Wall clock time and date at job start Fri Apr 10 2020 18:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35239 * 126.68992 * 2 1 4 4 C 1.42048 * 103.95659 * 179.97438 * 3 2 1 5 5 N 1.39355 * 126.90340 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99825 * 359.97438 * 5 4 3 7 7 O 1.21356 * 119.99621 * 0.02562 * 6 5 4 8 8 C 1.49380 * 120.00113 * 180.02562 * 6 5 4 9 9 O 1.21352 * 119.99872 * 359.97438 * 8 6 5 10 10 N 1.34774 * 119.99899 * 180.02562 * 8 6 5 11 11 C 1.47423 * 125.64884 * 180.02562 * 10 8 6 12 12 C 1.54912 * 104.83178 * 204.08923 * 11 10 8 13 13 H 1.08996 * 111.00652 * 81.06144 * 12 11 10 14 14 C 1.53002 * 111.00282 * 204.91565 * 12 11 10 15 15 C 1.55156 * 101.57949 * 322.98729 * 12 11 10 16 16 H 1.09000 * 110.72067 * 277.13756 * 15 12 11 17 17 N 1.46502 * 110.71824 * 154.04715 * 15 12 11 18 18 C 1.36933 * 119.99833 * 154.99778 * 17 15 12 19 19 H 1.08002 * 120.00500 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99973 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00242 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47216 * 120.00430 * 22 20 18 25 25 H 1.48505 * 109.47311 * 240.00458 * 22 20 18 26 26 C 1.47020 * 125.65067 * 359.68477 * 10 8 6 27 27 N 1.30756 * 106.20054 * 359.97438 * 4 3 2 28 28 O 1.20912 * 111.46753 * 359.72132 * 27 4 3 29 29 H 1.09002 * 109.47152 * 90.00180 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00281 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00262 * 1 2 3 32 32 H 1.08005 * 128.02000 * 359.95174 * 3 2 1 33 33 H 0.97003 * 120.00613 * 180.02562 * 5 4 3 34 34 H 1.08996 * 110.36403 * 322.92293 * 11 10 8 35 35 H 1.09002 * 110.36888 * 85.24771 * 11 10 8 36 36 H 1.09005 * 109.47465 * 58.54216 * 14 12 11 37 37 H 1.08995 * 109.47603 * 178.54333 * 14 12 11 38 38 H 1.09003 * 109.47117 * 298.54591 * 14 12 11 39 39 H 0.96993 * 120.00204 * 334.99908 * 17 15 12 40 40 H 0.97007 * 120.00352 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.88243 * 298.39925 * 26 10 8 42 42 H 1.09005 * 109.88459 * 59.56137 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6252 0.5355 0.0006 5 7 4.8276 1.2399 0.0014 6 6 4.8190 2.5877 0.0010 7 8 3.7642 3.1877 0.0006 8 6 6.1079 3.3429 0.0012 9 8 7.1627 2.7428 0.0022 10 7 6.0992 4.6906 0.0014 11 6 7.2917 5.5574 0.0011 12 6 6.8088 6.8963 0.6127 13 1 6.7832 6.8420 1.7010 14 6 7.6841 8.0605 0.1442 15 6 5.3761 7.0072 0.0276 16 1 5.4020 7.4227 -0.9798 17 7 4.5218 7.8180 0.8988 18 6 3.4331 8.4662 0.3793 19 1 3.2045 8.3800 -0.6727 20 6 2.6234 9.2341 1.2048 21 7 2.9022 9.3396 2.4868 22 14 1.1379 10.1177 0.4964 23 1 1.0441 9.8394 -0.9594 24 1 -0.0935 9.6359 1.1723 25 1 1.2817 11.5798 0.7130 26 6 4.8991 5.5398 -0.0051 27 7 3.4764 -0.7635 0.0015 28 8 2.3082 -1.0752 0.0069 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 2.0302 2.1263 -0.0007 33 1 5.6708 0.7603 0.0014 34 1 8.0781 5.1210 0.6168 35 1 7.6480 5.7122 -1.0173 36 1 7.6583 8.1196 -0.9439 37 1 7.3075 8.9916 0.5677 38 1 8.7102 7.8997 0.4750 39 1 4.7273 7.8958 1.8435 40 1 2.3366 9.8765 3.0637 41 1 4.3200 5.3561 -0.9101 42 1 4.2916 5.3299 0.8752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939730293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:34 Heat of formation + Delta-G solvation = 21.937040 kcal Electronic energy + Delta-G solvation = -27121.440312 eV Core-core repulsion = 23106.049547 eV Total energy + Delta-G solvation = -4015.390765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.05983 -40.98416 -39.17699 -37.75202 -35.95843 -34.17563 -33.80646 -32.58121 -32.15576 -30.77294 -28.03855 -27.74622 -27.20168 -25.10149 -24.00724 -23.25733 -21.65956 -21.02666 -20.11543 -19.91816 -17.88422 -17.69942 -17.63255 -17.20910 -16.92739 -16.35108 -16.25343 -15.47471 -15.05250 -14.44052 -14.14435 -13.87689 -13.73874 -13.63243 -13.50886 -13.30695 -13.21227 -12.81785 -12.67323 -12.59051 -12.28383 -11.97156 -11.65183 -11.60774 -11.43854 -11.20150 -11.00937 -10.77673 -10.67830 -10.28010 -10.03144 -9.83723 -9.72139 -9.59870 -9.10208 -9.02257 -8.61994 -7.13069 -5.87935 -3.18839 0.95249 1.40299 1.84383 2.19294 2.91044 3.13311 3.21358 3.37573 3.43990 3.45751 4.01840 4.21974 4.50349 4.67439 4.80532 4.84231 5.02830 5.04070 5.10941 5.14533 5.33462 5.47758 5.54362 5.57310 5.63436 5.72315 5.76336 5.82444 5.89947 6.11366 6.13987 6.19320 6.22491 6.35952 6.49078 6.53630 6.64965 6.80717 7.29706 7.44284 7.62014 7.82835 8.09491 8.28970 9.41465 9.93837 10.28737 11.33963 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.003688 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.052421 B = 7589.439003 C = 9975.748551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.225 4.225 4 C 0.248 3.752 5 N -0.611 5.611 6 C 0.517 3.483 7 O -0.473 6.473 8 C 0.524 3.476 9 O -0.533 6.533 10 N -0.574 5.574 11 C 0.112 3.888 12 C -0.116 4.116 13 H 0.086 0.914 14 C -0.132 4.132 15 C 0.175 3.825 16 H 0.070 0.930 17 N -0.708 5.708 18 C -0.248 4.248 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.073 3.927 27 N -0.388 5.388 28 O 0.098 5.902 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.193 0.807 33 H 0.429 0.571 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.070 0.930 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -15.131 -5.512 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.248 4.248 4 C -0.001 4.001 5 N -0.264 5.264 6 C 0.298 3.702 7 O -0.342 6.342 8 C 0.305 3.695 9 O -0.411 6.411 10 N -0.306 5.306 11 C -0.010 4.010 12 C -0.136 4.136 13 H 0.104 0.896 14 C -0.190 4.190 15 C 0.062 3.938 16 H 0.088 0.912 17 N -0.348 5.348 18 C -0.379 4.379 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.052 4.052 27 N -0.103 5.103 28 O 0.036 5.964 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.210 0.790 33 H 0.268 0.732 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.641 -15.920 -5.600 17.082 hybrid contribution -0.707 0.911 0.034 1.153 sum 1.934 -15.009 -5.565 16.124 Atomic orbital electron populations 1.20372 0.83537 1.04899 1.04299 1.24457 0.96553 0.85659 1.01959 1.22803 0.89090 1.02460 1.10455 1.20448 0.88129 0.88950 1.02551 1.42080 1.06984 1.05904 1.71481 1.20361 0.90886 0.81555 0.77400 1.90790 1.32103 1.67574 1.43730 1.19109 0.88142 0.82372 0.79853 1.90762 1.31799 1.67850 1.50701 1.48376 1.11274 1.03547 1.67441 1.22489 0.87313 0.89682 1.01517 1.22698 0.96968 0.92840 1.01065 0.89586 1.21596 0.98162 0.98184 1.01043 1.21326 0.88339 0.88539 0.95580 0.91173 1.42341 1.29508 1.54842 1.08062 1.19292 1.02189 1.22574 0.93823 0.90857 1.24756 0.99439 1.00626 0.95535 1.69668 1.40238 1.44169 1.03533 0.86125 0.82685 0.79250 0.78134 1.20428 1.21767 1.21790 1.23677 0.85777 0.92470 1.03272 1.74060 0.97676 1.12943 1.25662 1.84788 1.10362 1.32420 1.68786 0.89217 0.88619 0.89745 0.78954 0.73231 0.90239 0.90656 0.92688 0.91196 0.93109 0.77845 0.93380 0.91124 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.45 36.01 0.38 -0.07 16 2 C -0.02 -0.24 7.48 -35.37 -0.26 -0.50 16 3 C -0.23 -2.90 9.79 -39.19 -0.38 -3.28 16 4 C 0.25 3.43 8.17 -154.93 -1.27 2.17 16 5 N -0.61 -8.16 5.41 -11.86 -0.06 -8.22 16 6 C 0.52 7.73 7.82 -11.62 -0.09 7.64 16 7 O -0.47 -7.85 11.40 5.49 0.06 -7.78 16 8 C 0.52 8.10 7.91 -11.62 -0.09 8.01 16 9 O -0.53 -8.69 16.73 5.50 0.09 -8.60 16 10 N -0.57 -8.86 3.33 -171.05 -0.57 -9.43 16 11 C 0.11 1.51 6.37 -2.53 -0.02 1.50 16 12 C -0.12 -1.70 3.27 -88.47 -0.29 -1.99 16 13 H 0.09 1.35 8.01 -51.93 -0.42 0.93 16 14 C -0.13 -1.72 9.29 37.16 0.35 -1.37 16 15 C 0.17 3.14 3.07 -66.09 -0.20 2.94 16 16 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16 17 N -0.71 -16.28 5.17 -51.65 -0.27 -16.55 16 18 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 21 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16 22 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.07 1.27 5.26 -3.06 -0.02 1.25 16 27 N -0.39 -5.28 12.10 31.18 0.38 -4.91 16 28 O 0.10 1.17 11.19 17.07 0.19 1.36 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.19 2.62 6.22 -52.48 -0.33 2.29 16 33 H 0.43 5.05 8.29 -40.82 -0.34 4.71 16 34 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 36 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.39 9.56 7.76 -40.82 -0.32 9.25 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.07 1.24 7.71 -51.93 -0.40 0.84 16 42 H 0.08 1.68 7.46 -51.93 -0.39 1.30 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -30.68 358.02 -6.74 -37.42 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.51 Total: 11.50 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -2.15 Total: 9.42 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: 0.20 Total: -65.14 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.35 Total: -15.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.68 -6.74 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939730293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.354 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds