Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77201 * 2 1 4 4 C 1.41384 * 103.98528 * 179.74051 * 3 2 1 5 5 C 1.50698 * 126.80687 * 180.20620 * 4 3 2 6 6 H 1.09000 * 109.86946 * 4.29604 * 5 4 3 7 7 C 1.54319 * 109.88429 * 125.31354 * 5 4 3 8 8 C 1.55403 * 102.82603 * 141.51737 * 7 5 4 9 9 C 1.54907 * 101.66930 * 324.66488 * 8 7 5 10 10 N 1.47022 * 109.88208 * 243.28429 * 5 4 3 11 11 C 1.34777 * 125.64719 * 61.67297 * 10 5 4 12 12 O 1.21583 * 120.00287 * 0.02562 * 11 10 5 13 13 N 1.34778 * 119.99975 * 180.02562 * 11 10 5 14 14 C 1.46499 * 119.99981 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47018 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00440 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99796 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00477 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99945 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47276 * 89.99960 * 22 20 18 24 24 H 1.48507 * 109.46812 * 209.99840 * 22 20 18 25 25 H 1.48498 * 109.47236 * 329.99794 * 22 20 18 26 26 N 1.30176 * 106.39294 * 0.22557 * 4 3 2 27 27 O 1.20926 * 111.60451 * 359.97438 * 26 4 3 28 28 H 1.09001 * 109.47036 * 90.00406 * 1 2 3 29 29 H 1.09002 * 109.46832 * 209.99998 * 1 2 3 30 30 H 1.08992 * 109.47367 * 330.00141 * 1 2 3 31 31 H 1.08002 * 128.01287 * 0.02562 * 3 2 1 32 32 H 1.08996 * 110.72266 * 259.97395 * 7 5 4 33 33 H 1.08998 * 110.72205 * 23.25027 * 7 5 4 34 34 H 1.09003 * 111.04080 * 206.53014 * 8 7 5 35 35 H 1.09000 * 110.92055 * 82.75011 * 8 7 5 36 36 H 1.09003 * 110.36847 * 278.08898 * 9 8 7 37 37 H 1.09003 * 110.37150 * 155.76348 * 9 8 7 38 38 H 0.97002 * 120.00114 * 0.02562 * 13 11 10 39 39 H 1.08996 * 109.47553 * 299.99848 * 14 13 11 40 40 H 1.08995 * 109.47272 * 60.00342 * 14 13 11 41 41 H 0.96997 * 120.00091 * 0.02562 * 17 15 14 42 42 H 0.96996 * 119.99775 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0062 5 6 4.9211 1.3001 0.0132 6 1 4.7228 2.3692 0.0896 7 6 5.7924 0.8416 1.2015 8 6 7.2249 0.8417 0.5991 9 6 6.9533 0.3832 -0.8554 10 7 5.6731 1.0179 -1.2182 11 6 5.2607 1.2943 -2.4712 12 8 4.1810 1.8230 -2.6532 13 7 6.0451 0.9846 -3.5225 14 6 5.5971 1.2855 -4.8845 15 6 6.6494 0.8438 -5.8686 16 8 7.6728 0.3279 -5.4715 17 7 6.4530 1.0211 -7.1902 18 6 7.4102 0.6187 -8.0854 19 1 8.3214 0.1593 -7.7318 20 6 7.2079 0.8020 -9.4479 21 7 6.0990 1.3605 -9.8783 22 14 8.5118 0.2531 -10.6678 23 1 8.2524 -1.1524 -11.0708 24 1 8.4674 1.1281 -11.8669 25 1 9.8522 0.3474 -10.0356 26 7 3.4764 -0.7563 0.0043 27 8 2.3095 -1.0736 -0.0015 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 2.0344 2.1271 0.0004 32 1 5.7191 1.5477 2.0285 33 1 5.5097 -0.1609 1.5227 34 1 7.8681 0.1315 1.1189 35 1 7.6555 1.8429 0.6193 36 1 6.8648 -0.7022 -0.9008 37 1 7.7484 0.7278 -1.5166 38 1 6.9063 0.5624 -3.3774 39 1 4.6658 0.7563 -5.0860 40 1 5.4342 2.3586 -4.9846 41 1 5.6345 1.4333 -7.5078 42 1 5.9577 1.4880 -10.8294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807552105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = -24.102220 kcal Electronic energy + Delta-G solvation = -26973.294820 eV Core-core repulsion = 22955.907643 eV Total energy + Delta-G solvation = -4017.387177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.89196 -41.54288 -40.24796 -38.76131 -36.29208 -35.52643 -34.97917 -34.11631 -33.41939 -32.64532 -30.11826 -29.03632 -28.61143 -26.50630 -24.96691 -24.00068 -22.73348 -21.88889 -21.35846 -20.51532 -20.01028 -19.04683 -18.59649 -18.36545 -17.64912 -17.38927 -17.00194 -16.62341 -16.43417 -16.00861 -15.49545 -15.38123 -15.21375 -14.64347 -14.48524 -14.32162 -14.17492 -14.00185 -13.96564 -13.68625 -13.56092 -13.32981 -13.23878 -12.92351 -12.72354 -12.48113 -12.25702 -12.13529 -12.00092 -11.74372 -11.59770 -11.49542 -11.04797 -10.60466 -10.39079 -10.21874 -10.12650 -9.72402 -8.53177 -6.03727 0.52134 1.06825 1.34620 1.41314 1.53587 1.61884 1.85093 1.99074 2.25996 2.26501 2.83161 3.08991 3.13482 3.14901 3.40429 3.63976 3.70116 4.02802 4.15294 4.17488 4.18064 4.34377 4.37961 4.38873 4.40397 4.56918 4.69208 4.70809 4.80963 4.83225 4.93678 4.99929 5.02755 5.16229 5.23286 5.25209 5.28136 5.36253 5.88114 5.89222 6.44780 6.80865 7.00579 7.31066 7.35642 7.43256 7.90528 8.63837 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.002702 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.426092 B =10359.330268 C =11421.290576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.035 4.035 3 C -0.229 4.229 4 C 0.006 3.994 5 C 0.226 3.774 6 H 0.102 0.898 7 C -0.113 4.113 8 C -0.114 4.114 9 C 0.087 3.913 10 N -0.628 5.628 11 C 0.719 3.281 12 O -0.619 6.619 13 N -0.724 5.724 14 C 0.143 3.857 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.557 5.557 18 C -0.338 4.338 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.269 1.269 26 N -0.385 5.385 27 O 0.080 5.920 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.184 0.816 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.408 0.592 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.399 0.601 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 1.022 23.980 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 C -0.251 4.251 4 C -0.154 4.154 5 C 0.122 3.878 6 H 0.120 0.880 7 C -0.151 4.151 8 C -0.152 4.152 9 C -0.035 4.035 10 N -0.366 5.366 11 C 0.421 3.579 12 O -0.499 6.499 13 N -0.381 5.381 14 C 0.015 3.985 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.192 5.192 18 C -0.467 4.467 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.821 3.179 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.194 1.194 26 N -0.091 5.091 27 O 0.015 5.985 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.201 0.799 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.246 0.754 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.233 0.767 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.735 0.098 23.791 24.726 hybrid contribution 0.043 0.452 -1.293 1.371 sum -6.692 0.550 22.498 23.478 Atomic orbital electron populations 1.20541 0.80938 1.06294 1.04975 1.25234 0.98000 0.85242 1.01362 1.22656 0.90889 1.01997 1.09579 1.24081 0.98516 0.90226 1.02574 1.19990 0.85436 0.97935 0.84461 0.88034 1.22771 0.93803 1.03192 0.95354 1.22811 0.96384 1.04056 0.91962 1.22579 0.84404 0.97604 0.98920 1.47628 1.21254 1.64566 1.03109 1.15472 0.83185 0.79193 0.80082 1.90865 1.23128 1.51160 1.84795 1.44735 1.23099 1.66245 1.04067 1.20576 0.95721 1.02015 0.80202 1.20329 0.89050 0.84836 0.83748 1.90462 1.31217 1.50642 1.78870 1.41820 1.19803 1.53199 1.04422 1.19744 1.00328 1.39170 0.87475 0.89570 1.26155 0.99659 0.96265 0.99012 1.69684 1.26222 1.42660 1.16977 0.84855 0.77694 0.78333 0.77019 1.19575 1.19485 1.19387 1.73743 0.97605 1.17110 1.20668 1.84747 1.11438 1.34330 1.67994 0.88985 0.88401 0.86798 0.79872 0.86380 0.90873 0.87131 0.88736 0.91923 0.90170 0.75426 0.89651 0.88766 0.76694 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.45 71.24 0.74 -0.03 16 2 C -0.04 -0.75 7.49 25.04 0.19 -0.56 16 3 C -0.23 -5.38 11.06 22.40 0.25 -5.13 16 4 C 0.01 0.15 5.37 43.58 0.23 0.39 16 5 C 0.23 5.26 3.36 44.59 0.15 5.41 16 6 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 7 C -0.11 -1.71 6.49 31.87 0.21 -1.51 16 8 C -0.11 -1.53 7.09 32.07 0.23 -1.31 16 9 C 0.09 1.90 6.58 86.86 0.57 2.47 16 10 N -0.63 -17.71 3.06 -810.06 -2.47 -20.18 16 11 C 0.72 25.99 8.28 179.05 1.48 27.47 16 12 O -0.62 -25.54 16.18 -3.98 -0.06 -25.61 16 13 N -0.72 -26.90 5.49 -482.31 -2.65 -29.54 16 14 C 0.14 5.68 6.15 85.63 0.53 6.21 16 15 C 0.43 20.86 7.85 87.66 0.69 21.54 16 16 O -0.62 -33.32 15.24 -3.06 -0.05 -33.37 16 17 N -0.56 -28.73 5.29 -306.98 -1.62 -30.36 16 18 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 19 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 20 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 21 N -0.92 -49.16 13.05 21.67 0.28 -48.88 16 22 Si 1.00 42.15 29.55 68.60 2.03 44.17 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 N -0.38 -11.53 11.78 -49.54 -0.58 -12.11 16 27 O 0.08 2.17 11.20 71.69 0.80 2.97 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.29 7.62 -2.39 -0.02 1.27 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.75 7.30 -2.39 -0.02 1.73 16 38 H 0.41 14.98 5.92 -92.71 -0.55 14.43 16 39 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 41 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 42 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -75.02 361.17 2.02 -73.00 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -0.20 Total: 43.12 kcal Atomic # 6 Polarization: 30.23 SS G_CDS: 6.55 Total: 36.78 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -7.05 Total: -141.07 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: 0.69 Total: -56.00 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -75.02 2.02 -73.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.900 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds