Wall clock time and date at job start Fri Apr 10 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47132 * 2 1 4 4 H 1.08998 * 109.51461 * 55.09736 * 3 2 1 5 5 C 1.53301 * 109.55270 * 175.22983 * 3 2 1 6 6 N 1.47149 * 108.38217 * 172.24850 * 5 3 2 7 7 C 1.34777 * 120.97639 * 129.47451 * 6 5 3 8 8 O 1.21374 * 119.99563 * 178.45380 * 7 6 5 9 9 C 1.49303 * 120.00427 * 358.46434 * 7 6 5 10 10 O 1.21406 * 119.99936 * 6.52847 * 9 7 6 11 11 N 1.34781 * 120.00186 * 186.53500 * 9 7 6 12 12 C 1.40293 * 120.00061 * 179.97438 * 11 9 7 13 13 C 1.40721 * 126.09965 * 359.68928 * 12 11 9 14 14 N 1.30875 * 108.37402 * 179.81488 * 13 12 11 15 15 N 1.40065 * 108.43491 * 0.44357 * 14 13 12 16 16 C 1.37295 * 126.05429 * 179.69613 * 15 14 13 17 17 H 1.07993 * 119.99952 * 185.93947 * 16 15 14 18 18 C 1.39016 * 119.99974 * 5.93832 * 16 15 14 19 19 N 1.31276 * 119.99634 * 354.02250 * 18 16 15 20 20 Si 1.86795 * 119.99689 * 174.02124 * 18 16 15 21 21 H 1.48507 * 109.46870 * 94.98179 * 20 18 16 22 22 H 1.48498 * 109.47180 * 214.97570 * 20 18 16 23 23 H 1.48495 * 109.47644 * 334.97997 * 20 18 16 24 24 C 1.35783 * 126.09772 * 179.97438 * 12 11 9 25 25 C 1.47168 * 118.07624 * 309.49640 * 6 5 3 26 26 C 1.53294 * 108.37538 * 50.45719 * 25 6 5 27 27 O 1.42961 * 109.26175 * 307.77007 * 26 25 6 28 28 H 1.08994 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47002 * 300.00587 * 1 2 3 30 30 H 1.09000 * 109.47075 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.46880 * 240.00003 * 2 1 3 32 32 H 1.08997 * 109.46632 * 119.99769 * 2 1 3 33 33 H 1.08997 * 109.67916 * 291.97259 * 5 3 2 34 34 H 1.08995 * 109.67918 * 52.52602 * 5 3 2 35 35 H 0.97000 * 119.99520 * 359.97438 * 11 9 7 36 36 H 1.08001 * 125.80789 * 359.97438 * 13 12 11 37 37 H 0.97003 * 119.99600 * 179.97438 * 19 18 16 38 38 H 1.07998 * 126.25391 * 359.97236 * 24 12 11 39 39 H 1.08994 * 109.64397 * 290.75335 * 25 6 5 40 40 H 1.09009 * 109.72579 * 170.19862 * 25 6 5 41 41 H 1.08995 * 109.50952 * 187.82569 * 26 25 6 42 42 H 1.08998 * 109.51280 * 67.72363 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9817 0.8426 5 6 3.5683 1.4463 0.1201 6 7 4.0452 2.8254 -0.0697 7 6 4.8934 3.3934 0.8104 8 8 5.2975 4.5222 0.6216 9 6 5.3359 2.6341 2.0174 10 8 5.0284 1.4668 2.1466 11 7 6.0766 3.2446 2.9635 12 6 6.4920 2.5313 4.0979 13 6 6.2051 1.1829 4.3804 14 7 6.7641 0.8727 5.5224 15 7 7.4186 2.0075 6.0179 16 6 8.1182 2.0868 7.1966 17 1 8.5051 3.0376 7.5320 18 6 8.3283 0.9430 7.9583 19 7 7.7601 -0.1889 7.6132 20 14 9.4192 1.0171 9.4728 21 1 8.5792 1.2364 10.6777 22 1 10.1601 -0.2623 9.6123 23 1 10.3855 2.1359 9.3328 24 6 7.2380 3.0203 5.1217 25 6 3.5690 3.5669 -1.2483 26 6 2.0408 3.4587 -1.3023 27 8 1.6623 2.0825 -1.2213 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8597 1.0898 1.1080 34 1 3.9983 0.8005 -0.6454 35 1 6.3225 4.1772 2.8601 36 1 5.6249 0.5167 3.7591 37 1 7.9071 -0.9871 8.1446 38 1 7.6189 4.0270 5.2103 39 1 3.9998 3.1352 -2.1516 40 1 3.8602 4.6142 -1.1665 41 1 1.6788 3.8813 -2.2395 42 1 1.6073 4.0055 -0.4649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746366293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:00 Heat of formation + Delta-G solvation = -30.015643 kcal Electronic energy + Delta-G solvation = -27202.359020 eV Core-core repulsion = 23184.715418 eV Total energy + Delta-G solvation = -4017.643602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.30517 -41.44193 -40.12761 -39.29293 -36.62502 -35.66271 -35.05056 -34.86038 -32.30504 -31.26094 -29.99361 -29.09668 -27.17308 -25.75123 -25.20140 -23.37916 -22.82791 -21.99601 -21.37527 -20.99128 -19.47477 -18.73145 -18.14475 -17.62107 -17.44107 -17.24260 -16.92534 -16.50405 -16.15507 -15.96792 -15.68599 -15.58903 -15.19777 -15.00682 -14.85255 -14.60857 -14.31074 -14.10063 -13.58326 -13.51124 -13.23033 -12.94539 -12.87946 -12.75126 -12.61894 -12.20517 -12.07982 -12.04466 -11.97309 -11.87949 -11.62520 -11.22318 -11.08407 -10.86708 -10.14699 -10.11204 -9.76937 -8.64519 -8.49946 -6.26962 0.17483 1.13764 1.28515 1.41746 1.58835 1.70263 1.97645 2.09029 2.33256 2.49270 2.73284 2.80681 3.06348 3.32322 3.62600 3.86521 3.97068 4.07159 4.12816 4.33008 4.38163 4.39379 4.51475 4.58512 4.60630 4.69978 4.75368 4.85510 4.93763 4.96363 4.98417 5.09361 5.14797 5.23153 5.25933 5.43400 5.46603 5.84854 5.91365 6.13642 6.17271 6.34154 6.62557 6.70093 7.01853 7.40364 7.62297 8.49429 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.002720 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.248115 B =10290.592187 C =11340.227930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.084 3.916 4 H 0.054 0.946 5 C 0.025 3.975 6 N -0.581 5.581 7 C 0.522 3.478 8 O -0.541 6.541 9 C 0.489 3.511 10 O -0.525 6.525 11 N -0.576 5.576 12 C -0.059 4.059 13 C -0.043 4.043 14 N -0.308 5.308 15 N -0.163 5.163 16 C -0.354 4.354 17 H 0.141 0.859 18 C -0.003 4.003 19 N -0.819 5.819 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.245 1.245 24 C -0.073 4.073 25 C 0.069 3.931 26 C 0.051 3.949 27 O -0.384 6.384 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.423 0.577 36 H 0.180 0.820 37 H 0.278 0.722 38 H 0.187 0.813 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 5.865 -14.556 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.025 3.975 4 H 0.072 0.928 5 C -0.096 4.096 6 N -0.314 5.314 7 C 0.304 3.696 8 O -0.419 6.419 9 C 0.272 3.728 10 O -0.405 6.405 11 N -0.220 5.220 12 C -0.165 4.165 13 C -0.219 4.219 14 N -0.139 5.139 15 N 0.069 4.931 16 C -0.485 4.485 17 H 0.158 0.842 18 C -0.215 4.215 19 N -0.446 5.446 20 Si 0.836 3.164 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.169 1.169 24 C -0.224 4.224 25 C -0.052 4.052 26 C -0.026 4.026 27 O -0.303 6.303 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.100 0.900 35 H 0.261 0.739 36 H 0.197 0.803 37 H 0.088 0.912 38 H 0.204 0.796 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.156 0.844 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.702 4.426 -13.812 17.449 hybrid contribution 0.543 1.032 0.059 1.167 sum -9.159 5.457 -13.753 17.401 Atomic orbital electron populations 1.21672 0.94368 1.02282 1.01888 1.21513 0.97360 0.92684 1.03627 1.22547 0.92371 0.95649 0.86915 0.92753 1.23939 0.95340 0.81144 1.09181 1.48058 1.43682 1.15962 1.23704 1.19698 0.80256 0.85900 0.83732 1.90727 1.56177 1.18755 1.76216 1.20161 0.80935 0.87237 0.84516 1.90253 1.55631 1.17170 1.77405 1.42097 1.48221 1.14716 1.16987 1.17273 1.13245 0.93368 0.92656 1.24294 1.05236 0.95227 0.97103 1.78162 1.15297 1.08407 1.12073 1.44835 1.29328 1.05588 1.13332 1.20633 1.32725 0.98694 0.96451 0.84210 1.26850 0.97959 0.93808 1.02920 1.70366 1.35763 1.00928 1.37549 0.84597 0.77470 0.79056 0.75232 1.18925 1.20117 1.16852 1.22001 1.10571 0.96675 0.93196 1.22678 0.96385 0.99057 0.87077 1.23098 0.92025 0.82894 1.04551 1.87940 1.79789 1.24264 1.38286 0.91525 0.93113 0.92348 0.90412 0.89826 0.83392 0.89991 0.73916 0.80314 0.91208 0.79621 0.88863 0.87740 0.84440 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.81 71.98 0.71 -1.63 16 2 C -0.11 -2.06 5.65 30.59 0.17 -1.88 16 3 C 0.08 1.74 2.78 30.69 0.09 1.83 16 4 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 5 C 0.02 0.60 5.68 86.36 0.49 1.09 16 6 N -0.58 -14.46 3.02 -819.05 -2.47 -16.93 16 7 C 0.52 15.60 7.77 87.22 0.68 16.27 16 8 O -0.54 -17.16 15.96 -3.32 -0.05 -17.22 16 9 C 0.49 16.92 7.77 87.22 0.68 17.60 16 10 O -0.52 -19.75 10.18 -3.42 -0.03 -19.79 16 11 N -0.58 -20.64 5.45 -305.33 -1.66 -22.30 16 12 C -0.06 -2.64 6.90 37.82 0.26 -2.38 16 13 C -0.04 -2.20 10.85 85.44 0.93 -1.27 16 14 N -0.31 -17.79 10.41 -56.43 -0.59 -18.37 16 15 N -0.16 -8.79 3.73 -189.98 -0.71 -9.50 16 16 C -0.35 -18.26 10.24 84.02 0.86 -17.40 16 17 H 0.14 6.27 7.84 -2.91 -0.02 6.25 16 18 C 0.00 -0.15 5.50 84.96 0.47 0.32 16 19 N -0.82 -45.73 11.84 21.67 0.26 -45.47 16 20 Si 1.02 37.54 29.56 68.60 2.03 39.57 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 22 H -0.28 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 24 C -0.07 -3.33 11.50 83.41 0.96 -2.37 16 25 C 0.07 1.27 6.63 86.35 0.57 1.85 16 26 C 0.05 0.80 6.98 72.08 0.50 1.30 16 27 O -0.38 -7.57 9.92 -148.98 -1.48 -9.05 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.15 4.29 3.96 -72.85 -0.29 4.00 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.42 12.82 8.31 -92.71 -0.77 12.05 16 36 H 0.18 8.81 5.92 -2.91 -0.02 8.79 16 37 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.92 7.09 -2.38 -0.02 1.91 16 41 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -68.78 350.02 2.66 -66.12 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: 0.02 Total: 39.62 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 7.36 Total: 13.33 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -5.18 Total: -112.58 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.57 Total: -46.06 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -68.78 2.66 -66.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746366293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.101 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds