Wall clock time and date at job start Fri Apr 10 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77201 * 2 1 4 4 C 1.41384 * 103.98528 * 179.74051 * 3 2 1 5 5 C 1.50698 * 126.80687 * 180.20620 * 4 3 2 6 6 H 1.09000 * 109.86946 * 4.29604 * 5 4 3 7 7 C 1.54319 * 109.88429 * 125.31354 * 5 4 3 8 8 C 1.55403 * 102.82603 * 141.51737 * 7 5 4 9 9 C 1.54907 * 101.66930 * 324.66488 * 8 7 5 10 10 N 1.47022 * 109.88208 * 243.28429 * 5 4 3 11 11 C 1.34777 * 125.64719 * 61.67297 * 10 5 4 12 12 O 1.21583 * 120.00287 * 0.02562 * 11 10 5 13 13 N 1.34778 * 119.99975 * 180.02562 * 11 10 5 14 14 C 1.46499 * 119.99981 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47018 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00440 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99796 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00477 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99945 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47276 * 89.99960 * 22 20 18 24 24 H 1.48507 * 109.46812 * 209.99840 * 22 20 18 25 25 H 1.48498 * 109.47236 * 329.99794 * 22 20 18 26 26 N 1.30176 * 106.39294 * 0.22557 * 4 3 2 27 27 O 1.20926 * 111.60451 * 359.97438 * 26 4 3 28 28 H 1.09001 * 109.47036 * 90.00406 * 1 2 3 29 29 H 1.09002 * 109.46832 * 209.99998 * 1 2 3 30 30 H 1.08992 * 109.47367 * 330.00141 * 1 2 3 31 31 H 1.08002 * 128.01287 * 0.02562 * 3 2 1 32 32 H 1.08996 * 110.72266 * 259.97395 * 7 5 4 33 33 H 1.08998 * 110.72205 * 23.25027 * 7 5 4 34 34 H 1.09003 * 111.04080 * 206.53014 * 8 7 5 35 35 H 1.09000 * 110.92055 * 82.75011 * 8 7 5 36 36 H 1.09003 * 110.36847 * 278.08898 * 9 8 7 37 37 H 1.09003 * 110.37150 * 155.76348 * 9 8 7 38 38 H 0.97002 * 120.00114 * 0.02562 * 13 11 10 39 39 H 1.08996 * 109.47553 * 299.99848 * 14 13 11 40 40 H 1.08995 * 109.47272 * 60.00342 * 14 13 11 41 41 H 0.96997 * 120.00091 * 0.02562 * 17 15 14 42 42 H 0.96996 * 119.99775 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0062 5 6 4.9211 1.3001 0.0132 6 1 4.7228 2.3692 0.0896 7 6 5.7924 0.8416 1.2015 8 6 7.2249 0.8417 0.5991 9 6 6.9533 0.3832 -0.8554 10 7 5.6731 1.0179 -1.2182 11 6 5.2607 1.2943 -2.4712 12 8 4.1810 1.8230 -2.6532 13 7 6.0451 0.9846 -3.5225 14 6 5.5971 1.2855 -4.8845 15 6 6.6494 0.8438 -5.8686 16 8 7.6728 0.3279 -5.4715 17 7 6.4530 1.0211 -7.1902 18 6 7.4102 0.6187 -8.0854 19 1 8.3214 0.1593 -7.7318 20 6 7.2079 0.8020 -9.4479 21 7 6.0990 1.3605 -9.8783 22 14 8.5118 0.2531 -10.6678 23 1 8.2524 -1.1524 -11.0708 24 1 8.4674 1.1281 -11.8669 25 1 9.8522 0.3474 -10.0356 26 7 3.4764 -0.7563 0.0043 27 8 2.3095 -1.0736 -0.0015 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 2.0344 2.1271 0.0004 32 1 5.7191 1.5477 2.0285 33 1 5.5097 -0.1609 1.5227 34 1 7.8681 0.1315 1.1189 35 1 7.6555 1.8429 0.6193 36 1 6.8648 -0.7022 -0.9008 37 1 7.7484 0.7278 -1.5166 38 1 6.9063 0.5624 -3.3774 39 1 4.6658 0.7563 -5.0860 40 1 5.4342 2.3586 -4.9846 41 1 5.6345 1.4333 -7.5078 42 1 5.9577 1.4880 -10.8294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807552105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:25 Heat of formation + Delta-G solvation = 0.480321 kcal Electronic energy + Delta-G solvation = -26972.228841 eV Core-core repulsion = 22955.907643 eV Total energy + Delta-G solvation = -4016.321198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.92813 -40.27728 -38.48577 -37.47816 -34.53887 -34.19190 -33.64103 -33.21968 -31.68394 -31.30945 -29.17084 -27.90562 -27.41907 -24.69619 -23.84227 -23.00530 -21.91302 -20.74927 -19.63323 -19.12232 -18.17854 -17.74332 -17.61084 -17.43713 -16.47710 -15.79548 -15.45284 -15.03951 -14.85295 -14.45613 -14.15363 -13.99141 -13.93229 -13.68325 -13.56522 -13.45612 -13.30608 -13.03622 -12.62455 -12.60162 -12.15105 -11.89953 -11.86422 -11.62194 -11.50370 -11.20449 -11.11770 -10.96438 -10.45313 -10.31904 -10.27806 -9.87865 -9.62671 -9.33969 -8.95107 -8.61572 -8.50621 -8.08907 -6.50387 -3.92326 1.43903 2.07447 2.79482 3.05935 3.12376 3.22598 3.28081 3.36280 3.76001 3.96607 4.07257 4.18715 4.27152 4.41035 4.52469 4.72784 4.90187 4.95026 5.00985 5.09956 5.17272 5.18288 5.21574 5.38229 5.46055 5.48437 5.53488 5.61830 5.66134 5.77103 5.87798 5.95761 5.98887 6.01486 6.08203 6.19882 6.76942 7.14386 7.47011 7.93426 8.17241 8.25943 8.46386 8.78688 9.05670 9.40536 9.88536 10.66597 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.002702 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.426092 B =10359.330268 C =11421.290576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.042 4.042 3 C -0.208 4.208 4 C 0.017 3.983 5 C 0.238 3.762 6 H 0.095 0.905 7 C -0.124 4.124 8 C -0.128 4.128 9 C 0.097 3.903 10 N -0.630 5.630 11 C 0.724 3.276 12 O -0.589 6.589 13 N -0.721 5.721 14 C 0.129 3.871 15 C 0.430 3.570 16 O -0.597 6.597 17 N -0.549 5.549 18 C -0.304 4.304 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 N -0.354 5.354 27 O 0.097 5.903 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.407 0.593 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 0.605 22.949 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.230 4.230 4 C -0.143 4.143 5 C 0.132 3.868 6 H 0.113 0.887 7 C -0.162 4.162 8 C -0.166 4.166 9 C -0.026 4.026 10 N -0.369 5.369 11 C 0.425 3.575 12 O -0.467 6.467 13 N -0.379 5.379 14 C 0.001 3.999 15 C 0.215 3.785 16 O -0.484 6.484 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 N -0.057 5.057 27 O 0.029 5.971 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.186 0.814 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.245 0.755 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.640 -0.310 22.714 23.667 hybrid contribution 0.088 0.584 -1.033 1.190 sum -6.553 0.274 21.681 22.652 Atomic orbital electron populations 1.20296 0.84185 1.04258 1.04140 1.24423 0.96305 0.86207 1.03569 1.22323 0.91177 1.00884 1.08648 1.23705 0.97300 0.90229 1.03036 1.19596 0.85330 0.97562 0.84315 0.88695 1.22766 0.94420 1.03013 0.96015 1.22800 0.96415 1.02739 0.94683 1.22342 0.85760 0.98079 0.96438 1.47534 1.20072 1.65586 1.03729 1.15340 0.83645 0.79291 0.79187 1.90900 1.22005 1.49738 1.84057 1.44783 1.22901 1.65840 1.04347 1.20785 0.97253 1.01441 0.80446 1.19742 0.88837 0.86196 0.83714 1.90487 1.29791 1.49742 1.78390 1.41781 1.19908 1.52740 1.03966 1.19727 1.00016 1.37353 0.86287 0.87697 1.25327 0.97652 0.96823 0.97932 1.69618 1.25063 1.42630 1.16199 0.85813 0.80500 0.78437 0.79273 1.20269 1.20790 1.19324 1.73760 0.96794 1.16297 1.18899 1.84799 1.11369 1.33271 1.67617 0.89461 0.90066 0.89188 0.81416 0.89386 0.89934 0.89439 0.90150 0.91204 0.90098 0.75533 0.90150 0.89989 0.77024 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.01 0.38 -0.08 16 2 C -0.04 -0.46 7.49 -35.30 -0.26 -0.72 16 3 C -0.21 -2.51 11.06 -39.38 -0.44 -2.94 16 4 C 0.02 0.24 5.37 -82.10 -0.44 -0.21 16 5 C 0.24 2.87 3.36 -68.11 -0.23 2.64 16 6 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 7 C -0.12 -1.07 6.49 -24.76 -0.16 -1.23 16 8 C -0.13 -1.02 7.09 -24.45 -0.17 -1.19 16 9 C 0.10 1.09 6.58 -2.53 -0.02 1.07 16 10 N -0.63 -9.01 3.06 -170.01 -0.52 -9.53 16 11 C 0.72 13.04 8.28 -86.92 -0.72 12.32 16 12 O -0.59 -12.11 16.18 5.29 0.09 -12.02 16 13 N -0.72 -13.31 5.49 -66.42 -0.36 -13.67 16 14 C 0.13 2.54 6.15 -5.19 -0.03 2.51 16 15 C 0.43 10.17 7.85 -10.98 -0.09 10.09 16 16 O -0.60 -15.67 15.24 5.55 0.08 -15.59 16 17 N -0.55 -13.91 5.29 -10.96 -0.06 -13.97 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 21 N -0.89 -24.16 13.05 55.50 0.72 -23.44 16 22 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 N -0.35 -5.24 11.78 33.42 0.39 -4.85 16 27 O 0.10 1.31 11.20 17.19 0.19 1.51 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.78 7.62 -51.93 -0.40 0.39 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.90 7.30 -51.93 -0.38 0.52 16 38 H 0.41 7.38 5.92 -40.82 -0.24 7.14 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.40 9.66 7.90 -40.82 -0.32 9.34 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -34.40 361.17 -6.96 -41.37 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.50 Total: 14.71 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -2.42 Total: 14.31 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: 0.18 Total: -65.46 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: 0.36 Total: -26.10 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.40 -6.96 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.847 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds