Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34950 * 125.52945 * 2 1 4 4 C 1.41208 * 108.24820 * 179.70682 * 3 2 1 5 5 N 1.32930 * 126.38277 * 180.29794 * 4 3 2 6 6 C 1.33832 * 119.99910 * 0.14214 * 5 4 3 7 7 O 1.21838 * 120.00094 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00199 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00134 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47266 * 175.90576 * 9 8 6 11 11 C 1.50704 * 115.54842 * 294.78306 * 10 9 8 12 12 O 1.20826 * 120.00388 * 114.46272 * 11 10 9 13 13 O 1.34230 * 119.99653 * 294.46490 * 11 10 9 14 14 C 1.52998 * 117.50428 * 149.11252 * 10 9 8 15 15 C 1.53001 * 117.49985 * 80.44867 * 10 9 8 16 16 N 1.37418 * 107.23931 * 0.41757 * 4 3 2 17 17 H 0.97000 * 126.36652 * 179.85656 * 16 4 3 18 18 N 1.36456 * 125.52297 * 179.97438 * 2 1 3 19 19 C 1.46499 * 125.85332 * 0.03446 * 18 2 1 20 20 C 1.50695 * 109.47003 * 85.02711 * 19 18 2 21 21 H 1.08004 * 120.00066 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00121 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99890 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00049 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47381 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47345 * 120.00313 * 24 22 20 27 27 H 1.48501 * 109.47200 * 240.00203 * 24 22 20 28 28 H 1.09000 * 109.47237 * 270.04275 * 1 2 3 29 29 H 1.09004 * 109.46751 * 30.04632 * 1 2 3 30 30 H 1.08997 * 109.47111 * 150.04285 * 1 2 3 31 31 H 1.08004 * 125.87429 * 359.97438 * 3 2 1 32 32 H 0.97002 * 119.99664 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47386 * 295.90287 * 9 8 6 34 34 H 1.08999 * 109.47653 * 55.90335 * 9 8 6 35 35 H 0.96705 * 116.99673 * 180.02562 * 13 11 10 36 36 H 1.09001 * 117.49399 * 359.97438 * 14 10 9 37 37 H 1.08997 * 117.50254 * 145.02061 * 14 10 9 38 38 H 1.09003 * 117.50003 * 214.97813 * 15 10 9 39 39 H 1.08995 * 117.50169 * 359.97438 * 15 10 9 40 40 H 1.09006 * 109.47028 * 205.02658 * 19 18 2 41 41 H 1.08994 * 109.47436 * 325.02406 * 19 18 2 42 42 H 0.97000 * 119.99929 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0982 0.0000 4 6 3.6396 0.6788 0.0069 5 7 4.7104 1.4664 0.0145 6 6 4.5626 2.7966 0.0192 7 8 3.4467 3.2856 0.0169 8 7 5.6483 3.5952 0.0265 9 6 5.4865 5.0512 0.0310 10 6 6.8598 5.7166 0.1420 11 6 7.5982 5.4719 1.4328 12 8 8.6294 4.8423 1.4289 13 8 7.1101 5.9534 2.5868 14 6 7.0402 7.0804 -0.5274 15 6 7.6921 5.8364 -1.1362 16 7 3.6386 -0.6954 0.0014 17 1 4.4193 -1.2711 0.0021 18 7 2.2999 -1.1106 0.0005 19 6 1.8320 -2.4989 0.0004 20 6 1.5556 -2.9357 -1.4151 21 1 1.7123 -2.2478 -2.2329 22 6 1.1026 -4.2135 -1.6663 23 7 0.9113 -5.0509 -0.6705 24 14 0.7593 -4.7547 -3.4209 25 1 1.0503 -3.6338 -4.3506 26 1 1.6219 -5.9153 -3.7587 27 1 -0.6678 -5.1449 -3.5483 28 1 -0.3634 0.0008 1.0277 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3633 -0.8903 -0.5132 31 1 1.9468 2.1219 -0.0004 32 1 6.5367 3.2059 0.0280 33 1 5.0039 5.3661 -0.8943 34 1 4.8704 5.3457 0.8806 35 1 7.6191 5.7712 3.3886 36 1 6.1806 7.5035 -1.0473 37 1 7.6933 7.8006 -0.0345 38 1 8.7738 5.7387 -1.0435 39 1 7.2616 5.4408 -2.0561 40 1 2.5983 -3.1405 0.4356 41 1 0.9178 -2.5743 0.5890 42 1 0.5923 -5.9498 -0.8472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596063704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = 3.044587 kcal Electronic energy + Delta-G solvation = -26295.741528 eV Core-core repulsion = 22279.531525 eV Total energy + Delta-G solvation = -4016.210003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87238 -40.76186 -38.86789 -37.56238 -36.24335 -34.51485 -33.56752 -33.07862 -32.17129 -30.63273 -27.70111 -27.44345 -26.43249 -24.73023 -23.14852 -22.88655 -21.58591 -20.25663 -19.77136 -19.47219 -18.19138 -17.60775 -17.03782 -16.77244 -16.26799 -15.76183 -15.57088 -15.07956 -14.87803 -14.75664 -14.52214 -14.05169 -13.98289 -13.69518 -12.94320 -12.86524 -12.73755 -12.66768 -12.50216 -12.29351 -11.99876 -11.94378 -11.79816 -11.78493 -11.31632 -11.12456 -11.07329 -10.77523 -10.58119 -10.51168 -10.31485 -9.66529 -9.41860 -8.91626 -8.81694 -8.62402 -8.32394 -6.85667 -6.46711 -4.63988 1.80298 1.89802 2.09722 2.64802 3.04791 3.12031 3.14101 3.15547 3.20164 3.70813 4.07207 4.20183 4.38792 4.46915 4.55744 4.69708 4.82577 4.89839 5.08277 5.21731 5.31123 5.51605 5.61218 5.66601 5.68414 5.72720 5.82896 5.89715 6.09618 6.18222 6.23351 6.43077 6.55800 6.62467 6.75382 7.05246 7.39458 7.42672 7.53586 7.65466 7.69859 7.90401 8.31138 8.45058 8.49826 9.06486 9.63957 10.53843 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.002265 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.466290 B =12360.498108 C =12488.160334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.189 3.811 3 C -0.334 4.334 4 C 0.488 3.512 5 N -0.714 5.714 6 C 0.687 3.313 7 O -0.632 6.632 8 N -0.734 5.734 9 C 0.185 3.815 10 C -0.154 4.154 11 C 0.520 3.480 12 O -0.508 6.508 13 O -0.508 6.508 14 C -0.141 4.141 15 C -0.138 4.138 16 N -0.472 5.472 17 H 0.444 0.556 18 N -0.345 5.345 19 C 0.255 3.745 20 C -0.555 4.555 21 H 0.070 0.930 22 C 0.070 3.930 23 N -0.887 5.887 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.278 1.278 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.183 0.817 32 H 0.398 0.602 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.411 0.589 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.945 17.409 2.795 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.063 3.937 3 C -0.366 4.366 4 C 0.235 3.765 5 N -0.479 5.479 6 C 0.386 3.614 7 O -0.514 6.514 8 N -0.389 5.389 9 C 0.060 3.940 10 C -0.156 4.156 11 C 0.362 3.638 12 O -0.396 6.396 13 O -0.319 6.319 14 C -0.178 4.178 15 C -0.175 4.175 16 N -0.194 5.194 17 H 0.291 0.709 18 N -0.132 5.132 19 C 0.138 3.862 20 C -0.593 4.593 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.734 3.266 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.204 1.204 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.200 0.800 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.270 0.730 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.955 16.849 2.500 18.398 hybrid contribution 0.529 -0.900 -0.270 1.078 sum 7.485 15.949 2.230 17.758 Atomic orbital electron populations 1.20638 0.86545 1.04953 1.03541 1.21280 0.94418 0.85570 0.92474 1.22181 0.91100 1.00237 1.23129 1.18670 0.91046 0.82027 0.84708 1.68027 1.28723 1.03830 1.47280 1.16547 0.82766 0.84958 0.77124 1.90730 1.24263 1.78666 1.57771 1.44677 1.08820 1.04413 1.80955 1.20447 0.90579 0.79957 1.03040 1.21180 0.99159 1.05314 0.89908 1.22106 0.82340 0.74774 0.84624 1.90734 1.24220 1.37464 1.87169 1.84531 1.56281 1.72982 1.18136 1.23147 1.03786 0.89431 1.01463 1.23206 0.99952 0.99868 0.94501 1.44391 0.98884 1.04935 1.71183 0.70902 1.47854 0.92564 1.08054 1.64696 1.20000 0.96400 0.70333 0.99433 1.21440 1.47398 0.98689 0.91745 0.91218 1.24954 0.94329 0.95821 0.98411 1.69909 1.44157 1.06907 1.31371 0.86265 0.78272 0.78860 0.83163 1.19378 1.20543 1.20401 0.89929 0.89401 0.89086 0.80044 0.76773 0.90724 0.90501 0.73027 0.86739 0.87769 0.87408 0.86712 0.93204 0.91525 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.92 36.01 0.36 -1.05 16 2 C 0.19 3.44 6.92 -81.70 -0.57 2.87 16 3 C -0.33 -6.60 9.41 -39.62 -0.37 -6.98 16 4 C 0.49 9.97 8.07 -155.29 -1.25 8.72 16 5 N -0.71 -14.76 10.59 -15.79 -0.17 -14.93 16 6 C 0.69 13.86 8.47 -87.76 -0.74 13.12 16 7 O -0.63 -13.90 13.26 5.07 0.07 -13.83 16 8 N -0.73 -11.73 5.47 -65.43 -0.36 -12.09 16 9 C 0.19 2.35 5.50 -4.05 -0.02 2.33 16 10 C -0.15 -1.55 2.03 -155.66 -0.32 -1.87 16 11 C 0.52 5.91 7.46 36.01 0.27 6.18 16 12 O -0.51 -7.06 17.46 -18.75 -0.33 -7.39 16 13 O -0.51 -4.71 13.42 -39.26 -0.53 -5.24 16 14 C -0.14 -0.98 9.93 -26.69 -0.26 -1.24 16 15 C -0.14 -1.14 9.78 -26.69 -0.26 -1.40 16 16 N -0.47 -8.88 7.38 31.33 0.23 -8.65 16 17 H 0.44 7.39 8.96 -182.55 -1.64 5.75 16 18 N -0.34 -6.72 3.63 -58.04 -0.21 -6.93 16 19 C 0.25 5.43 5.71 -5.20 -0.03 5.40 16 20 C -0.55 -13.25 9.39 -34.44 -0.32 -13.57 16 21 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 22 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -22.53 13.29 55.43 0.74 -21.79 16 24 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.39 7.79 -51.93 -0.40 0.99 16 31 H 0.18 3.74 5.77 -52.48 -0.30 3.44 16 32 H 0.40 6.15 8.55 -40.82 -0.35 5.81 16 33 H 0.07 0.91 8.09 -51.92 -0.42 0.49 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.41 2.05 9.10 45.56 0.41 2.47 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 0.90 8.00 -51.93 -0.42 0.48 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.43 7.88 -51.93 -0.41 1.02 16 42 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -32.23 370.66 -9.64 -41.88 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -6.03 Total: 15.03 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: -3.62 Total: 14.11 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 0.23 Total: -64.40 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.79 Total: -26.46 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.23 -9.64 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596063704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.921 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds