Wall clock time and date at job start Fri Apr 10 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35757 * 116.99878 * 2 1 4 4 C 1.39375 * 120.05958 * 180.02562 * 3 2 1 5 5 C 1.38434 * 117.97822 * 179.97438 * 4 3 2 6 6 C 1.39522 * 117.95995 * 359.97438 * 5 4 3 7 7 N 1.39443 * 120.09354 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00135 * 175.27927 * 7 6 5 9 9 O 1.21372 * 120.00207 * 6.19277 * 8 7 6 10 10 C 1.49357 * 119.99849 * 186.19455 * 8 7 6 11 11 O 1.21358 * 119.99973 * 8.04851 * 10 8 7 12 12 N 1.34774 * 120.00251 * 188.04396 * 10 8 7 13 13 C 1.46492 * 120.00470 * 177.75396 * 12 10 8 14 14 C 1.50700 * 109.47329 * 89.99868 * 13 12 10 15 15 H 1.07999 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00080 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99860 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47230 * 89.99919 * 18 16 14 20 20 H 1.48504 * 109.46865 * 209.99543 * 18 16 14 21 21 H 1.48500 * 109.46998 * 329.99778 * 18 16 14 22 22 C 1.46507 * 119.99553 * 357.75006 * 12 10 8 23 23 C 1.53004 * 109.46657 * 151.37085 * 22 12 10 24 24 C 1.52993 * 109.47459 * 271.36828 * 22 12 10 25 25 N 1.32317 * 119.82191 * 359.97438 * 6 5 4 26 26 N 1.28354 * 122.15823 * 0.02562 * 25 6 5 27 27 H 1.08999 * 109.46715 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46947 * 299.99776 * 1 2 3 29 29 H 1.09003 * 109.47256 * 59.99962 * 1 2 3 30 30 H 1.08003 * 121.01155 * 0.24695 * 4 3 2 31 31 H 1.08001 * 121.01694 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99577 * 355.27167 * 7 6 5 33 33 H 1.09000 * 109.47700 * 210.00164 * 13 12 10 34 34 H 1.09004 * 109.46915 * 330.00007 * 13 12 10 35 35 H 0.96995 * 120.00272 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.46805 * 31.37364 * 22 12 10 37 37 H 1.08991 * 109.47326 * 69.25464 * 23 22 12 38 38 H 1.09005 * 109.46632 * 189.25435 * 23 22 12 39 39 H 1.09005 * 109.47252 * 309.24714 * 23 22 12 40 40 H 1.09005 * 109.47052 * 49.61592 * 24 22 12 41 41 H 1.08998 * 109.47679 * 169.61723 * 24 22 12 42 42 H 1.09001 * 109.47338 * 289.62264 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4371 1.2840 -0.0005 5 6 4.0204 2.5395 -0.0011 6 6 3.1783 3.6520 -0.0016 7 7 3.7183 4.9376 -0.0016 8 6 2.9069 6.0094 -0.0981 9 8 1.7023 5.8629 -0.0718 10 6 3.4900 7.3773 -0.2375 11 8 4.6834 7.5135 -0.4106 12 7 2.6908 8.4606 -0.1712 13 6 3.2688 9.8038 -0.2586 14 6 3.3144 10.2383 -1.7009 15 1 2.9496 9.5794 -2.4750 16 6 3.8226 11.4764 -2.0322 17 7 4.2672 12.2784 -1.0896 18 14 3.8784 12.0151 -3.8200 19 1 2.6158 12.7167 -4.1652 20 1 5.0270 12.9340 -4.0244 21 1 4.0367 10.8232 -4.6914 22 6 1.2439 8.2946 -0.0118 23 6 0.6695 9.5074 0.7232 24 6 0.5892 8.1761 -1.3895 25 7 1.8659 3.4838 -0.0021 26 7 1.3263 2.3192 -0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.0422 0.3894 -0.0050 31 1 5.0943 2.6543 -0.0019 32 1 4.6780 5.0605 0.0680 33 1 2.6553 10.5012 0.3117 34 1 4.2796 9.7916 0.1493 35 1 4.6244 13.1496 -1.3226 36 1 1.0432 7.3917 0.5648 37 1 0.7227 10.3830 0.0763 38 1 -0.3701 9.3133 0.9872 39 1 1.2466 9.6898 1.6298 40 1 1.1222 7.4326 -1.9823 41 1 -0.4504 7.8704 -1.2727 42 1 0.6297 9.1409 -1.8952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000551763906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:09 Heat of formation + Delta-G solvation = -37.409765 kcal Electronic energy + Delta-G solvation = -27397.345584 eV Core-core repulsion = 23379.381349 eV Total energy + Delta-G solvation = -4017.964235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.63553 -41.73432 -39.93984 -39.11911 -38.03109 -36.27031 -34.89622 -34.13146 -32.55676 -31.69650 -29.87281 -28.51510 -28.08045 -26.91532 -25.50175 -24.78338 -23.85846 -22.42501 -21.09763 -19.53579 -19.23404 -18.93965 -18.64864 -17.98280 -17.67586 -17.38755 -16.88491 -16.63835 -16.19344 -15.66790 -15.54007 -15.39167 -15.14199 -15.01230 -14.78268 -14.65894 -14.23311 -13.88848 -13.51181 -13.38612 -13.08810 -12.91692 -12.90276 -12.86487 -12.78602 -12.46336 -12.35770 -12.18406 -12.15607 -12.02280 -11.76087 -11.50956 -11.04772 -10.69761 -10.59731 -10.17507 -9.65814 -9.50576 -8.20722 -6.32525 -0.28159 -0.25132 0.55381 1.09407 1.38531 1.39818 1.50418 1.92736 2.08691 2.34551 2.44598 2.54002 3.01210 3.10535 3.17700 3.47255 3.70110 3.90150 4.02856 4.24415 4.29155 4.38927 4.40315 4.48991 4.66717 4.70651 4.75097 4.82898 4.83914 4.92816 5.01034 5.14602 5.15246 5.19987 5.34379 5.44440 5.55956 5.72482 5.84604 5.97972 6.06370 6.40445 6.64150 6.73349 6.99893 7.36358 7.64854 8.86851 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.002950 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.485014 B = 9487.848255 C = 9876.324360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.226 3.774 4 C -0.092 4.092 5 C -0.093 4.093 6 C 0.255 3.745 7 N -0.618 5.618 8 C 0.506 3.494 9 O -0.459 6.459 10 C 0.491 3.509 11 O -0.554 6.554 12 N -0.558 5.558 13 C 0.253 3.747 14 C -0.534 4.534 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.924 5.924 18 Si 0.960 3.040 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.275 1.275 22 C 0.114 3.886 23 C -0.150 4.150 24 C -0.137 4.137 25 N -0.241 5.241 26 N -0.305 5.305 27 H 0.132 0.868 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.203 0.797 31 H 0.207 0.793 32 H 0.442 0.558 33 H 0.047 0.953 34 H 0.009 0.991 35 H 0.267 0.733 36 H 0.119 0.881 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.081 0.919 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 -23.750 4.154 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.208 6.208 3 C 0.037 3.963 4 C -0.122 4.122 5 C -0.123 4.123 6 C 0.015 3.985 7 N -0.270 5.270 8 C 0.287 3.713 9 O -0.328 6.328 10 C 0.273 3.727 11 O -0.434 6.434 12 N -0.289 5.289 13 C 0.133 3.867 14 C -0.573 4.573 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.564 5.564 18 Si 0.785 3.215 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.200 1.200 22 C 0.012 3.988 23 C -0.208 4.208 24 C -0.195 4.195 25 N -0.090 5.090 26 N -0.161 5.161 27 H 0.150 0.850 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.220 0.780 31 H 0.224 0.776 32 H 0.283 0.717 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.100 0.900 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.393 -23.107 4.102 24.080 hybrid contribution 1.716 0.407 -0.904 1.982 sum -3.677 -22.699 3.198 23.217 Atomic orbital electron populations 1.23175 0.75662 1.05262 1.02264 1.86232 1.24309 1.22503 1.87802 1.21917 0.92376 0.87077 0.94914 1.21853 0.91247 1.00466 0.98584 1.22288 1.03647 0.88736 0.97585 1.20330 0.92313 0.86458 0.99389 1.42931 1.12434 1.01550 1.70058 1.20394 0.87028 0.85923 0.77935 1.90748 1.13887 1.84960 1.43156 1.20039 0.86702 0.85899 0.80109 1.90708 1.15802 1.86547 1.50359 1.48393 1.08457 1.06459 1.65601 1.19100 0.93408 0.77524 0.96706 1.21575 1.41381 1.01202 0.93119 0.93133 1.25701 0.94606 0.96458 1.01722 1.70020 1.42189 1.09932 1.34244 0.85530 0.78152 0.78015 0.79824 1.19290 1.20484 1.20005 1.21906 0.77662 1.01074 0.98183 1.22062 1.01806 0.97109 0.99798 1.21958 1.00778 1.00692 0.96041 1.73214 1.09543 1.13685 1.12543 1.73007 1.32126 0.94176 1.16792 0.84980 0.92581 0.92759 0.77953 0.77574 0.71662 0.93547 0.97267 0.92389 0.86380 0.93061 0.88887 0.92723 0.94887 0.90007 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.40 113.37 1.18 1.62 16 2 O -0.30 -5.43 10.49 -90.83 -0.95 -6.38 16 3 C 0.23 4.68 7.57 84.91 0.64 5.33 16 4 C -0.09 -1.23 10.15 22.59 0.23 -1.00 16 5 C -0.09 -1.30 10.06 22.63 0.23 -1.07 16 6 C 0.26 6.29 7.51 133.03 1.00 7.29 16 7 N -0.62 -16.40 5.37 -309.33 -1.66 -18.06 16 8 C 0.51 17.71 7.70 87.24 0.67 18.38 16 9 O -0.46 -17.11 10.61 -3.32 -0.04 -17.14 16 10 C 0.49 20.75 7.72 87.24 0.67 21.43 16 11 O -0.55 -26.05 16.12 -3.27 -0.05 -26.10 16 12 N -0.56 -24.65 2.41 -803.83 -1.94 -26.59 16 13 C 0.25 13.24 4.80 85.63 0.41 13.65 16 14 C -0.53 -30.14 9.39 25.60 0.24 -29.90 16 15 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 16 C 0.01 0.82 5.46 84.66 0.46 1.28 16 17 N -0.92 -54.30 13.29 21.45 0.28 -54.01 16 18 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.11 4.22 2.64 44.99 0.12 4.34 16 23 C -0.15 -5.04 7.92 71.98 0.57 -4.47 16 24 C -0.14 -4.98 9.01 71.98 0.65 -4.33 16 25 N -0.24 -7.52 9.07 -54.91 -0.50 -8.02 16 26 N -0.31 -8.55 10.39 -170.20 -1.77 -10.32 16 27 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 29 H 0.05 0.86 8.11 -2.39 -0.02 0.84 16 30 H 0.20 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.21 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.44 9.32 8.24 -92.71 -0.76 8.56 16 33 H 0.05 2.44 5.70 -2.39 -0.01 2.42 16 34 H 0.01 0.55 7.45 -2.38 -0.02 0.53 16 35 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.12 4.24 5.16 -5.27 -0.03 4.22 16 37 H 0.05 1.93 7.23 -2.39 -0.02 1.92 16 38 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 39 H 0.05 1.83 7.84 -2.38 -0.02 1.81 16 40 H 0.03 1.28 7.74 -2.38 -0.02 1.26 16 41 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 Total: -1.00 -76.55 359.21 2.76 -73.78 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.29 Total: 13.72 kcal Atomic # 6 Polarization: 25.46 SS G_CDS: 7.07 Total: 32.53 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -5.58 Total: -116.99 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -1.04 Total: -49.62 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.55 2.76 -73.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551763906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.374 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds