20 19 18 22 22 C 1.37879 * 119.99394 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47405 * 60.00219 * 24 22 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47399 * 299.99813 * 24 22 20 28 28 H 1.08995 * 109.47210 * 270.01527 * 1 2 3 29 29 H 1.08998 * 109.47128 * 30.02287 * 1 2 3 30 30 H 1.09003 * 109.46937 * 150.02011 * 1 2 3 31 31 H 1.08002 * 125.87992 * 359.97438 * 3 2 1 32 32 H 1.08992 * 109.47453 * 300.00159 * 8 6 5 33 33 H 1.08998 * 109.46628 * 60.00477 * 8 6 5 34 34 H 1.08995 * 109.47674 * 299.99924 * 9 8 6 35 35 H 1.08998 * 109.47170 * 60.00818 * 9 8 6 36 36 H 1.09000 * 110.56479 * 298.55058 * 11 10 9 37 37 H 1.08996 * 110.56414 * 61.40383 * 11 10 9 38 38 H 1.08993 * 110.52266 * 118.63369 * 12 11 10 39 39 H 1.09002 * 110.51570 * 241.22739 * 12 11 10 40 40 H 1.09000 * 109.47175 * 324.99894 * 19 18 2 41 41 H 1.09001 * 109.47297 * 204.99402 * 19 18 2 42 42 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6386 0.6799 0.0006 5 7 4.7125 1.4697 0.0013 6 6 4.5659 2.7907 0.0009 7 8 3.4522 3.2788 -0.0005 8 6 5.7799 3.6836 0.0022 9 6 5.3360 5.1478 0.0008 10 7 6.5161 6.0159 0.0028 11 6 7.2074 6.5223 -1.1929 12 6 8.3586 7.3709 -0.6192 13 8 8.1966 7.2553 0.8242 14 6 7.1379 6.4834 1.0938 15 8 6.7755 6.2265 2.2248 16 7 3.6380 -0.6929 0.0064 17 1 4.4191 -1.2681 0.0117 18 7 2.2997 -1.1092 0.0005 19 6 1.8328 -2.4978 0.0006 20 6 1.5558 -2.9347 -1.4149 21 1 1.7077 -2.2455 -2.2323 22 6 1.1036 -4.2129 -1.6658 23 7 0.9135 -5.0505 -0.6699 24 14 0.7610 -4.7546 -3.4203 25 1 2.0062 -4.6508 -4.2226 26 1 0.2876 -6.1622 -3.4202 27 1 -0.2840 -3.8816 -4.0129 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9487 2.1232 -0.0004 32 1 6.3760 3.4851 0.8929 33 1 6.3780 3.4848 -0.8871 34 1 4.7402 5.3461 -0.8901 35 1 4.7376 5.3469 0.8899 36 1 7.5994 5.6967 -1.7870 37 1 6.5369 7.1403 -1.7898 38 1 9.3223 6.9671 -0.9295 39 1 8.2613 8.4097 -0.9345 40 1 0.9189 -2.5738 0.5897 41 1 2.5997 -3.1390 0.4352 42 1 0.5950 -5.9495 -0.8464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494351986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:55 Heat of formation + Delta-G solvation = -28.553561 kcal Electronic energy + Delta-G solvation = -26164.407905 eV Core-core repulsion = 22146.827703 eV Total energy + Delta-G solvation = -4017.580201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.53727 -42.44877 -40.10373 -38.32870 -36.89853 -36.00852 -34.79951 -33.72446 -32.84938 -32.20913 -30.23533 -28.85080 -28.53917 -26.24187 -24.79725 -24.43863 -23.06408 -21.79455 -21.14043 -20.43160 -18.93202 -18.59786 -18.24528 -18.14357 -17.79563 -17.07854 -16.80205 -16.67911 -16.23861 -16.08896 -15.56202 -15.50912 -15.04192 -14.62713 -14.48366 -14.44921 -14.33994 -14.08959 -14.00806 -13.67773 -13.64754 -13.24179 -13.09243 -13.05652 -12.92175 -12.72748 -12.29513 -12.20834 -12.05690 -11.76732 -11.61469 -11.11200 -10.85232 -10.76822 -10.34405 -10.05294 -9.82850 -8.62802 -8.29625 -6.57154 0.11965 0.51693 1.39674 1.40188 1.41982 1.45597 1.49952 1.60549 2.29957 2.60022 2.74111 2.83241 2.94484 3.39050 3.55997 3.67323 3.70717 3.95753 4.10295 4.20556 4.27542 4.31385 4.50653 4.56284 4.68442 4.74806 4.77576 4.79927 4.81581 4.92178 4.95525 4.97886 5.02733 5.12409 5.31147 5.38467 5.49842 5.68314 5.96294 6.10130 6.34664 6.40051 6.60184 6.82904 6.91092 7.16475 7.83339 8.65720 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028501 B = 0.002102 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.189263 B =13316.304649 C =13616.542186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.198 3.802 3 C -0.344 4.344 4 C 0.455 3.545 5 N -0.716 5.716 6 C 0.486 3.514 7 O -0.610 6.610 8 C -0.117 4.117 9 C 0.170 3.830 10 N -0.624 5.624 11 C 0.058 3.942 12 C 0.037 3.963 13 O -0.348 6.348 14 C 0.635 3.365 15 O -0.580 6.580 16 N -0.463 5.463 17 H 0.452 0.548 18 N -0.344 5.344 19 C 0.266 3.734 20 C -0.563 4.563 21 H 0.059 0.941 22 C 0.032 3.968 23 N -0.912 5.912 24 Si 0.963 3.037 25 H -0.276 1.276 26 H -0.280 1.280 27 H -0.266 1.266 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.643 16.670 -5.402 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.071 3.929 3 C -0.376 4.376 4 C 0.207 3.793 5 N -0.481 5.481 6 C 0.273 3.727 7 O -0.495 6.495 8 C -0.158 4.158 9 C 0.049 3.951 10 N -0.371 5.371 11 C -0.063 4.063 12 C -0.036 4.036 13 O -0.258 6.258 14 C 0.390 3.610 15 O -0.469 6.469 16 N -0.185 5.185 17 H 0.301 0.699 18 N -0.130 5.130 19 C 0.149 3.851 20 C -0.601 4.601 21 H 0.077 0.923 22 C -0.171 4.171 23 N -0.549 5.549 24 Si 0.788 3.212 25 H -0.201 1.201 26 H -0.205 1.205 27 H -0.191 1.191 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.101 0.899 31 H 0.196 0.804 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.817 16.058 -4.636 18.452 hybrid contribution -0.166 -0.877 -0.618 1.086 sum 7.651 15.181 -5.254 17.793 Atomic orbital electron populations 1.20837 0.83535 1.05731 1.05420 1.21959 0.96131 0.84539 0.90310 1.22232 0.91185 1.00455 1.23699 1.19445 0.92281 0.82527 0.85033 1.68786 1.28414 1.06044 1.44854 1.21116 0.89692 0.86646 0.75288 1.90521 1.28381 1.79459 1.51119 1.21466 0.96358 0.93268 1.04687 1.20914 0.83473 0.86321 1.04395 1.48176 1.31540 1.50700 1.06683 1.23256 0.94790 1.00324 0.87969 1.24799 1.01059 1.04353 0.73424 1.87241 1.44509 1.64536 1.29508 1.18730 0.79153 0.77674 0.85461 1.91004 1.68588 1.63976 1.23299 1.44554 0.99049 1.05098 1.69817 0.69881 1.47873 0.93234 1.08129 1.63766 1.19759 0.96247 0.70759 0.98327 1.21477 1.47609 0.98601 0.92398 0.92279 1.25595 0.94148 0.95911 1.01438 1.69955 1.44698 1.07287 1.32990 0.85510 0.78802 0.77551 0.79333 1.20136 1.20532 1.19059 0.87389 0.86955 0.89854 0.80398 0.90456 0.87184 0.87264 0.91653 0.86753 0.86343 0.85036 0.84783 0.91203 0.94003 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 9.92 71.24 0.71 -1.78 16 2 C 0.20 6.73 6.93 41.14 0.29 7.02 16 3 C -0.34 -12.87 9.40 22.22 0.21 -12.66 16 4 C 0.46 17.78 8.07 133.83 1.08 18.86 16 5 N -0.72 -28.16 10.51 -309.87 -3.26 -31.41 16 6 C 0.49 18.11 7.71 87.95 0.68 18.79 16 7 O -0.61 -24.74 12.89 -4.02 -0.05 -24.79 16 8 C -0.12 -3.31 6.10 29.85 0.18 -3.13 16 9 C 0.17 4.27 5.31 86.38 0.46 4.72 16 10 N -0.62 -13.05 2.96 -951.44 -2.82 -15.87 16 11 C 0.06 0.50 7.70 86.63 0.67 1.16 16 12 C 0.04 0.27 8.23 72.35 0.60 0.87 16 13 O -0.35 -7.51 11.09 -47.31 -0.52 -8.04 16 14 C 0.64 17.81 8.85 129.91 1.15 18.96 16 15 O -0.58 -22.43 17.54 19.65 0.34 -22.09 16 16 N -0.46 -16.71 7.37 -54.81 -0.40 -17.11 16 17 H 0.45 14.40 8.96 -213.28 -1.91 12.49 16 18 N -0.34 -12.77 3.63 -337.49 -1.23 -13.99 16 19 C 0.27 10.92 5.71 85.63 0.49 11.40 16 20 C -0.56 -25.85 9.39 25.60 0.24 -25.61 16 21 H 0.06 2.80 7.81 -2.91 -0.02 2.78 16 22 C 0.03 1.49 5.46 84.66 0.46 1.95 16 23 N -0.91 -45.04 13.29 21.45 0.28 -44.76 16 24 Si 0.96 37.90 29.54 68.60 2.03 39.93 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.08 2.32 7.80 -2.39 -0.02 2.30 16 31 H 0.18 6.89 5.77 -2.91 -0.02 6.88 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 35 H 0.06 2.03 7.87 -2.39 -0.02 2.01 16 36 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.07 2.87 7.88 -2.39 -0.02 2.85 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 Total: -1.00 -71.55 364.69 0.72 -70.83 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.85 Total: 26.73 kcal Atomic # 6 Polarization: 33.38 SS G_CDS: 7.20 Total: 40.58 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -7.42 Total: -123.14 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -0.23 Total: -54.92 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -71.55 0.72 -70.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494351986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.273 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds